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The conserved 3' UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration.

Abstract

Small noncoding RNAs (sRNAs) from mRNA 3' UTRs seem to present a previously unrecognized layer of bacterial post-transcriptional control whereby mRNAs influence each other's expression, independently of transcriptional control. Studies in Escherichia coli and Salmonella enterica showed that such sRNAs are natural products of RNase E-mediated mRNA decay and associate with major RNA-binding proteins (RBPs) such as Hfq and ProQ. If so, there must be additional sRNAs from mRNAs that accumulate only under specific physiological conditions. We test this prediction by characterizing candidate NarS that represents the 3' UTR of nitrate transporter NarK whose gene is silent during standard aerobic growth. We find that NarS acts by Hfq-dependent base pairing to repress the synthesis of the nitrite transporter, NirC, resulting in mRNA cross-regulation of nitrate and nitrite transporter genes. Interestingly, the NarS-mediated repression selectively targets the nirC cistron of the long nirBDC-cysG operon, an observation that we rationalize as a mechanism to protect the bacterial cytoplasm from excessive nitrite toxicity during anaerobic respiration with abundant nitrate. Our successful functional assignment of a 3' UTR sRNA from a non-standard growth condition supports the notion that mRNA crossregulation is more pervasive than currently appreciated.

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The conserved 3' UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration.

Author: Wang, Chuan,Chao, Yanjie,Matera, Gianluca,Gao, Qian,Vogel, Jörg
Publisher: Oxford Academic
Year: 2019
DOI: 10.1093/nar/gkz1168
Source: https://repository.helmholtz-hzi.de/bitstream/10033/622083/1/Kalodimou%20et%20al.pdf
i uses
A icle
A Soluble Ve sion o Nipah Vi us Glycop o ein G
Deli e ed by Vaccinia Vi us MVA Ac i a es Speci ic
CD8 and CD4 T Cells in Mice
Geo gia Kalodimou 1,2, S enja Vei 1, Syl ia Jany 1, Ul ich Kalinke 3, Ch is ophe C. B ode 4,
Ge d Su e 1,2,* and Asisa Volz 1,2
1Ins i u e o In ec ious Diseases and Zoonoses, LMU Munich, 80539 Munich, Ge many;
geo gia.kalodimou@mic o. e med.uni-muenchen.de (G.K.); [email p o ec ed] (S.V.);
[email p o ec ed] (S.J.); asisa. olz@mic o. e med.uni-muenchen.de (A.V.)
2Ge man Cen e o In ec ion Resea ch (DZIF), pa ne si e Munich, 80539 Munich, Ge many
3Ins i u e o Expe imen al In ec ion Resea ch, TWINCORE, Cen e o Expe imen al and Clinical In ec ion
Resea ch, a join en u e be ween he Helmhol z Cen e o In ec ion Resea ch B aunschweig and he
Hanno e Medical School, 30625 Hanno e , Ge many; Kalinke.Ul ich@mh-hanno e .de
4Depa men o Mic obiology and Immunology, Uni o med Se ices Uni e si y o he Heal h Sciences,
Be hesda, MD 20814, USA; ch is ophe .b [email p o ec ed]
*Co espondence: [email p o ec ed]; Tel.: +49-89-2180-2514
Recei ed: 28 No embe 2019; Accep ed: 20 Decembe 2019; Published: 24 Decembe 2019


Abs ac :
Nipah i us (NiV) is an eme ging zoono ic i us ha is ansmi ed by ba s o humans and
o pigs, causing se e e espi a o y disease and o en a al encephali is. An ibodies di ec ed agains
he NiV-glycop o ein (G) p o ein a e known o play a majo ole in clea ing NiV in ec ion and in
p o iding accine-induced p o ec i e immuni y. Mo e ecen ly, T cells ha e been also shown o be
in ol ed in eco e y om NiV in ec ion. So a , ela i ely li le is known abou he ole o T cell
esponses and he an igenic a ge s o NiV-G ha a e ecognized by CD8 T cells. In his s udy, NiV-G
p o ein se ed as he a ge immunogen o ac i a e NiV-speci ic cellula immune esponses. Modi ied
Vaccinia i us Anka a (MVA), a sa e y- es ed s ain o accinia i us o p eclinical and clinical
accine esea ch, was used o he gene a ion o MVA–NiV-G candida e accines exp essing di e en
e sions o ecombinan NiV-G. O e lapping pep ides co e ing he en i e NiV-G p o ein we e used
o iden i y majo his ocompa ibili y complex class I/II- es ic ed T cell esponses in ype I in e e on
ecep o -de icien (IFNAR
−
/
−
) mice a e accina ion wi h he MVA–NiV-G candida e accines.
We ha e iden i ied an H2-b- es ic ed noname pep ide epi ope wi h CD8 T cell an igenici y and a
H2-b 15me wi h CD4 T cell an igenici y in he NiV-G p o ein. The iden i ica ion o his epi ope and
he a ailabili y o he MVA–NiV-G candida e accines will help o e alua e NiV-G-speci ic immune
esponses and he po en ial immune co ela es o accine-media ed p o ec ion in he app op ia e
mu ine models o NiV-G in ec ion. O no e, a soluble e sion o NiV-G was ad an ageous in ac i a ing
NiV-G-speci ic cellula immune esponses using hese pep ides.
Keywo ds: eme ging i uses; accina ion; MVA ec o accines; T cell esponses
1. In oduc ion
Nipah i us (NiV) is an eme ging zoono ic pa hogen o global conce n ha was anked ecen ly
by he Wo ld Heal h O ganiza ion (WHO) as a high-p io i y pa hogen. NiV is a nega i e-sense,
single-s anded RNA i us ha is a membe o he genus Henipa i us ( amily Pa amyxo i idae). NiV was
i s iden i ied du ing a la ge ou b eak a ec ing humans and pigs in Malaysia and Singapo e in 1999 [
1
].
F om 2001 onwa ds, seasonal ou b eaks a e obse ed almos annually in Bangladesh and spo adically
Vi uses 2020,12, 26; doi:10.3390/ 12010026 www.mdpi.com/jou nal/ i uses
Vi uses 2020,12, 26 2 o 24
in India [
2
]. Recen ou b eaks occu ed in Ke ala in May 2018 and June 2019, he i s ime NiV eme ged
in sou he n India [
2
]. Two s ains o NiV ha e been iden i ied, Malaysia and Bangladesh s ains, which
sha e 91.8% sequence homology [
3
]. NiV causes se e e espi a o y disease and encephali is [
4
–
6
], wi h
a e age case a ali y a es (CFR) o 40–75% [
7
]. Mo eo e , long- e m neu ological sequelae and e en
elapse o encephali is a e obse ed in many su i o s o in ec ions wi h bo h s ains o NiV [8–10].
The na u al ese oi o NiV and Hend a i us (HeV) a e he ui ba s o he genus P e opus,
which a e widely dis ibu ed in Asia, Aus alasia, and pa s o A ica [
11
,
12
]. Mo eo e , NiV has a
b oad species opism and can cause disease in a many animal species [
13
–
15
]. NiV can in ec humans
ia se e al ou es, which include he consump ion o ood con amina ed wi h ba sec e ions [
16
],
ansmission om ampli ica ion hos s such as pigs [
4
], and di ec human- o-human ansmission
be ween e y close con ac s [
17
]. Cu en ly he e a e no licensed ea men s o p e en a i e accines
a ailable o use in humans, which make he de elopmen o e ec i e p ophylac ic measu es impe a i e.
E idence o da e indica es ha he Henipa i us glycop o ein G is a highly p omising a ge o
i us-neu alizing an ibodies o coun e ac in ec ions wi h highly pa hogenic henipa i uses. The G
glycop o eins o NiV and HeV sha e 83% amino acid sequence homology and a e ype II ansmemb ane
p o eins[
18
]. Theglycop o einso bo h i uses bind o hehos cell ecep o seph in-B2and eph in-B3[
19
–
22
],
which a e highly conse ed ac oss many species [
23
]. To da e, he mos p omising he apeu ic app oach
agains Henipa i us in ec ion is he one based on he applica ion o he expe imen al human monoclonal
an ibody m102.4, which binds he eph in-B2 and eph in-B3 ecep o -binding si e on he glycop o eins o
HeV (HeV-G) and NiV (NiV-G) [
24
]. The p o ec i e e icacy o m102.4 has been success ully e alua ed
in di e en p eclinical models including e e s and A ican g een monkeys (AGM) [25–27].
Cu en ly, se e al accines deli e ing NiV-G ha e been shown o p o ec agains le hal challenge
in ec ions in p eclinical es ing. These candida e accines include ecombinan i uses de eloped using
accinia i us [
28
], cana ypox [
29
], esicula s oma i is i us (VSV) [
30
–
34
], abies i us [
35
], measles
i us [
36
], and adeno i us pla o ms [
37
,
38
]. To da e, he only licensed Henipa i us accine is he equine
accine agains HeV, Equi ac
®
HeV, which was app o ed o use in ho ses in Aus alia in 2012 [
39
].
This accine is a subuni accine, which comp ises he soluble o m o HeV-G (HeVsG) [
19
,
39
–
41
].
The subuni HeVsG accine has been shown o p o ec agains NiV in ca s [
42
], e e s [
43
], and non-human
p ima es [
44
], bu no in pigs [
45
]. The abili y o HeVsG o p o ec agains NiV in ec ion in some animal
models wa an s he e alua ion o a accine ha con ains a soluble o m o NiV glycop o ein G.
The ole o an ibodies in p o ec i e immuniza ion agains NiV in ec ion has been widely epo ed,
howe e he e is limi ed in o ma ion on NiV-speci ic T-cell-media ed immuni y. Consequen ly, i is o
in e es o be e unde s and he ole o T cells in accine-induced p o ec ion agains NiV. This, in u n,
will aide in he de elopmen o new and imp o ed accine candida es.
In his s udy, we in es iga ed ecombinan Modi ied Vaccinia i us Anka a (MVA) o deli e y o
NiV-G an igens [
46
]. We cons uc ed wo MVA–NiV-G accine candida es o exp ess ull-leng h NiV-G
o he soluble o m NiVsG. The candida e accines we e gene ically s able and e icien ly eplica ed in
p ima y chicken emb yo ib oblas s, a cell cul u e sys em used o manu ac u ing o MVA accines.
Impo an ly, accina ion o mice lacking he in e e on alpha/be a ecep o (IFNAR
−
/
−
) elici ed eadily
de ec able NiV-G-speci ic CD8 and CD4 T cells. We iden i ied a po en ial H2-b- es ic ed epi ope
in he NiV-G ha s imula ed an igen-speci ic CD8 T cells and a po en ial H2-IAb- es ic ed epi ope
ha s imula ed an igen-speci ic CD4 T cells. In e es ingly, in compa ison wi h ull-leng h NiV-G, he
soluble an igen NiVsG induced signi ican ly s onge epi ope-speci ic T cell esponses. Ou wo k will
be ele an o u u e s udies cha ac e izing NiV-G-speci ic T cell esponses in NiV p eclinical models.
2. Ma e ials and Me hods
2.1. Mice
IFNAR
−
/
−
mice [
47
] backc ossed mo e han 20- old on he C57BL/6 backg ound (we e b ed
unde speci ied-pa hogen- ee (SPF) condi ions, housed in isola ed cage uni s (IsoCage, Tecniplas ,
Vi uses 2020,12, 26 3 o 24
Hohenpeißenbe g, Ge many) and had access o ood and wa e ad libi um. All expe imen s we e
app o ed by he Go e nmen o Uppe Ba a ia, Munich Ge many and we e pe o med in compliance
wi h he Ge man Animal Wel a e Ac (55.2Ve -2532.Ve _02-17-93, 09.01.2017).
2.2. Cells
P ima y chicken emb yo ib oblas s (CEF) we e isola ed om 10-day-old SPF chicken
emb yos (VALO, Cuxha en, Ge many) and g own in Minimum Essen ial Medium (MEM)
(Sigma-Ald ich, Tau ki chen, Ge many) supplemen ed wi h 10% hea -inac i a ed e al bo ine se um
(FBS) (Sigma-Ald ich), 1% Penicillin–S ep omycin (Sigma-Ald ich), and 1% MEM nonessen ial
amino acid solu ion (Sigma-Ald ich). Human HeLa cells (ATCC CCL-2) we e main ained in
MEM supplemen ed wi h 10% hea -inac i a ed FBS (Sigma-Ald ich) and he abo e an ibio ics.
DF-1 cells (ATCC CRL-12203) we e g own in VLE Dulbecco’s Modi ied Eagle’s Medium (DMEM)
(Me ck, Da ms ad , Ge many) supplemen ed wi h 10% hea -inac i a ed FBS (Sigma-Ald ich), 1%
Penicillin–S ep omycin (Sigma-Ald ich), 1% MEM nonessen ial amino acid solu ion (Sigma-Ald ich),
and 1% HEPES solu ion (Sigma-Ald ich). Cells we e main ained a 37
◦
C in a humidi ied 5%
CO2a mosphe e.
2.3. Plasmid Cons uc ions
The cDNA ha encoded o he en i e 602 amino acid sequence o he NiV-G p o ein (Nipah
i us isola e UMMC1, GenBank accession numbe AY029767.1) was modi ied in silico by in oducing
silen codon al e a ions o emo e e mina ion signals o accinia i us ea ly ansc ip ion (TTTTTNT)
and G/C nucleo ide uns. Fo cons uc ion o he soluble o m o NiV-G p o ein (NiVsG), he
cy oplasmic and ansmemb ane domains we e dele ed and an in e nal leade sequence and amino
acid linke sequences we e added as desc ibed p e iously [
40
,
48
]. Fo accinia i us (VACV)-speci ic
ansc ip ional egula ion, we placed he NiVsG gene sequences unde con ol o he syn he ic VACV
ea ly/la e p omo e (PmH5) [
49
] and used he s ong na u al ea ly VACV p omo e P g [
50
–
52
] o
exp ession o NiV-G sequences. The cDNAs encoding o NiV-G o NiVsG including he clea age si es
o he es ic ion endonucleases Xhol and Apal we e gene a ed by DNA syn hesis (GeneWiz, Leipzig,
Ge many). cDNA sequences we e cloned in o he MVA ans e plasmid pLW-73 [
53
], which di ec s
inse ion o he e ologous sequences o a si e be ween he open eading ames (ORF) o he essen ial
i al genes, MVA069R and MVA070L.
2.4. Gene a ion o Recombinan Vi uses
Recombinan MVA i uses exp essing he NiVsG and NiV-G p o eins we e gene a ed as desc ibed
p e iously [
54
,
55
]. To summa ize, CEF cells a 80–90% con luence we e in ec ed wi h non ecombinan
MVA (clonal isola e MVA F6) a a mul iplici y o in ec ion (MOI) o 0.05 and ans ec ed wi h ec o
plasmid DNA con aining NiVsG o NiV-G gene sequences using X- emeGENE
™
HP DNA T ans ec ion
Reagen (Roche Diagnos ics, Penzbe g, Ge many). A e 48 h incuba ion, cells we e ha es ed, and
he ecombinan i uses MVA–NiVsG and MVA–NiV-G we e clonally isola ed by sc eening o
co-exp ession o he luo escen p o ein ma ke GFP and plaque passaging se e al imes. Resul an
ec o i us isola es we e quali y con olled using s anda d p o ocols [
54
]. Polyme ase chain eac ion
(PCR) analysis o genomic i al DNA se ed o con i m he gene ic iden i y and genomic s abili y o
he MVA ec o i uses. The eplica i e capaci y o he ecombinan MVA–NiV i uses compa ed wi h
non ecombinan MVA was es ed by mul i-s ep g ow h expe imen s in CEF and human HeLa cells.
To gene a e accine p epa a ions, ecombinan MVA–NiV i uses we e ampli ied in CEF, pu i ied by
ul acen i uga ion h ough 36% suc ose cushions, and econs i u ed in 10 mM T is-HCl bu e , pH 9.0,
o make s ock p epa a ions [54].
Vi uses 2020,12, 26 4 o 24
2.5. Wes e n Blo Analysis o Recombinan P o eins
CEF and HeLa cells we e in ec ed wi h ecombinan MVA–NiVsG and MVA–NiV-G i uses a
a MOI o 5. Cells in ec ed wi h MVA (MOI 5) and inocula ion medium alone (mock) we e used as
con ols. Cell lysa es we e p epa ed o cul u e supe na an s we e collec ed a a ious ime poin s a e
in ec ion and s o ed a
−
80
◦
C. Cell-associa ed and sec e ed p o eins we e esol ed by sodium dodecyl
sul a e (SDS)-polyac ylamide (10%) gel elec opho esis (SDS-PAGE), and p o eins we e ans e ed
on o ni ocellulose memb anes by we elec oblo ing. To in es iga e he glycosyla ion pa e n, p o eins
we e p e ea ed using he P o ein Deglycosyla ion Mix II ki (New England Biolabs, Ipswich, MA,
USA) acco ding o he manu ac u e ’s ins uc ions p io o SDS PAGE. Memb anes we e blocked wi h
blocking bu e , which consis ed o PBS con aining 5% non- a d ied milk powde (Ca l Ro h, Ka ls uhe,
Ge many) and 0.1% / Tween 20 (Sigma-Ald ich) o one hou a oom empe a u e. Memb anes
we e hen p obed wi h he p ima y an ibody (polyclonal mouse an i-NiV-G (1:2000) o polyclonal
abbi an i-NiV-G (1:5000)) dilu ed in blocking bu e o e nigh a 4
◦
C. Memb anes we e washed h ee
imes wi h PBS con aining 0.1% Tween 20 (PBS/T) and p obed wi h goa an i-mouse IgG conjuga ed
o ho se adish pe oxidase (HRP) (1:5000; Agilen Dako, Glos up, Denma k) o goa an i- abbi IgG
HRP (1:5000; Cell Signaling Technology, Leiden, The Ne he lands). Memb anes we e washed again
wi h PBS/T and we e de eloped using Supe Signal
®
Wes Du a Ex ended Du a ion subs a e (The mo
Fishe Scien i ic, Planegg, Gemany). Blo s we e isualized using a Mic oChemi 4.2 image (DNR
Bio-Imaging Sys ems, Ne e Yamin, Is ael).
2.6. Immuno luo escence
Con luen monolaye s o HeLa cells we e in ec ed wi h ecombinan MVA–NiVsG o MVA–NiV-G
i uses a MOI 0.05. Con ols included MVA (MOI 0.05) and inocula ion medium alone (mock).
A e in ec ion, cells we e incuba ed o 16 h in a 37
◦
C incuba o . Cells we e ixed wi h 4%
pa a o maldehyde (PFA) (Sigma-Ald ich) and on some occasions, pe meabilized wi h 0.5% T i on
X-100 (Sigma-Ald ich). Cells we e blocked in blocking bu e con aining 1% bo ine se um albumin
(BSA) (Sigma-Ald ich). Cells we e s ained wi h polyclonal abbi an i-NiV-G dilu ed 1:10,000 in PBS
con aining 0.5% BSA (PBS/BSA). Cells we e washed wi h PBS and s ained wi h he seconda y an ibody
goa an i-mouse IgG Alexa Fluo (AF) 568 (1:1000; The mo Fishe Scien i ic) dilu ed in PBS/BSA bu e .
Fluo escence was isualized using he Keyence BZ-X710 mic oscope (Keyence, Osaka, Japan).
2.7. Immuniza ion Expe imen s in Mice
Mice we e immunized wi h 10
8
PFU in 50
µ
L accine bu e (10 mM T is and 140 mM NaCl,
pH 7.4) o ecombinan MVA–NiVsG, ecombinan MVA–NiV-G o MVA o accine bu e as a mock
accine con ol ia he in ape i oneal o in amuscula ou es. Mice ecei ed ei he one (p ime) o wo
(p ime-boos ) immuniza ions o e a 21 day in e al. Fo T cell analysis, mice we e eu hanized 8 days
a e immuniza ion. Blood was collec ed on days 0, 18, and 31. Coagula ed blood was cen i uged a
1300
×
g o 5 min in MiniCollec ials (G eine Bio-One, Alphen aan den Rijn, The Ne he lands) in
o de o sepa a e se um, which was subsequen ly s o ed a −20 ◦C un il u he use.
2.8. Quan i ica ion o To al An igen-Speci ic IgG An ibodies
An igen-speci ic IgG esponses induced by immuniza ion wi h he accine candida es we e
analyzed by enzyme-linked immunoso ben assay (ELISA) using pu i ied soluble ecombinan NiV
glycop o ein G exp essed in mammalian HEK293 cells. Fla bo om 96-well ELISA pla es (Nunc
™
MaxiSo p
™
Pla es, The mo Scien i ic) we e coa ed wi h 50 ng/well ecombinan p o ein (100
µ
L olume)
and incuba ed o e nigh a 4
◦
C. Pla es we e washed h ee imes wi h 200
µ
L/well PBS/T. Pla es we e
blocked wi h blocking bu e con aining 1% bo ine se um albumin (Sigma-Ald ich) and 0.15 M suc ose
(Sigma-Ald ich) in PBS o 1 h a 37
◦
C. Pla es we e hen washed wi h PBS/T as desc ibed abo e.
Se a we e se ially dilu ed in PBS con aining 1% BSA (PBS/BSA) h ee- old down he pla e, s a ing a
Vi uses 2020,12, 26 5 o 24
a dilu ion o 1:100 (100
µ
L olume/well) and incuba ed o 1 h a 37
◦
C. A e washing, pla es we e
incuba ed wi h 100
µ
L/well goa an i-mouse IgG conjuga ed HRP (1:2000; Agilen Dako, Denma k)
dilu ed in PBS/BSA o 1 h a 37
◦
C. Pla es we e hen washed wi h PBS/T as desc ibed ea lie . Then,
100
µ
L/well 3,3
0
, 5,5
0
-Te ame hylbenzidine (TMB) Liquid Subs a e Sys em o ELISA (Sigma-Ald ich)
was added, and pla es we e incuba ed un il a colo change was obse ed. The eac ion was s opped by
he addi ion o 100
µ
L/well S op Reagen o TMB Subs a e (450 nm, Sigma-Ald ich). The abso bance
was measu ed on an ELISA pla e eade a 450 nm wi h a 620 nm e e ence wa eleng h. To al IgG
i e s we e calcula ed om he in lec ion poin o he i a ion cu e as loga i hms o he ecip ocal.
2.9. Gene a ion o Syn he ic Pep ides, Design o Pep ide Pools, and Pep ide P edic ion
The p o ein sequence o NiV-G was ob ained om he UniP o da abase (ID: Q9IH62). Using an
in silico app oach, we iden i ied 130 indi idual syn he ic pep ides ha spanned he ex e nal domain
NiV-G p o ein, s a ing om he hi d amino acid o he N- e minal side o he C e minus (amino
acids 73–602). Ou pep ide lib a y consis ed o 15me pep ides ha o e lapped by 11me . All pep ides
we e syn hesized by The mo Fishe Scien i ic as c ude ma e ial (<50% pu i y) on a 1–4 mg scale.
The wo-dimensional pep ide pool ma ix sys em was used o sc eening [
56
,
57
]. B ie ly, pep ides we e
o ganized in o wo-dimensional ma ix pep ide pools (H1–H10 and V1–V11) con aining 11–13 pep ides.
Fo mapping o po en ial CD8 T cell epi opes in posi i e 15me pep ides, e e y possible sequence o
pep ides 8–11me in leng h was de e mined. Theo e ical pep ides we e hen analyzed o binding o
he mouse majo his ocompa ibili y complex (MHC) class I allele H2-b using he SYFPEITHI da abase.
The pep ides o each amino acid sequence leng h we e syn hesized and es ed. Fo iden i ica ion o
CD4 T cell epi opes, MHC class II binding p edic ions we e pe o med on 15me pep ides ound wi hin
posi i e pep ide pools iden i ied by IFN-
γ
Enzyme-Linked Immunospo assay (ELISPOT). Using he
MHC Class II Binding, T Cell Epi ope P edic ion esou ce o he Immune Epi ope Da abase (IEDB,
h ps://www.iedb.o g/), pep ides es ic ed o mouse MHC class II allele H2-IAb we e analyzed using
“IEDB Recommended” p edic ion me hod [
58
]. The mos p omising candida es we e hen chosen o
u he expe imen al epi ope p edic ion s udies. All pep ides we e dissol ed o a concen a ion o
2 mg/mL in PBS, aliquo ed, and s o ed a −20 ◦C un il use.
2.10. T Cell Analysis
2.10.1. Enzyme-Linked Immunospo assay (ELISPOT)
T cell analysis by ELISPOT was pe o med as desc ibed p e iously [
55
]. B ie ly, spleens
we e collec ed om mice 8 days a e he inal immuniza ion. Single-cell suspensions we e
p epa ed by easing spleens h ough a 70
µ
m cell s aine (Falcon
®
Co ning, Co ning, NY,
USA). Red blood cells (RBC) we e emo ed using Red Cell Lysis Bu e (Sigma-Ald ich), and
cells we e washed and esuspended in RPMI-10, which consis ed o RPMI-1640 (Sigma-Ald ich)
con aining 10% hea -inac i a ed FBS (Sigma-Ald ich) and 1% Penicillin–S ep omycin (Sigma-Ald ich).
Fo expe imen s ha equi ed CD4 and CD8 T cell pu i ica ion, splenocy es we e incuba ed wi h
mouse CD4 and CD8 Mic oBeads (Mil enyi Bio ec, Be gisch Gladbach, Ge many) and p ocessed by
nega i e selec ion using he Quad oMACS Sepa a o (Mil enyi Bio ec).
IFN-
γ
-p oducing cells we e measu ed by IFN-
γ
ELISPOT assay using he Mouse IFN-
γ
ELISpo PLUS ki (Mab ech, S ockholm, Sweden) as desc ibed in he manu ac u e ’s p o ocol.
In summa y, 2
×
10
5
splenocy es we e seeded on o 96-well la bo om pla es (100
µ
L/well) (Sa s ed ,
Nümb ech , Ge many), and 100
µ
L/well pep ide pools, subpools, o indi idual pep ides we e added
(each pep ide dilu ed o 2
µ
g/mL in RPMI-10). A e mixing, he splenocy e/pep ide mix u es we e
ans e ed on o pla es p ecoa ed wi h IFN-
γ
de ec ion an ibody and incuba ed o 48 h a 37
◦
C.
Nons imula ed cells we e used as a mock con ol, and he posi i e con ols cul u es we e ea ed
wi h pho bol my is a e ace a e (PMA) and ionomycin (bo h om Sigma-Ald ich) o accinia i us
(VACV)-speci ic CD8 T cell epi ope, B8R
20–27
(TSYKFESV) [
59
]. A e incuba ing, pla es we e p ocessed

Vi uses 2020,12, 26 6 o 24
as desc ibed in he ki manu ac u e ’s p o ocol (Mab ech). Spo s we e coun ed and analyzed using he
Au oma ed ELISPOT pla e eade (A. EL. VIS Eli.Scan and A. EL. VIS ELISPOT Analysis So wa e,
Hanno e , Ge many).
2.10.2. In acellula Cy okine S aining and Flow Cy ome y
Splenocy es we e dilu ed o 1
×
10
7
cells/mL in RPMI-10, and 100
µ
L/well (1
×
10
6
cells) was
added on o a 96-well U-bo om pla e. Then, 100
µ
L/well pep ide dilu ed o 16
µ
g/mL in RPMI-10 was
added o gi e a inal pep ide concen a ion o 8
µ
g/mL. The VACV CD8 T cell epi ope B8R
20–27
( inal
concen a ion o 8
µ
g/mL) was used as a posi i e con ol along wi h PMA (10 ng/mL) plus ionomycin
(500 ng/mL). PBS dilu ed in RPMI-10 was used as a mock s imula ed con ol. A e pla ing, cells we e
incuba ed o 2 h a 37
◦
C. Then, 20
µ
L/well 10x B e eldin A, a Golgi inhibi o ha was p epa ed by
dilu ing 1000X B e eldin A (Biolegend, San Diego, CA, USA) in RMPI-10, was added o gi e a inal
dilu ion o 1x B e eldin A. Cells we e hen incuba ed o an addi ional 4 h a 37
◦
C. A e incuba ing,
pla es we e cen i uged (500 g o 3 min), and he supe na an was emo ed. Cells we e washed
once wi h 200
µ
L/well FACS bu e (MACSQuan Running Bu e wi h 2% FBS). Ex acellula s aining
was pe o med wi h he ollowing an ibodies dilu ed in FACS bu e : an i-mouse CD3 phycoe i h in
(PE)-Cy7 (clone 17A2, 1:100, Biolegend), an i-mouse CD4 B illian Viole 421 (clone GK1.5, 1:600,
Biolegend), an i-mouse CD8
α
Alexa Fluo 488 (clone 53-6.8, 1:300, Biolegend), and pu i ied CD16/CD32
(Fc block; clone 93, 1:500, Biolegend). Cells we e s ained in 50
µ
L/well o 30 min on ice in he da k, hen
washed once wi h 200
µ
L/well FACS bu e and hen wice wi h 200
µ
L/well PBS. Cells we e hen s ained
wi h 100
µ
L/well o he ixable dead cell iabili y dye Zombie Aqua (1:800, Biolegend) dilu ed in PBS
o 30 min on ice in he da k. Cells we e washed wice wi h 200
µ
L/well PBS and ixed wi h 100
µ
L/well
o Fixa ion Bu e (Biolegend) o 20 min a oom empe a u e in he da k. Cells we e washed wice
wi h 200
µ
L/well PBS and esuspended in 200
µ
L/well FACS bu e . Pla es we e s o ed o e nigh a
4
◦
C, p o ec ed om ligh . The ollowing day, cells we e pe meabilized by washing h ee imes wi h
200
µ
L/well 1
×
Pe m Wash bu e , which con ained In acellula S aining Pe meabiliza ion Wash Bu e
(10
×
) (Biolegend) dilu ed o 1
×
wi h dis illed wa e . Cells we e s ained in acellula ly in 100
µ
L/well o
an i-mouse IFN-
γ
(clone XMG1.2, 1:200, Biolegend) plus TNF-
α
(clone MP6-XT22, 1:200, Biolegend)
dilu ed in 1X Pe m Wash bu e o 30 min a oom empe a u e, p o ec ed om ligh . Cells we e hen
washed h ee imes wi h 200
µ
L/well 1X Pe m Wash and hen esuspended in 300
µ
L/well FACS bu e .
Samples we e il e ed h ough 50
µ
m nylon mesh (Se a P y L d., Hun ingwood, NSW, Aus alia)
in o 5 mL ound bo om FACS ubes (Sa s ed ). Single-colo con ols we e p epa ed o each FACS
analysis using OneComp eBeads
™
Compensa ion Beads (eBioscience, The mo Fishe Scien i ic) o
luo opho e-conjuga ed an ibodies and cells o he iabili y dye Zombie Aqua. Da a acquisi ion was
pe o med by MACSQuan VYB Flow Analyse (Mil enyi Bio ec), and da a was analyzed using FlowJo
(FlowJo LLC, BD Li e Sciences, Ashland, OR, USA).
2.11. S a is ical Analysis
Da a we e analyzed using G aphPad P ism e sion 5.0 (G aphPad So wa e Inc., San Diego,
CA, USA) and we e exp essed as mean
±
s anda d e o o he mean (SEM). S a is ical analysis was
pe o med using he unpai ed, wo- ailed - es o compa e wo g oups and one-way ANOVA o
compa e h ee o mo e g oups. The h eshold o s a is ical signi icance was p<0.05.
3. Resul s
3.1. Gene a ion and Cha ac e isa ion o MVA Vec o Vaccines Deli e ing NiV-G An igens
To gene a e he ecombinan MVA i uses deli e ing NiV-G an igens, we used he gene om NiV
Malaysia (isola e UMMC1, GenBank accession numbe AY029767.1) and gene a ed codon-op imized
gene sequences encoding a ull-leng h glycop o ein G (NiV-G) o a soluble ex e nal domain G
p o ein (NiVsG). These syn he ic gene sequences we e placed unde he ansc ip ional con ol o he
Vi uses 2020,12, 26 7 o 24
accinia i us-speci ic p omo e s P g o PmH5 and in oduced in o he MVA genome by homologous
ecombina ion a ge ing he in e genic si e be ween he essen ial MVA genes 069 and 070L. The clonal
isola ion o he ecombinan i uses MVA–NiVsG and MVA–NiV-G was acili a ed by he co-p oduc ion
o he g een luo escen epo e p o ein (GFP), as p e iously desc ibed [
54
]. The inal ecombinan
i uses con aining he NiV-G gene sequences (MVA–NiV-G and MVA–NiVsG) we e ob ained a e
emo al o he GFP epo e gene by in agenomic homologous ecombina ion (Figu e S1A, ma ke gene
dele ion). To e i y he iden i y o he desi ed modi ica ion, we pe o med he s anda d quali y con ol
expe imen s as desc ibed p e iously [
54
]. PCR analysis o i al genomic DNA con i med he p ope
inse ion o he ecombinan gene sequences a he a ge si e in he genome o MVA (Figu e S1B–E)
and he gene ic cha ac e is ics and s abili y o he ecombinan MVA i uses. We assessed he g ow h
beha io o he ecombinan i uses MVA–NiVsG and MVA–NiV-G in mul i-s ep g ow h analyses
in human HeLa cells and p ima y CEF, which a e ou inely used o ampli ica ion o ecombinan
MVA in accine manu ac u ing (Figu e S1F). MVA–NiVsG and MVA–NiV-G e icien ly eplica ed
in CEF and demons a ed an inc ease o in ec i i y i e s ha was compa able o ha ob ained wi h
non ecombinan MVA. Howe e , MVA–NiV-G and MVA–NiVsG did no p oduc i ely g ow in human
HeLa cells, con i ming ha hey had e ained he cha ac e is ic eplica ion de iciency o MVA in cells
o mammalian o igin. These indings co obo a ed he expec ed MVA pheno ype and con i med ha
he ecombinan i uses could be handled unde labo a o y condi ions o biosa e y le el 1. O no e, we
o iginally gene a ed ano he ecombinan MVA i us using he syn he ic ea ly–la e p omo e PmH5
o ansc ip ional con ol o ecombinan gene exp ession and p oduc ion o he ull-leng h NiV-G
p o ein. Howe e , upon g ow h es ing, his candida e i us ailed o each le els o in ec ious p ogeny
in CEF o be eligible o la ge-scale ampli ica ion as needed o accine p oduc ion p ocesses.
3.2. Cha ac e isa ion o Recombinan NiV-G P o eins
Ou accine candida es, MVA–NiVsG and MVA–NiV-G, should p oduce ecombinan NiV
glycop o ein G in i s ull-leng h o m (NiV-G) and, in pa allel, he soluble o m (NiVsG). NiV-G is a 602
amino acid long p o ein consis ing o an N- e minal in e nal domain, a ansmemb ane domain, and a
C- e minal ex e nal domain (Figu e 1A). Fo NiVsG p o ein, an in e nal leade sequence and h ee
amino acid linke s ha e eplaced he in e nal and ansmemb ane domains (Figu e 1A), as desc ibed
p e iously [
19
,
48
]. We assessed he co ec exp ession and s udied he cellula localiza ion o he
NiV-G and NiVsG by immuno luo escence mic oscopy o MVA–NiV-in ec ed cells immunolabeled
wi h an i-NiV-G an ibody, ollowed by a luo escen ly labelled seconda y an ibody. Cell nuclei we e
s ained wi h DAPI (300 nM). As an icipa ed, we obse ed di e en pa e ns o g een luo escence,
wi h a ying cellula localiza ions depending on he MVA–NiV cons uc . G een luo escence, speci ic
o NiV-G, was iden i ied in pe meabilized and nonpe meabilized cells in ec ed wi h MVA–NiV-G
(Figu e 1B), bu no in MVA-in ec ed o mock con ol cells. This da a con i med ha he ecombinan
ull-leng h NiV-G p o ein encoded by MVA–NiV-G was indeed ancho ed on he cell su ace. In con as ,
he NiV-G-speci ic s aining in cells in ec ed wi h MVA–NiVsG i us appea ed o be p edominan ly
loca ed wi hin he cells and was eadily de ec ed a e pe meabiliza ion. As an icipa ed, we ailed
o de ec NiVsG in conside able amoun s wi hou pe meabiliza ion, con i ming ha NiVsG was no
exp essed on he cell su ace (Figu e 1B).
To u he in es iga e he syn hesis o NiV-G p o eins a e in ec ion wi h MVA–NiVsG and
MVA–NiV-G, espec i ely, o al p o eins om in ec ed CEF and HeLa cell cul u es we e analyzed
by Wes e n blo using a NiV-G-speci ic an ibody. To al cell lysa es o cul u e supe na an s ob ained
om CEF and HeLa cul u es in ec ed wi h ecombinan MVA i us we e sepa a ed by SDS-PAGE and
immunoblo ed. We speci ically de ec ed a p o ein wi h an es ima ed molecula mass o app oxima ely
72–75 kDa in lysa es om CEF cells and HeLa cells in ec ed ei he wi h MVA–NiV-G o MVA–NiVsG
(Figu e 1C). In he cell lysa es, he glycop o ein was i s de ec able a 4 h pos -in ec ion. The amoun
o p o ein inc eased o e ime, esul ing in a p ominen band a 16 h pos -in ec ion, which was
main ained h oughou he 72 h ime cou se. To moni o he elease o ecombinan NiV-G p o ein
Vi uses 2020,12, 26 8 o 24
om MVA–NiVsG in ec ed cells, we also analyzed he supe na an s o in ec ed CEF and HeLa cell
cul u es. A p o ein wi h a molecula mass o app oxima ely 72–75 kDa sized band was obse ed in
supe na an s om MVA–NiVsG-in ec ed cells (Figu e 1C), indica ing ha in ec ed cells we e sec e ing
he soluble NiV-G p o ein. Sec e ed NiV-G p o ein was i s obse ed a 16 h pos -in ec ion in he
supe na an s o MVA–NiVsG-in ec ed cul u es and became especially p ominen by 24 h pos -in ec ion.
The le els o sec e ed NiV-G seemed o decline by 72 h pos -in ec ion. We did no howe e de ec
NiV-G p o ein in supe na an s o MVA–NiV-G-in ec ed cells.
Vi uses 2020, 12, x FOR PEER REVIEW 8 o 25
Figu e 1. Analysis o ecombinan Nipah i us ull-leng h glycop o ein G (NiV-G) p o ein p oduced
by cells in ec ed wi h MVA–NiVsG and MVA–NiV-G. (A) Schema ic diag am o ecombinan NiV
ull-leng h glycop o ein G (NiV-G) and NiV soluble glycop o ein G (NiVsG). Colo ed ec angles
ep esen indi idual p o ein domains, and b acke ed ex displays he s a and end o amino acid
sequences o each domain. (B) Immuno luo escence s aining o cells in ec ed wi h MVA–NiVsG and
MVA–NiV-G. HeLa cells we e in ec ed a MOI 0.05 wi h he abo e i uses o 16 h. MVA and mock
Figu e 1.
Analysis o ecombinan Nipah i us ull-leng h glycop o ein G (NiV-G) p o ein p oduced by
cells in ec ed wi h MVA–NiVsG and MVA–NiV-G. (
A
) Schema ic diag am o ecombinan NiV ull-leng h
Vi uses 2020,12, 26 9 o 24
glycop o ein G (NiV-G) and NiV soluble glycop o ein G (NiVsG). Colo ed ec angles ep esen
indi idual p o ein domains, and b acke ed ex displays he s a and end o amino acid sequences o
each domain. (
B
) Immuno luo escence s aining o cells in ec ed wi h MVA–NiVsG and MVA–NiV-G.
HeLa cells we e in ec ed a MOI 0.05 wi h he abo e i uses o 16 h. MVA and mock in ec ed HeLa
cells we e used as con ols. Fixed pe meabilized and ixed nonpe meabilized cells we e immunos ained
wi h abbi polyclonal an ibody o NiV-G and he seconda y an ibody an i- abbi Alexa Fluo 488.
Nuclei we e s ained wi h DAPI solu ion. Panel shows ep esen a i e pic u es o ixed/pe meabilized
and ixed/nonpe meabilized in ec ed HeLa cells a 40
×
magni ica ion. (
C
) Wes e n blo analysis o
ecombinan NiV-G p o eins p oduced by chicken emb yo ib oblas s (CEF) and HeLa cells in ec ed
wi h MVA–NiVsG and MVA–NiV-G. Lysa es and cul u e supe na an s we e collec ed om cell
cul u es in ec ed a MOI 5 wi h he abo e i uses, wild- ype MVA o nonin ec ed con ols (mock).
Samples we e collec ed a indica ed hou s pos -in ec ion. Cell lysa es and p o eins we e es ed by
immunoblo ing using a NiV-G-speci ic polyclonal mouse an ibody. P o ein bands co esponding o
he expec ed molecula weigh s o ecombinan NiV-G and NiVsG p o ein (~65
−
70 kDa) a e indica ed.
(
D
) Wes e n Blo analysis o ecombinan p o eins p oduced by DF-1 cells in ec ed wi h MVA–NiVsG
and MVA–NiV-G a MOI 5 o 36 h. MVA and mock in ec ed cells we e used as con ols. Cell lysa es
and cul u e supe na an s we e incuba ed wi h (+) o wi hou (
−
) enzymes o deglycosyla e p o eins,
analyzed by SDS-PAGE, and immunoblo ed wi h a abbi polyclonal an ibody o NiV-G. Be a-ac in
was used as a loading con ol o lysa es. Solid black a ow ep esen s glycosyla ed ecombinan NiV-G
and NiVsG p o ein (~65–70 kDa), and dashed black a ow ep esen s deglycosyla ed ecombinan
NiV-G and NiVsG p o ein (~58 kDa). Blue solid a ow ep esen s be a-ac in (~40 kDa). MVA: modi ied
Vaccinia i us Anka a.
Since he NiVsG gene encoding sequences we e modi ied o esul in he sec e ed soluble e sion
(sG), we pe o med addi ional Wes e n blo expe imen s o de e mine whe he he p o ein s ill
main ained glycosyla ion si es compa able o wild- ype NiV-G. Lysa es and supe na an s ob ained
om cul u es o DF-1 cells in ec ed wi h MVA–NiVsG we e ea ed wi h enzymes ha deglycosyla e
p o eins and analyzed by wes e n blo ing. Enzyme ea men esul ed in a educ ion in he molecula
mass o ecombinan NiVsG p o ein om 70–75 kDa o 58–60 kDa (Figu e 1D), ma ching he expec ed
size o unmodi ied G p o ein. This sugges ed ha ecombinan NiVsG has e ained he no mal
glycosyla ion pa e n o wild- ype NiV-G.
3.3. An ibody Responses in Vaccina ed IFNAR−/−Mice
To assess he immunogenici y o he ecombinan MVA–NiV-G/NiVsG candida e accines, we
accina ed IFNAR
−
/
−
mice wi h 10
8
PFU ia he in amuscula ou e a days 0 and 21. Se um samples
we e es ed o NiV-G-binding IgG an ibodies by ELISA 18 days a e he i s immuniza ion (P ime)
and 10 days a e he second immuniza ion (P ime-Boos ) (Figu e 2). E en a single applica ion o
he MVA–NiV-G accines induced abundan le els o NiV-G-speci ic IgG an ibodies in he mice.
A e boos e immuniza ion, all accina ed animals p oduced e en highe le els o ci cula ing
NiV-G-speci ic an ibodies, wi h he an ibody i e s inc easing by app oxima ely en- old.
Vi uses 2020,12, 26 16 o 24
3.4.4. Iden i ica ion o Po en ial H2-IAb-Res ic ed CD4 T Cell Epi opes o NiV-G
Ini ially, we also analyzed pu i ied CD4 T cell cul u es om MVA–NiVsG immunized mice o
hei abili y o s imula e IFN-
γ
by ELISPOT using a wo-dimensional pooled-pep ide ma ix sys em
(Figu e 3A, Sec ion 3.4.1). In con as o CD8 T cell-en iched splenocy es, he IFN-
γ
SFC signals in
hese cul u es we e lowe (Figu es 3B and 6A). In o de o de e mine de ini i ely which pep ide pools
we e abo e backg ound le els, we selec ed a cu o alue o 20 IFN-
γ
SFC/10
6
cells (Figu e 6A, g ey
line). Mean IFN-
γ
SFC alues abo e backg ound we e obse ed in 8 ou o he 21 pools (pools H3, H4,
V2, V3, V5, V6, V9, and V11) (Figu e 6A).
Vi uses 2020, 12, x FOR PEER REVIEW 18 o 25
Figu e 6. Ac i a ion o an igen-speci ic CD4 T cells a e immuniza ion wi h he ecombinan MVA
candida e accines exp essing NiV-G o NiV-sG. G oups o IFNAR−/− mice (n = 2–7) we e immunized
wice wi h MVA–NiVsG, MVA–NiV-G, MVA, o saline (mock) ia he i.p. o i.m. ou e o e a 21 day
pe iod. Eigh days a e he inal immuniza ion, CD4 T cell-en iched splenocy es o o al splenocy es
we e es imula ed and measu ed by IFN-γ ELISPOT assay o IFN-γ in acellula cy okine s aining
(ICS) plus FACS analysis. (A) Sc eening o H2-IAb- es ic ed T cell epi opes o NiV-G in CD4 T cell-
en iched splenocy es ob ained om i.p. immunized mice. T cell esponses we e measu ed by IFN-γ
ELISPOT assay. G aph shows IFN-γ SFC o CD4 T cell-en iched splenocy es s imula ed wi h pep ide
Figu e 6.
Ac i a ion o an igen-speci ic CD4 T cells a e immuniza ion wi h he ecombinan MVA
candida e accines exp essing NiV-G o NiV-sG. G oups o IFNAR
−
/
−
mice (n=2–7) we e immunized

Vi uses 2020,12, 26 17 o 24
wice wi h MVA–NiVsG, MVA–NiV-G, MVA, o saline (mock) ia he i.p. o i.m. ou e o e a
21 day pe iod. Eigh days a e he inal immuniza ion, CD4 T cell-en iched splenocy es o o al
splenocy es we e es imula ed and measu ed by IFN-
γ
ELISPOT assay o IFN-
γ
in acellula cy okine
s aining (ICS) plus FACS analysis. (
A
) Sc eening o H2-IAb- es ic ed T cell epi opes o NiV-G
in CD4 T cell-en iched splenocy es ob ained om i.p. immunized mice. T cell esponses we e
measu ed by IFN-
γ
ELISPOT assay. G aph shows IFN-
γ
SFC o CD4 T cell-en iched splenocy es
s imula ed wi h pep ide pools H1–H10 and V1–V11. The g ey dashed line ep esen s he g oup mean
cu o alue (20 IFN-
γ
SFC/10
6
cells) o iden i ying posi i e pep ide pools. (
B,C
) Iden i ica ion o
H2-IAb- es ic ed candida e epi opes o NiV-G by IFN-
γ
ICS and FACS analysis. To al splenocy es
om i.m. immunized mice we e es imula ed wi h wo p omising candida e H2-IAb- es ic ed 15me
pep ides, #49 (LFMTNVWTPPNPNTV) and #50 (NVWTPPNPNTVYHCS), iden i ied by pep ide pool
sc eening and in silico H2-IAb-binding p edic ions using he IEDB da abase. (
B
) Rep esen a i e low
cy ome y do plo s showing IFN-
γ
p oduc ion in he splenic CD4 T cell compa men . (
C
) F equency
and absolu e numbe (pe 10
6
splenocy es) o IFN-
γ
+CD4 T cells. Dashed line on g aphs ep esen
he cu o o de ini i ely posi i e samples. Di e ences be ween indi idual g oups we e analyzed
by one-way ANOVA and Tukey pos -hoc es . As e isks ep esen s a is ically signi ican di e ences
be ween wo g oups o a speci ic pep ide. * p<0.05, ** p<0.01.
In o de o iden i y po en ial CD4 T cell epi opes o H2-IAb, we pe o med a compu a ional
analysis o he 15me pep ides in he i e mos posi i e pep ide pools measu ed by ELISPOT assay
(pools H3, H4, V3, V6, and V9). Using MHC II binding p edic ions ob ained om he IEDB online
esou ce, we ound wo p omising pep ides. These pep ides we e #49 (LFMTNVWTPPNPNTV) and
#50 (NVWTPPNPNTVYHCS) (Table 2). Nex , we used IFN-
γ
ICS o iden i y di ec ly an igen-speci ic
CD4 T cells a e s imula ion wi h hese pep ides. Fo his, splenocy es om mice ha had been
accina ed wi h MVA–NiV-G o MVA–NiVsG we e s imula ed wi h pep ides #49 and #50 and analyzed
by low cy ome y. A small popula ion o pep ide-speci ic IFN-
γ
+CD4 T cells was obse ed in he
MVA–NiVsG and MVA–NiV-G g oups (Figu e 6B). Due o low equencies o IFN-
γ
-p oducing cells,
we chose a cu o alue o 0.1% o di e en ia e be ween posi i e signals and backg ound. O e all, CD4
T cells om he MVA–NiVsG g oup had a equency o IFN-
γ
+abo e he cu o ela i e o MVA–NiV-G
g oup (Figu e 6C). The mean pe cen age o IFN-
γ
+CD4 T cells o he wo pep ides was 0.09–0.17%
and 0.04–0.07% o MVA–NiVsG and MVA–NiV-G, espec i ely. Mo eo e , he equency and absolu e
numbe o IFN-
γ
-p oducing CD4 T cells in pep ide #50 s imula ed cul u es was signi ican ly highe
in he MVA–NiVsG g oup when compa ed wi h he MVA–NiV-G g oup (mean =290
±
65 and
140 ±46 cells/106
splenocy es espec i ely). Fo pep ide #49, MVA–NiVsG accina ed mice showed
a signi ican ly ele a ed equency o IFN-
γ
+CD4 T cells only. In conclusion, ou da a indica e ha
pep ide #50 (NVWTPPNPNTVYHCS) is a p omising H2-IAb- es ic ed CD4 T cell epi ope candida e
o NiV-G. The alignmen o he pep ide o he ull amino acid sequence o wild- ype NiV-G is shown in
Figu e S3.
4. Discussion
The con inuous h ea o suddenly eme ging NiV ou b eaks, pa icula ly in Bangladesh and India,
demons a e he need o coun e measu e app oaches eady o use in an immedia e public heal h
esponse. A p esen , he e a e no licensed NiV accines o use in humans a ailable. The exis ence o
a NiV candida e accine should signi ican ly educe he isk o in ec ion and ansmission o he i us
in he case o an ou b eak scena io. The e a e some expe imen al NiV accines ha ha e al eady been
es ed in di e en p eclinical animal models. The majo ocus o hese app oaches was o e alua e
he immunogenici y and e icacy in he con ex o NiV challenge in ec ion. In hose s udies, e icacy
has been mos ly associa ed wi h he gene a ion o NiV-speci ic an ibodies, and immune moni o ing is
mainly elying on he de ec ion o i us-neu alizing an ibodies [
31
,
60
,
61
]. Howe e , he e is ela i ely
li le known abou he induc ion and he ele ance o NiV-speci ic cellula immune esponses. In ha
con ex , he a ailabili y o app op ia e ools o in es iga e he ole o T cells in NiV-speci ic immuni y
is an impo an p e equisi e in he de elopmen o new accines and he apeu ics. Thus, i will be
Vi uses 2020,12, 26 18 o 24
indispensable o moni o in animal models he con ibu ion o i us-speci ic T cells o p o ec i e
immuni y bu also o po en ial NiV an igen-speci ic immune pa hology.
He e, we iden i ied a majo his ocompa ibili y complex (MHC) haplo ype H2-b- es ic ed pep ide
epi ope in he NiV-G p o ein by s imula ing T cells om MVA
−
NiVsG accina ed IFNAR
−
/
−
mice
wi h a wo-dimensional (2D) ma ix pool o o e lapping pep ides. IFNAR
−
/
−
mice ha e been al eady
es ablished as a aluable p eclinical animal model o NiV in ec ion wi h a LD
50
o 8
×
10
3
p u a e
in ape i oneal challenge in ec ion [
15
]. Mo eo e , in p e ious s udies, we ha e al eady success ully
demons a ed ha in e e on ype I ecep o knockou mice (IFNAR
−
/
−
) [
47
] can be eadily used as
animal models o s udy he immunogenici y and p o ec i e capaci y o MVA immuniza ion [
62
,
63
].
He e, we wished o speci ically assess he abili y o MVA-deli e ed NiV-G an igen o induce he
ac i a ion o cellula immune esponses in mice. In gene al, he en elope G p o ein is known as he
well-conse ed a achmen glycop o ein o bo h HeV and NiV. In a p e ious s udy, a ecombinan
adeno-associa ed i us accine exp essing a ull-leng h NiV-G p o ein p o ec ed hams e s in an NiV
in ec ion model [
38
]. In ano he app oach, a soluble e sion o HeV-G has been enginee ed and showed
an e en mo e ad an ageous e icacy when es ed in di e en p eclinical animal models [
42
,
43
,
64
].
Using HeVsG, a monoclonal an ibody m102.4 was de i ed and has al eady been success ully es ed as
a he apeu ic app oach in humans. To u he enhance Henipa i us G p o ein-induced immunogenici y,
we also designed and es ed a soluble e sion o he NiV-G p o ein (NiVsG) simila o he HeVsG
an igen used o he gene a ion o m102.4. To compa a i ely e alua e he immunogenici y o he NiVsG
p o ein, we also gene a ed an MVA exp essing ull-leng h G. The ecombinan i uses MVA–NiV-G
and MVA–NiVsG p oduced s able amoun s o NiV-G an igen upon
in i o
in ec ion o human cells,
indica ing he unimpai ed exp ession o he a ge gene unde ansc ip ional con ol o he syn he ic
accinia i us-speci ic ea ly–la e p omo e PmH5 o he s ong na u al ea ly p omo e P g . In he
case o MVA–NiVsG, emo al o he ansmemb ane domain and cy oplasmic ail esul ed in he
sec e ion o he NiV-G om MVA-in ec ed cells and accumula ion also in he supe na an o cell
cul u es, as demons a ed in Wes e n blo analysis and immunos aining. A simila esul was ob ained
wi h HeVsG, as exp essed by con en ional ecombinan VACV [
41
]. In con as , he ull-leng h
MVA-p oduced NiV-G p o ein was no eleased in he supe na an , indica ing he s able p esen a ion
on he cell su ace h ough he ansmemb ane domains. Ano he impo an aspec o p ope p o ein
exp ession, olding and con o ma ional s abili y is in luenced by he N-glycans. Recen s udies indica ed
ha NiV-G N-glycans educe usion e iciency because emo al o some N-glycans caused cell–cell
hype usogenici y and inc eased i al en y [
65
]. Glycosidase ea men o ull-leng h MVA-p oduced
NiV-G esul ed in a polypep ide o 58 kDa, co esponding o he molecula mass p edic ed om he
NiV G gene encoding sequences. The glycosidase ea men o he NiVsG also indica ed he p esence
o all he N-glycans si es wi hin he soluble e sion o he glycop o ein. A i s
in i o
e alua ion in
mice e ealed ha ea men wi h he MVA–NiV-G and MVA–NiVsG candida e accines esul ed in
he induc ion o simila le els o G-binding se um an ibodies, con i ming he immunogenici y o bo h
an igen e sions [
66
]. In ha con ex , he p esence o binding an ibodies seems o play a subs an ial
ole in he blocking o NiV en y, since he mechanism o NiV neu aliza ion is complex and in ol es
mo e an igenic si es han hose equi ed o simple ecep o binding [
67
]. Howe e , mo e ecen s udies
in di e en animal models sugges ha cellula immune esponses a e also in ol ed in media ing
p o ec ion agains NiV in ec ion [
38
,
68
]. This obse a ion is u he suppo ed by s udies in a pig
model o NiV in ec ion showing subs an ial ac i a ion o CD8 T cells a e o al in ec ion wi h NiV [
45
].
In line wi h hese p eclinical da a, humans su i ing NiV in ec ion [
2
] showed signi ican le els o
p oli e a ing (Ki-67+) CD8 T cells, indica ing he p esence o acu e e ec o cells. These da a emphasize
ha in addi ion o he humo al immune esponses, T cells could be associa ed wi h eco e y om NiV
in ec ion. In a mo e ecen s udy, S oh and cowo ke s con i med he ac i a ion o NiV-speci ic CD8 T
cells in mice a e accina ion wi h NiV-like pa icles. These da a u he highligh ha T cells may play
a c i ical ole in NiV in ec ion [
68
]. Ano he hypo hesis is ha NiV-speci ic T cells could be in ol ed in
po en ial immunopa hologies. In his con ex , da a om in ec ions wi h o he neu o opic i uses,
Vi uses 2020,12, 26 19 o 24
o example, Wes Nile i us, demons a ed ha an igen-speci ic T cells can open he blood b ain
ba ie and con ibu e o i us in ec ions o he b ain [
69
–
73
]. Thus, o allow o mo e de ailed s udies
cha ac e izing T cells in NiV-associa ed immuni y o pa hogenesis, i is essen ial o iden i y NiV-G
pep ide epi opes allowing o he speci ic MHC- es ic ed an igen p esen a ion and he ac i a ion o
NiV-speci ic T cells. We iden i ied a noname epi ope NiV-G-9.3
75–83
(RSTDNQAVI). Analysis o his
pep ide sequence showed ha NiV-G 9.3
75–83
could be unc ionally conse ed in Hend a i us, bu no
Ceda i us (ano he ecognized Henipa i us), G an igens (Figu e S3). S uc u al and unc ional analyses
e eal p omiscuous and species-speci ic use o eph in ecep o s by Ceda i us [
74
]. This po en ial
epi ope will suppo a mo e de ailed expe imen al cha ac e iza ion o T cells induced by NiV in ec ion
in he mouse model and hei con ibu ion o pa hogenesis and p o ec ion. In his s udy, we ound
ha MVA–NiVsG accina ion induced signi ican ly highe amoun s o NiV-G epi ope-speci ic CD8 T
cells compa ed wi h he MVA–NiV-G candida e accine. This was a somewha su p ising obse a ion
as he immuniza ions wi h bo h an igens had elici ed e y compa able le els o G-speci ic an ibodies.
I is emp ing o specula e ha NiVsG, as a soluble an igen, can igge enhanced T cell esponses
because i is a ailable o wo di e en pa hways o an igen p esen a ion. On he one hand, NiVsG
as in acellula ly syn he ized an igen is endogenously p ocessed and p esen ed ia MHC-I on he
cell su ace o ac i a e CD8 T cells. In addi ion, he NiVsG is sec e ed in high amoun s om he
MVA–NiVsG-in ec ed cells, and such ex acellula an igen can e icien ly uel he c oss-p esen a ion
pa hway and he eby induce ele a ed CD8 and CD4 T cell immune esponses [
75
,
76
]. In e es ingly, he
MVA–NiVsG candida e accine also p o ed o apidly induce NiV-G epi ope-speci ic CD8 T cells a e
single-dose applica ion. These da a a e o ele ance, since he epidemiology o he mo e ecen NiV
ou b eaks demons a ed ha a po en ial accine candida e should apidly p o ec . Impo an ly, an
H2b- es ic ed epi ope has been iden i ied in IFNAR
−
/
−
mice, which se e as an es ablished small
animal model o NiV in ec ion [
15
]. In addi ion, we showed he induc ion o NiV-G-speci ic CD4
T cells upon p ime-boos immuniza ion in he IFNAR
−
/
−
wi h he MVA–NiV accines and using
pep ides o
in i o
s imula ion, as iden i ied by using MHC II binding p edic ions ob ained om he
IEDB online esou ce (www.iedb.o g). This da a goes well along wi h he hypo hesis ha CD4 T cell
esponses a e also signi ican ly ele a ed upon in ec ion [
77
]. Again, MVA–NiVsG accina ion esul s
in mo e e icien ac i a ion o CD4 T cell esponses. Fu he expe imen s will be needed o cha ac e ize
he con ibu ion o NiV G-speci ic CD4 T cells o NiV in ec ion in mo e de ail. Taken oge he , ou
indings showed he ac i a ion o NiV-G-speci ic T cells in IFNAR
−
/
−
mice ollowing accina ion
wi h MVA-based candida e accines. We con i med he iden i ica ion o po en ial H2-b- es ic ed
NiV-G CD8 and CD4 T cell pep ide epi opes. In his s udy we also demons a ed ha an MVA–NiVsG
candida e accine may ha e supe io immunogenici y, esul ing in NiV-speci ic an ibodies and T cells
in IFNAR
−
/
−
mice. These da a emphasize he p omise o u u e s udies in his animal model u he
e alua ing he ole o NiV-speci ic T cells ac i a ed by he G-9.3
75–83
and G-50
269–283
pep ide epi opes,
in bo h accine-induced p o ec ion and po en ial con ibu ion o NiV-induced pa hologies.
Supplemen a y Ma e ials:
The ollowing a e a ailable online a h p://www.mdpi.com/1999-4915/12/1/26/s1,
Figu e S1: Gene a ion and cha ac e iza ion o ecombinan MVA–NiVsG and MVA–NiV-G, Figu e S2: IFN-
γ
p oduc ion by CD8 and CD4 T cells s imula ed by he NiV-G pep ide 9.3, Figu e S3: Amino acid alignmen o
H2-b- and H2-IAb- es ic ed pep ides, Figu e S4: Quali y o ac i a ed CD8 T cells om mice immunized wi h
ecombinan MVA exp essing NiV-G.
Au ho Con ibu ions:
G.K., S.V., C.C.B., G.S. and A.V. concei ed and designed he expe imen s; G.K., S.V., S.J.
and A.V. pe o med he expe imen s; G.K., S.V., U.K., C.C.B., G.S. and A.V. analyzed he da a; G.K., G.S. and A.V.
w o e he pape . All au ho s ha e ead and ag eed o he published e sion o he manusc ip .
Funding:
This wo k was suppo ed by he Fede al Minis y o Educa ion and Resea ch (BMBF), g an numbe
DZIF TTU 01.805.
Acknowledgmen s:
U sula Klos e meie , Pa izia Bone , Johannes Dö ing and Axel G oß p o ided aluable
help wi h he animal s udies.
Vi uses 2020,12, 26 20 o 24
Con lic s o In e es :
The au ho s decla e no con lic o in e es . The unde s had no ole in he design o he
s udy; in he collec ion, analyses, o in e p e a ion o da a; in he w i ing o he manusc ip , o in he decision o
publish he esul s.
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