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Mitogenome and nuclear rRNA gene cluster of Austropeplea subaquatilis (Tate, 1880) from South Australia, with molecular and morphological comparison of A. cf. brazieri (Smith, 1882) from Victoria (Gastropoda, Hygrophila, Lymnaeidae)

Author: Chen, Zhe-Yu; Sukee, Tanapan; Koehler, Anson V.; Webster, Bonnie L.; Gasser, Robin B.; Ponder, Winston F.; Young, Neil D.
Publisher: Zenodo
DOI: 10.3897/zookeys.1255.164109
Source: https://zenodo.org/records/17318942/files/ZK_article_164109.pdf
41
Mi ogenome and nuclea RNA gene clus e o Aus opeplea
subaqua ilis (Ta e, 1880) om Sou h Aus alia, wi h molecula
and mo phological compa ison o A. c . b azie i (Smi h, 1882)
om Vic o ia (Gas opoda, Hyg ophila, Lymnaeidae)
Zhe-Yu Chen1, Tanapan Sukee1, Anson V. Koehle 1, Bonnie L. Webs e 2, Robin B. Gasse 1,
Wins on F. Ponde 3, Neil D. Young1
1 Depa men o Ve e ina y Biosciences, Melbou ne Ve e ina y School, Facul y o Science, The Uni e si y o Melbou ne, Pa k ille, VIC 3010, Aus alia
2 Depa men o Li e Science, Na u al His o y Museum, London, SW7 5BD, UK
3 Aus alian Museum Resea ch Ins i u e, Aus alian Museum, Sydney, NSW 2010, Aus alia
Co esponding au ho s: Zhe-Yu Chen ([email p o ec ed]); Neil D. Young ([email p o ec ed])
Copy igh : © Zhe-Yu Chen e al.
This is an open access a icle dis ibu ed unde
e ms o he C ea i e Commons A ibu ion
License (A ibu ion 4.0 In e na ional – CC BY 4.0).
Resea ch A icle
Abs ac
Species o Aus opeplea a e lymnaeid snails endemic o Aus alia and New Zealand,
and mos a e in e media e hos s o pa asi ic ema odes. Thei axonomy has long been
unce ain due o he high pheno ypic plas ici y o mos species. In his s udy, we used
Ox o d Nanopo e sequencing echnology o cha ac e ise he mi ogenome and nuclea
ibosomal RNA ( RNA) gene clus e o Aus opeplea subaqua ilis om Sou h Aus alia
o suppo compa a i e axonomic in es iga ions o his species. Then, A. subaqua ilis
was compa ed wi h A. c . b azie i a bo h mo phological and molecula le els. Mo pho-
logically, A. subaqua ilis and A. c . b azie i can be dis inguished by shell mo phome ic
indices, man le edge mo phology, pigmen a ion, and ep oduc i e and neu al ana omy.
The wo axa di e ed by 1.9% in bo h he mi ogenome and nuclea RNA gene clus e .
Sequence di e gence was p onounced in he in e nal ansc ibed space (ITS) egions
o he la e gene clus e , wi h nucleo ide di e ences o 13.8% in ITS1 and 8.2% in ITS2.
Phylogene ic analyses o sequence da a o he mi ochond ial 16S gene and ITS2 placed
he wo axa in dis inc g oups. Taken oge he , he in eg a i e e idence p esen ed he e-
in suppo ed species-le el di e gence be ween A. subaqua ilis and A. c . b azie i.
Key wo ds: Aus alia, eshwa e snails, in eg a i e axonomy, mi ochond ial genome,
molecula phylogeny, nuclea RNA gene clus e
In oduc ion
Lymnaeidae Ra inesque, 1815 (commonly known as pond snails) a e a glob-
ally dis ibu ed g oup o eshwa e hyg ophilid snails, which ha e a ac ed
widesp ead a en ion as in e media e hos s o a ious species o pa asi ic
ema odes (e.g., Vina ski e al. 2019, 2023; Vázquez e al. 2023). The Aus a-
lian na i e lymnaeid genus Aus opeplea Co on, 1942, is one o he ec o s
o Fasciola hepa ica (li e luke) disease in Aus alia and New Zealand (Bo ay
and McMichael 1961; Bo ay 1964a, 1969, 1978; Ponde and Wa e house 1997).
Academic edi o : Thie y Backeljau
Recei ed:
4 July 2025
Accep ed:
12 Sep embe 2025
Published:
9 Oc obe 2025
ZooBank: h ps://zoobank.
o g/602AF124-3022-4B8C-BE69-
C9F9006DE8CF
Ci a ion: Chen Z-Y, Sukee T, Koehle
AV, Webs e BL, Gasse RB, Ponde
WF, Young ND (2025) Mi ogenome
and nuclea RNA gene clus e o
Aus opeplea subaqua ilis (Ta e, 1880)
om Sou h Aus alia, wi h molecula
and mo phological compa ison o A.
c . b azie i (Smi h, 1882) om Vic o ia
(Gas opoda, Hyg ophila, Lymnaeidae).
ZooKeys 1255: 41–62. h ps://doi.
o g/10.3897/zookeys.1255.164109
ZooKeys 1255: 41–62 (2025)
DOI: 10.3897/zookeys.1255.164109
42
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
Bo ay and McMichael (1961) synonymised all 23 p e iously named Aus ope-
plea species o jus one species, Aus opeplea omen osa (P ei e , 1885), a
name based on New Zealand specimens, al hough hey ecognised wo dis inc
pheno ypes A and B. The ype A snails we e da ke wi h a smalle man le bo de ,
and had a mo e obus and opaque shell wi h a dis inc spi e, while ype B snails
we e ligh e wi h a much la ge man le bo de , and wi h a agile and anspa -
en shell wi h a sho spi e (Bo ay and McMichael 1961; Bo ay 1964b). Despi e
he exis ence o wo pheno ypes, Bo ay and McMichael (1961) a gued ha hey
we e all one species, based on assumed en i onmen -media ed di e ences in
snail pheno ype and hey ci ed e idence o success ul hyb idisa ion o he wo
pheno ypes unde labo a o y condi ions (Bo ay 1964b). In con as , Pusled-
nik e al. (2009), using mo phological and molecula e idence, indica ed ha
Aus alian Aus opeplea ep esen ed a dis inc lineage om he New Zealand
A. omen osa, and could be di ided in o di e en ope a ional axonomic uni s
(OTUs). Based on hese OTUs, Ponde e al. (2024) di ided he Aus alian Aus-
opeplea in o ou species in wo subgene a, Aus opeplea (Aus opeplea) b a-
zie i (Smi h, 1882) which is widely dis ibu ed in eas e n Aus alia, Aus opeplea
(Aus opeplea) subaqua ilis (Ta e, 1880) in Sou h Aus alia, and Aus opeplea
(Aus opeplea) huonensis (Tenison Woods, 1876) and Aus opeplea (Ku ikina)
hispida (Ponde & Wa e house, 1997) in Tasmania. Ne e heless, due o limi ed
de ined mo phological cha ac e s and he low phylogene ic esolu ion o cu -
en molecula ma ke s, comp ehensi e species delimi a ion emains lacking
o he nominal species o he han A. (K.) hispida. As a esul , he cu en clas-
si ica ion o species (o OTUs) wi hin he Aus alian membe s o ypical Aus o-
peplea la gely elies on geog aphic o igin a he han diagnos ic ea u es o he
specimens hemsel es. The e o e, de ailed mo phological and molecula cha -
ac e isa ion is needed o imp o e he axonomic esolu ion wi hin his genus.
The aim o his s udy was o cha ac e ise A. subaqua ilis om Sou h Aus alia
mo phologically and molecula ly, and hen compa e his species wi h A. c . b azie i
om Vic o ia, Aus alia o es ablish hei axonomic and phylogene ic ela ionship.
Ma e ials and me hods
Sample collec ion and p ese a ion
Aus opeplea subaqua ilis we e collec ed om “D ain M” nea P inces High-
way in Tho nlea, Sou h Aus alia, Aus alia (la i ude −37.36891397, longi-
ude 140.2052126). Aus opeplea c . b azie i we e p e iously collec ed om
a oadside i iga ion channel in We ibee Sou h, Vic o ia, Aus alia (la i ude
−37.944706, longi ude 144.698857) (see Sukee e al. 2024).
Bo h species o Aus opeplea we e hen cul u ed in aqua ia wi hin a desig-
na ed labo a o y a The Uni e si y o Melbou ne, Vic o ia, Aus alia. Snails om
di e en sou ces we e main ained in s ic isola ion in sepa a e anks con ain-
ing clean a i icial pond wa e wi h ae a ion. Wa e was changed egula ly and
he snails we e ed a comme cial ish die . A small sec ion (~5 mm) o he oo
muscle was excised om adul specimens and p ese ed in RNAla e a 4 °C
o 24 h, -20 °C o one mon h and hen s o ed a -80 °C un il u he p ocessing.
The emainde o each adul specimen was hen placed in 70% e hanol o sub-
sequen dissec ion and collec ion o mo phological ea u es.
43
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
G oss mo phology o ma u e snails
Animal ex e nal ea u es in he li ing s a e we e obse ed in he ield and in indi-
iduals main ained in cul u e. Ten and 13 indi iduals o A. subaqua ilis and A. c .
b azie i we e dissec ed o in e nal mo phological obse a ion espec i ely, all
indi iduals had a ained a body size su icien o o iposi ion. Te minology o
he cha ac e s ollowed Ponde and Wa e house (1997) and Vina ski and Poin -
ie (2023). Images o li ing animals we e cap u ed using a Canon® 5D Ma k IV
came a wi h a Canon® EF 100 mm /2.8L Mac o IS USM lens. P ese ed spec-
imens we e gen ly cleaned wi h so b ushes o emo e he coagula ed mucus
and dissec ed unde an Olympus SZ30 s e eomic oscope. De ailed images o
ana omical ea u es we e aken wi h he same Canon® 5D Ma k IV came a wi h
a Laowa® 25 mm /2.8 2.5-5X Ul a Mac o lens. The inal high dep h-o - ield im-
ages we e p oduced by a WeMac o® Rail Sys em and s acked om 20–30 sin-
gle pho os using Ze ene S acke ® 1.04. Ana omical illus a ions we e p epa ed
using a Wild M5 s e eomic oscope a ached wi h a d awing ube. All images
we e modi ied and assembled using Adobe Pho oshop 2023.
Scanning elec on mic oscopy
The adula sac was emo ed om h ee adul snails o each species and he
so issue emo ed using a 10% po assium hyd oxide (KOH) solu ion. A e
comple e dissolu ion o so issues, each adula was washed ex ensi ely in
MilliQ wa e . While s ill so , each adula ibbon was ans e ed on o a ound
co e slip (Ø 13 mm), ai -d ied and ixed in place. The co e slip was hen moun -
ed on o an aluminium s ub using conduc i e ca bon ape (P oSciTech P y L d).
A 4-μm hick gold coa ing was deposi ed on he adula su ace using Sa eMa -
ic® CCU-010 coa e . Radulae we e hen scanned using a Hi achi® SU7000 scan-
ning elec on mic oscope unde a low acuum mode (5 kV). Images gene a ed
om he middle de ec o we e used in his s udy.
DNA isola ion
Foo issue o a specimen o A. subaqua ilis ( ouche numbe : AB291) was e-
mo ed om he RNAla e and washed ex ensi ely in nuclease- ee wa e (Qia-
gen). DNA was hen isola ed om each sec ion o issue using he E.Z.N.A.
Mollusc DNA Ki acco ding o manu ac u e ’s ins uc ions (Omega Bio- ek Inc.).
The quan i y o DNA isola ed om each issue was de e mined using he Qubi
1X dsDNA HS Assay and a Qubi 2.0 Fluo ome e 2 (In i ogen, The moFishe ).
Ta ge -en iched ampli ica ion o mi ochond ial DNA
Ampli ica ion o he A. subaqua ilis mi ochond ial DNA was pe o med using he
REPLI-g mi ochond ial DNA ki (Qiagen) ollowing he manu ac u e ’s p o ocol us-
ing a cus om p ime mix ha was designed o ma ch conse ed egions o he lym-
naeid 12S and 16S mi ochond ial ibosomal subuni s and he cox1 gene. P ime s
we e 11–14 n in leng h and inco po a ed phospho o hioa e links be ween he las
h ee bases a he 3’ end o he p ime s (Table 1). A o al o 8 p ime s we e com-
bined in o a 100 µM s ock. Templa e DNA sample was dilu ed wi h wa e (supplied
44
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
om he ki ) o 150 ng in a o al olume o 20 µL. A esh ampli ica ion mix con-
aining he cus om p ime s was p epa ed as pe manu ac u e ’s ins uc ions (Qia-
gen). In b ie , 29 µL o DNA empla e and p ime mix was dena u ed a 75 °C o
5 min hen cooled o oom empe a u e. Nex , 1 µL o REPLI-g Midi Polyme ase
was added, and he sample was incuba ed a 33 °C o 8 h. Finally, he polyme ase
was deac i a ed by aising he empe a u e o 65 °C o 3 min. Ampli ied DNA was
quan i ied as desc ibed abo e and s o ed a 4 °C un il u he p ocessing.
Lib a y p epa a ion and long- ead sequencing
Fo A. subaqua ilis, a ba code was assigned o ampli ied DNA empla e using
he RAPID 24 (SQK-RBK114) ba coding lib a y ki (Ox o d Nanopo e Technolo-
gies) and loaded on o a R10.4.1 low cell and sequenced o 4 h on he P ome-
hION 2 Solo (Ox o d Nanopo e Technologies) sequencing pla o m. Pos -se-
quencing base-calling o POD5 da a was pe o med using he p og am Do ado
. 0.7.2 (Ox o d Nanopo e Technologies) in supe -accu a e mode and eads
we e s o ed in FASTQ o ma . Nanopo e long ead sequence da a o A. c . b a-
zie i was a ailable om a p e ious s udy (Sukee e al. 2024).
Clus e ing analyses, mi ochond ial genome assembly, and gene
anno a ions
Long eads wi h homology o e e ence mi ochond ial genomes o ibosomal
RNA subuni o eshwa e molluscs we e iden i ied using pbla . 2.5.1 (Wang
and Kong 2019) and ex ac ed om he aw long ead da a ile using seq k
. 1.4- 122 (h ps://gi hub.com/lh3/seq k/). A consensus mi ochond ial se-
quence o nuclea RNA gene clus e sequence was assembled using canu .
2.3 (h ps://gi hub.com/ma bl/canu) wi h minimum ead leng h se o 1,000 bp
and genome size se o 20,000 bp (mi ochond ial genome) o 8,000 bp (nu-
clea RNA gene clus e ). The A. subaqua ilis mi ochond ial genome was pe -
lima ly anno a ed using Geneious P ime . 2024.0.7 and MITOS . 2.0.2 (Be n
e al. 2013), hen manully cu a ed ollowing he sugges ed oles o molluscs
(Fou d ilis e al. 2018; Ghiselli e al. 2021). The published A. c . b azie i mi o-
chond ial genome (GenBank accession numbe PP100270) we e also u he
cu a ed acco ding o he same c i e ia. All sequence anno a ions and GC con-
en plo s we e isualised using he P oksee online se e (G an e al. 2023).
Table 1. Modi ied p ime s used o ampli y lymnaeid mi ochond ial DNA using he
REPLI-g mi ochond ial DNA ampli ica ion ki (Qiagen). As e isks ep esen he inco po-
a ed phospho o hioa e links.
P ime name P ime sequence Ta ge ed egion Di ec ion
RepGS_Aus 16F TACCTGTTTATC*A*A 16S Fo wa d
RepGS_16SBRis AACTCAGATCAT*G*T 16S Re e se
RepGS_12sF CAACGGCAATAT*A*T 12S Fo wa d
RepGS_12sR CTAGGATTAGAT*A*C 12S Re e se
RepGT_JB3 ATCCT GAGGTTT*A*T cox1 Fo wa d
RepGT_JB4.5 ACATAATGAAAA*T*G cox1 Re e se
RepGT_16sF CCTTTTGCATCA*T*G 16S Fo wa d
RepGT_16sR CGGTCTTAACTC*A*A 16S Re e se
45
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
Nucleo ide di e si y compa ison
Nucleo ide pai wise dis ances (p-dis ance) o comple e mi ochond ial genome,
he nuclea RNA gene clus e and each gene we e calcula ed in Geneious P ime
. 2024.0.7 a e alignmen wi h Clus al Omega . 1.2.3. Sliding window analy-
ses o nucleo ide di e si y (300-bp windows wi h 10-bp s eps o mi ochond ial
genome and 50-bp windows wi h 10-bp s eps o nuclea RNA gene clus e )
we e pe o med on he aligned mi ogenomes and nuclea RNA gene clus e o
A. c . b azie i and A. subaqua ilis using he PopGenome package (P ei e e al.
2014) in R. Fo each compa ison, nucleo ide di e si y alues we e plo ed using
he R package ggplo 2 (Wickham 2016). The GC/AT con en and skew alues
we e calcula ed using a cus om Py hon . 3.9.13 sc ip .
Phylogene ic analyses
To compa e A. c . b azie i and A. subaqua ilis samples wi h a ailable molec-
ula da a o Aus opeplea spp. (see Puslednik e al. 2009), phylogenies we e
econs uc ed using only he mi ochond ial 16S and nuclea ITS2 egions
(Suppl. ma e ial 1: able S1). O ien ogalba i idis was used as ou g oup (Liu
e al. 2012; Suwancha oen e al. 2023). The 16S and ITS2 sequences we e
aligned sepa a ely using MUSCLE . 3.7 in AliView . 1.28 and conca ena ed
using ca as a2phyml (h ps://gi hub.com/nylande /ca as a2phyml). Num-
be s o a iable and pa simony in o ma i e si es o he nucleo ide we e calcu-
la ed using MEGA . 11.0.13. Pa i ioned Maximum Likelihood (ML) analyses
wi h he majo i y- ule consensus ee we e pe o med in IQ-TREE . 1.6.12
(Minh e al. 2013) using Ul a as as boo s ap app oach (Minh e al. 2013)
wi h 10,000 ei e a ions. Bayesian in e ence (BI) was conduc ed in M Bayes
. 3.2.6 (Ronquis e al. 2012), wi h ou independen uns, each o which was
pe o med o 1,000,000 gene a ions and sampled e e y 1000 gene a ions
wi h he i s 25% samples disca ded as bu n-in. Con e gence o he Ma -
ko chain Mon e Ca lo simula ions was assessed o ensu e ha he a e age
s anda d de ia ion o spli equencies was < 0.01 and he po en ial scale e-
duc ion ac o s (PSRFs) we e ~1. Addi ionally, T ace . 1.7.2 (Rambau e al.
2018) was used o e i y ha all e ec i e sample size (ESS) alues exceeded
200. The mos app op ia e model o sequence e olu ion (ML: K2P+G4 o
ITS2 and K3Pu+F+G4 o 16S; BI: K2P+G4 o ITS2 and HKY+F+G4 o 16S)
was selec ed using ModelFinde (Kalyaanamoo hy e al. 2017).
Resul s
Mi ochond ial genome composi ion and compa ison
The mi ochond ial genomes (mi ogenome) o A. subaqua ilis (GenBank ac-
cession numbe PV749633) and A. c . b azie i (GenBank accession num-
be PP100270) a e 13,768 and 13,757 bp, espec i ely (Fig. 1A, B). Bo h
genomes con ain 37 genes: 13 p o ein-coding genes (PCGs), 2 ibosomal
RNA genes ( RNAs), and 22 ans e RNA genes ( RNAs) (Fig. 1A, B, Table
2). Eigh (nad4L, cy b, cox1, cox2, a p8, a p6, nad3, nad2) o he PCGs e -
mina e wi h a unca ed s op codon, which is assumed o be comple ed as

46
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
TAA by he addi ion o 3’ A esidues o he mRNA du ing ansc ip ion. The
a angemen o genes wi hin bo h mi ogenomes a e iden ical wi h only mi-
no di e ences in in e ed leng hs o non-coding RNA ( RNA-D, F, W, C, G,
H, Q, L2, M, T and K) and 12S genes (Table 2). The mi ogenome nucleo ide
composi ion o A. subaqua ilis is 32.8% A, 40.7% T, 12.4% C and 14.1% G,
esul ing in an AT con en o 73.4%, which is nea ly same as he 73.3% ob-
se ed in A. c . b azie i (wi h 32.8% A, 40.5% T, 12.5% C and 14.2% G). The
AT/GC skew alues o A. subaqua ilis and A. c . b azie i a e -0.1072/0.0624
and -0.1051/0.0612, espec i ely. The o e all plo s o GC con en in A. sub-
aqua ilis closely esembles hose obse ed in A. c . b azie i, wi h no subs an-
ial di e ences in con en o dis ibu ion pa e ns ac oss he mi ogenomes
(Fig. 1A, B). Bo h species exhibi highe GC con en in he cox3 and cox1
egions and educed GC con en in nad2, nad6, and 16S RNA. The o e all
mi ochond ial genome p-dis ance be ween A. subaqua ilis and A. c . b azie i
is 1.9%. The p-dis ance o each o he PCGs ange om 3.1% (nad5) o 0.6%
(16S) (Fig. 2A, Table 2).
Figu e 1. Re e ence mi ochond ial genome and nuclea RNA gene clus e o subaqua ilis (A, C) and Aus opeplea c .
b azie i (B, D). The di ec ion o gene ansc ip ion is shown wi h an a ow. In each panel GC con en is displayed ia he
obse ed skew pa e ns.
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ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
Nuclea RNA gene clus e composi ion and compa ison
The comple ed nuclea RNA gene clus e o A. subaqua ilis (GenBank acces-
sion no. PV593739) and A. c . b azie i (GenBank accession no. PV593740) span
6,712 bp and 6,747 bp espec i ely (Fig. 1C, D). The wo ibosomal DNA sequenc-
es exhibi simila o e all s uc u es, comp ising he 18S RNA, 5.8S RNA, 28S
RNA genes and wo in e nal ansc ibed space egions (ITS1 and ITS2) (Fig.
1C, D, Table 2). Bo h sequences sha e iden ical leng hs o he 5.8S RNA (158
bp). The 18S RNA and 28S RNA egions measu e 1,865 bp and 3,815 bp in A.
subaqua ilis, and 1,866 bp and 3,832 in A. c . b azie i, espec i ely. No able di e -
ences a e obse ed in he ITS egions: A. subaqua ilis con ained a 509 bp ITS1
and a 368 bp ITS2, whe eas A. c . b azie i possesses a 504 bp ITS1 and a 388
bp ITS2 (Table 2). The nuclea RNA gene clus e o A. subaqua ilis and A. c .
b azie i show simila nucleo ide composi ions: 22.8% A, 21.8% T, 25.7% C, and
29.7% G in A. subaqua ilis; 22.5% A, 22.0% T, 25.7% C, and 29.8% G in A. c . b a-
zie i. Bo h sequences ha e consis en GC con en (55.4% and 55.5%, espec i e-
ly) and simila GC skew alues, while A. subaqua ilis shows sligh ly highe AT
skew han A. c . b azie i (AT/GC skew: 0.0227/0.0715 and 0.0123/0.0737). The
GC con en plo s o he nuclea RNA gene clus e in Aus opeplea subaqua ilis
and A. c . b azie i a e simila (Fig. 1C, D). In bo h species, he GC con en plo s
exhibi se e al local maxima in GC p opo ion wi hin he cen al egion o he
28S RNA gene, while p onounced dec eases in GC p opo ion we e obse ed a
he bounda ies o he in e nal ansc ibed space s (ITS1 and ITS2), pa icula ly
a hei junc ions wi h he adjacen 5.8S and 28S RNA genes. The o e all nucle-
a RNA gene clus e p-dis ance be ween A. subaqua ilis and A. c . b azie i was
1.9%. While he RNA genes a e la gely iden ical (99%–100%), he ITS egions
exhibi subs an ial sequence di e gence, wi h he p-dis ance o ITS1 and ITS2
egions being 13.8% and 8.2%, espec i ely (Fig. 2B, Table 2).
Figu e 2. Sliding window analysis o he pai wise di e ences in he nucleo ide iden i y o Aus opeplea subaqua ilis and
Aus opeplea c . b azie i mi ochond ial genomes (A) and nuclea RNA gene clus e (B). Gene bounda ies a e indica ed
by e ical do ed lines. The ho izon al do ed line indica es he a e age nucleo ide di e si y be ween he wo sequences.
48
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
Table 2. Loca ion, leng hs, and di ec ions o anno a ed genes wi hin he mi ochond ial and nuclea RNA gene clus e s o
Aus opeplea subaqua ilis, wi h compa isons o Aus opeplea c . b azie i ( alues a e slash). Nucleo ide pai wise iden i y
o each gene be ween he wo species is shown.
Gene designa ions Loca ion s a Loca ion end Leng h (bp) Di ec ion Pai wise Iden i y p-dis ance
Mi ochond ial genes
16S 1/1 986/986 986/986 o wa d 99.4% 0.6%
RNA-L1( ag) 988/988 1051/1051 64/64 o wa d N/A N/A
RNA-P( gg) 1047/1047 1106/1106 60/60 o wa d N/A N/A
RNA-A( gc) 1107/1107 1170/1170 64/64 o wa d N/A N/A
nad6 1171/1171 1629/1629 459/459 o wa d 97.6% 2.4%
nad51631/1631 3277/3277 1647/1647 o wa d 96.9% 3.1%
nad1 3279/3279 4154/4154 876/876 o wa d 98.3% 1.7%
nad4L 4155/4155 4452/4452 298/298 o wa d 98.3% 1.7%
cy b 4453/4453 5533/5533 1081/1081 o wa d 98.3% 1.7%
RNA-D(g c) 5536/5536 5588/5587 53/52 o wa d N/A N/A
RNA-F(gaa) 5589/5588 5651/5650 63/63 o wa d N/A N/A
cox25652/5651 6294/6293 643/643 o wa d 98.3% 1.7%
RNA-Y(g a) 6297/6296 6346/6345 50/50 o wa d N/A N/A
RNA-W( ca) 6347/6346 6405/6405 59/60 o wa d N/A N/A
RNA-C(gca) 6410/6410 6468/6468 59/59 o wa d N/A N/A
RNA-G( cc) 6471/6470 6524/6522 54/53 o wa d N/A N/A
RNA-H(g g) 6527/6525 6583/6582 57/58 o wa d N/A N/A
RNA-Q( g) 6592/6591 6650/6649 59/59 e e se N/A N/A
RNA-L2( aa) 6651/6650 6703/6701 53/52 e e se N/A N/A
a p86705/6703 6855/6853 151/151 e e se 98.2% 1.8%
RNA-N(g ) 6857/6854 6920/6917 64/64 e e se N/A N/A
a p6 6921/6918 7560/7557 640/640 e e se 98.6% 1.4%
RNA-R( cg) 7561/7558 7623/7620 63/63 e e se N/A N/A
RNA-E(gaa) 7624/7621 7675/7672 52/52 e e se N/A N/A
12S 7676/7673 8393/8388 718/716 e e se 98.2% 1.8%
RNA-M(ca ) 8394/8389 8466/8457 73/69 e e se N/A N/A
nad38467/8458 8806/8797 340/340 e e se 99.1% 0.9%
RNA-S2( ga) 8817/8808 8871/8862 55/55 e e se N/A N/A
RNA-S1(gc ) 8872/8863 8926/8917 55/55 e e se N/A N/A
nad4 8927/8918 10252/10243 1326/1326 o wa d 98% 2%
RNA-T( g ) 10253/10244 10319/10311 67/68 e e se N/A N/A
cox3 10321/10313 11100/11092 780/780 e e se 98.8% 1.2%
RNA-I(ga ) 11141/11133 11205/11197 65/65 o wa d N/A N/A
nad2 11206/11198 12109/12101 904/904 o wa d 97.8% 2.2%
RNA-K( ) 12110/12102 12191/12180 82/79 o wa d N/A N/A
cox1 12203/12192 13694/13683 1492/1492 o wa d 97.7% 2.3%
RNA-V( ac) 13695/13684 13755/13744 61/61 o wa d N/A N/A
Nuclea RNA gene clus e
18S 1/1 1865/1865 1865/1865 o wa d 100% 0%
ITS1 1866/1866 2374/2369 509/504 o wa d 86.2% 13.8%
5.8S 2375/2370 2532/2527 158/158 o wa d 100% 0%
ITS2 2533/2528 2900/2915 368/388 o wa d 91.8% 8.2%
28S 2901/2916 6731/6747 3831/3832 o wa d 99.3% 0.7%
49
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
Phylogene ic analysis
Phylogene ic ees we e cons uc ed om a da ase consis ing o 29 16S +
ITS2 sequences o Aus opeplea, 27 o hem we e ob ained om p e ious s udy
(Puslednik e al. 2009), wo we e gene a ed o his s udy and one a ailable ou -
g oup axon (Liu e al. 2012; Suwancha oen e al. 2023). The aligned leng hs o
16S and ITS2 genes we e 433 and 452 nucleo ides, espec i ely. Wi hin hese
sequences, 79 and 87 si es we e a iable, while 69 and 46 si es we e pa si-
mony in o ma i e. The Bayesian-in e ed (BI) and maximum likelihood (ML)
phylogene ic ees o Aus opeplea we e no ully esol ed. Ne e heless, bo h
Bayesian pos e io p obabili ies (BPP) and ML boo s ap (BS) alues suppo ed
sepa a ion be ween Aus alian and New Zealand species. Aus opeplea hispida
was eco e ed as sis e o he emaining Aus alian species, which oge he
o med a icho omy in he in e ed opology (Fig. 3). The sequences gene a ed
he e o Aus opeplea subaqua ilis and A. c . b azie i g oup wi h he sou he n
Aus alian and eas e n Aus alian samples om p e ious s udy, espec i ely.
Taxonomic accoun
Aus opeplea subaqua ilis (Ta e, 1880)
Figs 4A, C, E, 5A, C, 6A, C, 7A
Ma e ial examined. Specimens om “D ain M” nea P inces Highway in Tho n-
lea, Sou h Aus alia, Aus alia, and hei a i icially b ed o sp ing.
Desc ip ion. Shell (Fig. 4A) medium in size (up o 12.5 mm in heigh ), o a e,
wi h low, na ow conical spi e and s ongly in la ed las who l. Shell wall hin,
agile in some specimens. Who ls (4.0–4.5 in numbe ) ounded, sligh ly con-
ex, sepa a ed by a shallow, sligh ly oblique o nea ly s aigh su u e. Las who l
comp ises ~0.9 o shell heigh . Shell su ace smoo h, somewha shiny, ligh
b own o nea ly colou less, co e ed by collab al g ow h lines. Ape u e py i-
o m, wi h e enly ounded basal and pala al ma gins, pos e io co ne o ming
angle wi h las who l. Pe is ome sha p, no expanded bu columella lip e lexed
and a ached o back o las who l. Pa ie al callus hin bu dis inc , ex ending
o las who l a beyond inne lip. Columella old weakly de eloped. Umbilicus
co e ed by inne lip, closed o e y na ow (slo -like).
Head- oo (Fig. 4C, E) ypical o amily. Foo b oad, eaching 1.5–2× shell
heigh when ully ex ended, ligh g ey wi h spa se whi e eckles (obse ed
when li ing). When s imula ed, conside able quan i ies o mucus p oduced and
co e s en i e body. Ten acles shield-shaped (Fig. 4E), wice as long as wide
(obse ed when li ing). Man le ligh g ey wi h la ge black blo ches on pallial
oo . Man le colla (Fig. 4E) e lexed and a ached o shell, ex ended as hin
lap on bo h sides o enclose shell ully o la gely in ma u e indi iduals. Closed
edge o man le colla si ua ed along midline o animal, o ming ma ginal old
nea shell apex. Man le co e ing isce al coil wi h band-like black pigmen in
ma u e indi iduals (Fig. 4C); disconnec ed om pigmen a ion on pallial oo ,
and eadily los in p ese ed specimens.
Cen al ne ous sys em ypical o amily (Fig. 5A). Ce eb al ganglia wi h eg-
ula bo de s, pale yellow ( esh). Commissu al lobule dis inc , whi e, app oxi-
ma ely equal o ce eb al ganglia in size.
56
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
The man le pigmen on he isce al coil o ma u e indi iduals o A. subaqua i-
lis does no occu in A. c . b azie i. The in e nal pigmen a ion o A. subaqua ilis
is gene ally ligh e han ha o A. c . b azie i. The di e ence in he ela i e size
o he bulbous e mina ion o he p aepu ium is a consis en dis inc ion in he
male ep oduc i e sys em o he wo species, as a e he shape o he spe ma-
heca and he wid h o he spe ma hecal duc in he emale sys em. Apa om
he la ge commissu al lobule in A. c . b azie i, ma u e A. subaqua ilis o med a
dis inc ly dema ca ed and ellipsoid lobe om each ce eb al ganglion si ua ed
opposi e he commissu al lobule (namely adjacen o he buccal mass).
Discussion
This s udy used an in eg a i e app oach, combining mo phological da a, mi og-
enome and nuclea RNA gene clus e compa isons and phylogene ic analyses
o assess he ela ionship be ween A. subaqua ilis and A. c . b azie i. Based on
mo phological ea u es, hese wo snail axa could be eadily dis inguished.
The comple e mi ochond ial and nuclea RNA gene clus e s sequenced and
compa ed he ein a e some o he i s such da a se s o he amily Lymnaeidae
and a e among he e y ew a ailable o he o de Hyg ophila (McQui k e al.
2025). Analysis o mi ochond ial and nuclea ma ke s showed no signi ican
di e ence in gene o de o s uc u e, al hough su icien phylogene ically in o -
ma i e si es we e epo ed o sugges ha hei di e gence co esponded o
species-le el di e en ia ion, and hus suppo ed ou mo phological indings.
The pa e ns o nucleo ide di e gence in mi ochond ial genes and he nuclea
RNA clus e s o A. subaqua ilis and A. c . b azie i a e dis inc . Mos mi ochon-
d ial genes exhibi low pai wise nucleo ide di e gence be ween he wo species.
Fo ins ance, he nucleo ide p-dis ance o he cox1 gene is 2.3%, a alue ha was
a he h eshold be ween in a- and in e speci ic a ia ion in o he lymnaeid ax-
onomic s udies (Bolo o e al. 2014; Vina ski e al. 2016, 2022; Akseno a e al.
2017, 2024; Lounnas e al. 2018; Fe ei a e al. 2021; Falniowski e al. 2023), and
is compa able o he minimal gene ic di e gence (p-dis ance = 2.4%) obse ed be-
ween Ladisla ella um okensis and L. elodes, and be ween Galba cubensis and G.
neo opica (see Vina ski e al. 2016; Fe ei a e al. 2021). Mo eo e , he mi ochon-
d ial 16S RNA gene shows he lowes p-dis ance (0.6%) among all mi ochond ial
genes be ween he wo species, u he suppo ing p e ious indings ha mi o-
chond ial 16S RNA alone lacked su icien phylogene ic esolu ion o delimi Aus-
alian Aus opeplea species (Puslednik e al. 2009; Sukee e al. 2024). In con as ,
al hough he sequences o he h ee nuclea RNA genes (18S, 5.8S, 28S) o he wo
species a e nea ly iden ical, he obse ed di e ences in ITS egions (p-dis ance
= 13.8% o ITS1; p-dis ance = 8.2% o ITS2) all wi hin he ange o in e speci ic
di e gence commonly used in cu en lymnaeid axonomic p ac ices (see Vina ski
e al. 2016; Fe ei a e al. 2021; Akseno a e al. 2024). The highe di e gence in ITS
egions compa ed wi h mi ochond ial genes may sugges he p esence o in o-
g ession and incomple e lineage so ing wi hin Aus alian Aus opeplea (see Da is
and Nixon 1992; Doyle 1992; Ha ison and La son 2014). Labo a o y expe imen s
showed ha ma ing be ween species o Aus opeplea was possible (Bo ay 1964b),
al hough he e ili y o hyb id o sp ing had no been demons a ed.
Despi e he limi a ions o using 16S gene and ITS2 ma ke s alone o his
g oup, we p oceeded o use only hese egions o make a phylogene ic compa i-

57
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
son wi h da a a ailable o Aus opeplea. The opology o he 16S + ITS2 phyloge-
ne ic ees in his s udy and ha o Puslednik e al. (2009) we e la gely consis en .
The newly sequenced A. subaqua ilis and A. c . b azie i we e placed in wo
geog aphically s uc u ed lineages wi hin Aus opeplea (sou he n e sus eas -
e n Aus alia), consis en wi h egional s uc u ing a he han cons i u ing de-
ini i e e idence o species le el di e gence. Ne e heless, he limi a ions o he
cu en ma ke s we e e iden , as he main Aus alian Aus opeplea lineage and
se e al wi hin g oup ela ionships showed poly omies, indica ing un esol ed
ela ionships. These un esol ed nodes may ha e e lec ed limi ed phylogene ic
signal, apid adia ion, o incomple e lineage so ing, and hus wa an u he
in es iga ion using addi ional gene ic ma ke s. Fu u e s udies employing com-
ple e mi ochond ial genome sequences and nuclea RNA gene clus e s a e
wa an ed o add ess he un esol ed ela ionships wi hin he genus.
The mo phological ea u es o A. subaqua ilis and A. c . b azie i gene ally co -
esponded o he ype B and ype A mo phs, espec i ely, as desc ibed by Bo ay
and McMichael (1961). Mo phologically, he di e ences be ween he wo spe-
cies we e p ima ily ocused on he shell, man le ex ension, ne ous sys em, and
he ep oduc i e sys em. The di e ences in he ep oduc i e sys em be ween
A. subaqua ilis and A. c . b azie i we e dis inc . The mo phological di e ence in
he bulbous e mina ion o he p aepu ium may sugges ed unde lying in e nal
s uc u al di e ences, which wa an u he in es iga ion in u u e s udies. The
ne ous sys ems o A. subaqua ilis and A. c . b azie i di e ed, pa icula ly in
he size o he commissu al lobule and he p esence o addi ional lobes a ising
om he ce eb al ganglia in A. subaqua ilis. These di e ences we e no epo -
ed in p e ious s udies. The lack o compa a i e neu oana omical s udies on
his g oup cu en ly limi ed ou abili y o assess whe he hese ea u es we e
s uc u ally signi ican o how hey ela ed o o he membe s o he Lymnaei-
dae. Fu he esea ch is needed o cla i y hei na u e and axonomic ele ance.
The wo unique ea u es men ioned by Puslednik e al. (2009) o he Sou h
Aus alian samples (A. subaqua ilis in his s udy), namely he longe cephalic
en acles ( wice as long as wide) and he p os a e ( ube) being much longe
han he emale ep oduc i e sys em, we e also obse ed in his s udy. Howe -
e , he ecogni ion o hese ai s is la gely depended on how much con ac ion
had occu ed due o p ese a ion, as hese ea u es we e less p onounced in
con ac ed ma e ial compa ed o he o he dis inguishing ea u es no ed abo e.
The ex e nal ea u es o he head- oo and man le o A. subaqua ilis includ-
ed a b oad oo wi h he shell en eloped by he man le. In i s na u al habi a ,
A. subaqua ilis was obse ed li ing in ex emely dense wa e mil oil (My iophyl-
lum spp.) en i onmen s, which p esumably necessi a ed mo ing be ween igh ly
packed b anches. The educ ion o shell- ela ed hind ance may ha e enhanced
he animal’s abili y o su i e in such en i onmen s. The abno mally high mucus
p oduc ion in A. subaqua ilis when s imula ed may ha e se ed as an al e na i e
de ence mechanism agains p eda o s, pe haps compensa ing o he agile
shell. This ai was commonly obse ed in land slugs and semi-slugs (Luch el
and Dey up-Olsen 2001). The man le ex ension may also ha e unc ioned o en-
hance cu aneous espi a ion, he eby educing he equency o su acing o ai
o adap ing o hypoxic condi ions caused by in ensi ied espi a ion o aqua ic
plan s a nigh (Russell-Hun e 1978). The deg ee o man le ex ension has no
been well cha ac e ised ac oss species in his amily, wi h only he Eu ope-
58
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
an Myxas glu inosa (O. F. Mülle , 1774) explici ly documen ed as ha ing a ully
shell-en eloping man le, simila o wha was obse ed in A. subaqua ilis (Huben-
dick 1951; S adnichenko 2004). Howe e , based on he phylogene ic ela ion-
ships o Aus opeplea om Tasmania and Sou h Aus alia econs uc ed in his
s udy and p e ious esea ch (Puslednik e al. 2009), i appea ed ha he de el-
opmen o man le ex ensions in Aus opeplea was no an isola ed occu ence.
Bo ay and McMichael (1961) no ed ha man le ex ension in hei ype B mo phs
ended o diminish o disappea o e successi e labo a o y gene a ions. This ob-
se a ion closely esembled he dwa o ms we obse ed. Howe e , hese dwa
indi iduals egained man le ex ension once placed in a ou able en i onmen al
condi ions, in con as o A. c . b azie i, in which his ai appea ed o be pe ma-
nen ly absen . Fu he s udies a e equi ed o cla i y he mechanism o man le
ex ension and o de e mine i s biological o ecological ele ance.
Taken oge he , he in eg a i e e idence p esen ed he ein suppo ed spe-
cies-le el di e gence be ween A. subaqua ilis and A. c . b azie i. While mi o-
chond ial di e gence alone app oached he h eshold o in e speci ic sepa a-
ion, he p onounced di e ences in ITS egions, along wi h he mo phological
ai s, p o ided a cohe en amewo k o species delimi a ion. Ne e heless,
he phylogeny o his g oup emains poo ly esol ed. Con inued e o s in ol -
ing addi ional phylogene ically in o ma i e gene ic da ase s and compa a i e
ana omical s udies will be essen ial o esol ing ou s anding axonomic un-
ce ain ies and unde s anding he e olu iona y dynamics o his g oup.
Acknowledgemen s
We a e g a e ul o Ms Ch is ine Ande sen, P o . Ian Be e idge, and M Kasem
D i e o hei in aluable suppo du ing he ieldwo k.
Addi ional in o ma ion
Con lic o in e es
The au ho s ha e decla ed ha no compe ing in e es s exis .
E hical s a emen
No e hical s a emen was epo ed.
Use o AI
No use o AI was epo ed.
Funding
This s udy was suppo ed by he Aus alian Resea ch Council Disco e y P ojec no.
DP230100270.
Au ho con ibu ions
All au ho s ha e con ibu ed equally.
Au ho ORCIDs
Zhe-Yu Chen h ps://o cid.o g/0000-0002-4150-8906
Tanapan Sukee h ps://o cid.o g/0000-0003-3181-5045
59
ZooKeys 1255: 41–62 (2025), DOI: 10.3897/zookeys.1255.164109
Zhe-Yu Chen e al.: Molecula and mo phological compa ison o wo Aus opeplea spp.
Anson V. Koehle h ps://o cid.o g/0000-0001-8330-6416
Bonnie L. Webs e h ps://o cid.o g/0000-0003-0930-9314
Robin B. Gasse h ps://o cid.o g/0000-0002-4423-1690
Wins on F. Ponde h ps://o cid.o g/0000-0002-8600-3952
Neil D. Young h ps://o cid.o g/0000-0001-8756-229X
Da a a ailabili y
All o he da a ha suppo he indings o his s udy a e a ailable in he main ex o
Supplemen a y In o ma ion.
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Supplemen a y ma e ial 1
Loca ion, code, and NCBI GenBank accession numbe s o he lymnaeid
snail nucleo ide sequences used in his s udy
Au ho s: Zhe-Yu Chen, Tanapan Sukee, Anson V. Koehle , Bonnie L. Webs e , Robin B.
Gasse , Wins on F. Ponde , Neil D. Young
Da a ype: pd
Copy igh no ice: This da ase is made a ailable unde he Open Da abase License
(h p://openda acommons.o g/licenses/odbl/1.0/). The Open Da abase License
(ODbL) is a license ag eemen in ended o allow use s o eely sha e, modi y, and
use his Da ase while main aining his same eedom o o he s, p o ided ha he
o iginal sou ce and au ho (s) a e c edi ed.
Link: h ps://doi.o g/10.3897/zookeys.1255.164109.suppl1