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Reproducible research workflows in the EOSC Federation

Author: Sesink, Laurents; den Heijer, Cornelis
Publisher: Zenodo
DOI: 10.5281/zenodo.17296180
Source: https://zenodo.org/records/17296180/files/20251006-LCRDM-DCC-PO-reproducible-research-workflows-in-the-EOSC-federation.pdf
Lau en s Sesink - P og amma manage Inno a ion Zone Open Science –SURF
Kees den Heije –Na ional Liaison DCC Implemen a ion Ne wo k
6 Oc obe 2025, DCC-PO and LCRDM Ne wo king Day
Ti le slide
Rep oducible esea ch wo k lows in he
EOSC Fede a ion
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Agenda
▪Wha is he EOSC Fede a ion
▪Hands-on wi h ep oducible wo k low
▪Discussion and e alua ion
2
h ps://edu.nl/ebj 7
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Wha is he EOSC Fede a ion
A Web o FAIR digi al objec s (e.g. da a, publica ions and so wa e) and Se ices’ o science in Eu ope.
A mul i-disciplina y en i onmen whe e esea che s can publish, ind and e-use da a, ools and se ices,
enabling hem o be e conduc hei wo k.
Go e ned and de eloped by he EC, Eu opean membe s a es and associa ed coun ies and he
communi y ( esea ch pe o ming ins i u es, se ice p o ide s, unde s).
3
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O ganisa ions in ol ed in he Ne he lands
e-in as uc u es
Bes p ac ices & suppo Domain speci ic Resea ch In as uc u es
Resea ch pe o ming, suppo ing and
unding o ganisa ions
Make Open Science he no m
⚫Technical and Seman ic
In e ope abili y TF
⚫Long e m Da a Re en ion TF
⚫EOSC Fede a ion Handbook w i e s’
eam
⚫FAIRCORE4EOSC, FAIR-IMPACT,
EOSC-ENTRUST, AARC-TREE
EOSC Rela ed ac i i ies
EOSC NL WG EOSC-A Membe s/obse e s
4
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EOSC is a ede a ion (sys em o sys ems)
5
An open, us ed, ede a ion o in as uc u es
I p o ides access o exis ing Resea ch In as uc u es in Eu ope
I will enable ci ca 2 million Eu opean esea che s o s o e, sha e, p ocess, analyze,
and euse esea ch digi al objec s

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EOSC EU Node
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EOSC EU node
Access o da a, s o age, compu e and analysis ools
S ep 1. Sea ch o da a
in he EOSC EU node
S ep 5. Upload you da a in he EOSC
EU node
S ep 6. C ea e a Jupy e No ebook in
he EOSC EU node
S ep 7. S a analysing you da a
S ep 2. Login he EOSC EU node
S ep 3. Check you ee c edi s
S ep 4. C ea e a VRE
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EOSC EU Node: h ps://open-science-cloud.ec.eu opa.eu
S ep 1
Sea ch o da a in
he EOSC EU node
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Acces o S o age, Compu e, No ebooks
S ep 2
Login he EOSC EU node
S ep 3
Check you ee c edi s
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2) Sea ch o da ase in EOSC EU Node
h ps://open-science-cloud.ec.eu opa.eu/ esou ces/all
Da ase o his wo kshop

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3) Explo e me ada a o he da ase
No e he RO-C a e Me ada a,a ligh weigh o ma o cap u e and package esea ch p ocesses
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4) Log in on EOSC SURF Node
h ps://eosc.nl
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5) C ea e new wo kspace "Rep oducibili y VRE"
Wo kspaces ha e been p epa ed o his wo kshop, wa ch he DEMO
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5) Selec collabo a i e o ganisa ion o new wo kspace
Wo kspaces ha e been p epa ed o his wo kshop, wa ch he DEMO
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5) Selec walle o new wo kspace
Wo kspaces ha e been p epa ed o his wo kshop, wa ch he DEMO

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5) Selec ca alog i em "Rep oducibili y VRE" o new wo kspace
Wo kspaces ha e been p epa ed o his wo kshop, wa ch he DEMO
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5) Selec cloud, ope a ing sys em and specs o new wo kspace
Wo kspaces ha e been p epa ed o his wo kshop, wa ch he DEMO
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5) Se inal de ails, including RO-C a e o new wo kspace
Wo kspaces ha e been p epa ed o his wo kshop, wa ch he DEMO
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5) C ea e new wo kspace "Rep oducibili y VRE"
Wo kspaces ha e been p epa ed o his wo kshop, wa ch he DEMO
The RO-C a e Me ada a o ms he ecipe o
he da a and so wa e in his Rep odocibili y
VRE
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11) Re- un all cells in he No ebook
[*] means “ his cell is unning o wai ing o un — he ke nel is busy.”

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12) Re iew he esul s, scan o ailu es
No e he numbe s in squa e b acke s nex o he cells, indica ing he execu ion o de
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13) Run he emaining no ebooks
Fo each epea s eps 9-12:
•Check i ke nel is se o ep oducibili y
oI no : swi ch ke nel
•Take a look a he no ebook (sc oll down)
•Re- un he no ebook
oRun -> Run All Cells
•Re iew he esul s, scan o ailu es
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Discussion and e alua ion