!
AUTOR: Daniel Cas ellano Cas illo
h p://o cid.o g/0000-0001-8041-8244!
EDITA: Publicaciones y Di ulgación Cien í ica. Uni e sidad de Málaga
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Cualquie pa e de es a ob a se puede ep oduci sin au o ización !
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Es a Tesis Doc o al es á deposi ada en el Reposi o io Ins i ucional de la Uni e sidad de Málaga
(RIUMA): iuma.uma.es
Facul ad de Ciencias
P og ama de Doc o ado:
Biología Celula y Molecula
Thesis by compendium o publica ions
EPIGENETICS OF ADIPOSE TISSUE AND
ITS RELATED DISORDERS
Daniel Cas ellano Cas illo
Di ec o es:
F ancisco Tinahones
Ma ía Isabel Queipo O uño
Isabel Mo eno Indias
D. F ancisco José Tinahones Madueño, Doc o en Medicina y Ci ugía, Di ec o de
la Unidad de Endoc inología y Nu ición del Hospi al Vi gen de la Vic o ia de
Málaga y P o eso Ti ula del Depa amen o de Medicina y De ma ología de la
Facul ad de Medicina de la Uni e sidad de Málaga
CERTIFICA: Que el abajo expues o en la memo ia de la Tesis Doc o al desa ollada
po Daniel Cas ellano Cas illo con el í ulo “EPIGENETICS OF ADIPOSE TISSUE
AND ITS RELATED DISORDERS” co esponde ielmen e a los esul ados
ob enidos.
La p esen e memo ia ha sido ealizada bajo mi di ección, conside ando que iene el
con enido y igo cien í ico necesa io pa a se some ida a juicio po el ibunal
nomb ado po la Uni e sidad de Málaga pa a op a al g ado de Doc o .
Y pa a que cons e, en cumplimien o de las disposiciones legalmen e igen es a los
e ec os opo unos, i mo el p esen e ce i icado, con lo que au o izo la lec u a de la
misma.
Di ec o de la esis:
D . F ancisco José Tinahones Madueño
Málaga, No iemb e de 2018
Dña. Ma ía Isabel Queipo O uño, Doc o a en Biología po la Uni e sidad de
Málaga
CERTIFICA: Que el abajo expues o en la memo ia de la Tesis Doc o al desa ollada
po Daniel Cas ellano Cas illo con el í ulo “EPIGENETICS OF ADIPOSE TISSUE
AND ITS RELATED DISORDERS” co esponde ielmen e a los esul ados
ob enidos.
La p esen e memo ia ha sido ealizada bajo mi di ección, conside ando que iene el
con enido y igo cien í ico necesa io pa a se some ida a juicio po el ibunal
nomb ado po la Uni e sidad de Málaga pa a op a al g ado de Doc o .
Y pa a que cons e, en cumplimien o de las disposiciones legalmen e igen es a los
e ec os opo unos, i mo el p esen e ce i icado, con lo que au o izo la lec u a de la
misma.
Di ec o a de la esis:
D a. Ma ía Isabel Queipo O uño
Málaga, No iemb e de 2018
Dña. Isabel Mo eno Indias, Doc o a po la Uni e sidad de las Palmas de G an
Cana ia
CERTIFICA: Que el abajo expues o en la memo ia de la Tesis Doc o al desa ollada
po Daniel Cas ellano Cas illo con el í ulo “EPIGENETICS OF ADIPOSE TISSUE
AND ITS RELATED DISORDERS” co esponde ielmen e a los esul ados
ob enidos.
La p esen e memo ia ha sido ealizada bajo mi di ección, conside ando que iene el
con enido y igo cien í ico necesa io pa a se some ida a juicio po el ibunal
nomb ado po la Uni e sidad de Málaga pa a op a al g ado de Doc o .
Y pa a que cons e, en cumplimien o de las disposiciones legalmen e igen es a los
e ec os opo unos, i mo el p esen e ce i icado, con lo que au o izo la lec u a de la
misma.
Di ec o a de la esis:
D a. Isabel Mo eno Indias
Málaga, No iemb e de 2018
Index
ABBREVIATIONS!19!
INTRODUCTION!33!
1. OBESITY 35!
2. ADIPOSE TISSUE 36!
2.1. Adipose Tissue cellula i y: Adipocy e p ecu so s and adipogenesis 38!
2.2. Adipose Tissue cellula i y: Immune cells 41!
3. ADIPOSE TISSUE METABOLISM: LIPID AND GLUCOSE METABOLISM 43
3.1. Lipid me abolism 43!
3.2. Glucose me abolism 47!
4. ROLE OF ADIPOSE TISSUE IN METABOLIC DISORDERS 48!
4.1. Me abolic ac o s ela ed o me abolic diso de s 50!
4.1.1. Lipop o ein Lipase (LPL) 50!
4.1.2. Low-densi y lipop o ein ecep o - ela ed p o ein 1 (LRP1) 53!
4.1.3. Glucose anspo e ype 4 (GLUT4) 53!
4.1.4. Pe oxisome p oli e a o -ac i a ed ecep o s (PPARs) 54!
4.1.5. S e ol egula o y elemen binding ac o s (SREBFs) 55!
4.1.6. S ea oyl-CoA-desa u ase (SCD) 56!
4.1.7. Li e X ecep o be a (LXRb) 56!
4.1.8. Lep in (LEP) 58!
4.2. In lamma o y ac o s in me abolic diso de s 60!
5. ADIPOSE TISSUE AND COLORECTAL CANCER 64!
6. EPIGENETICS 67!
6.1. DNA me hyla ion 67!
6.2. His one modi ica ions 71!
6.3. In e play be ween DNA me hyla ion and his one modi ica ions 73!
6.4. In e play be ween me abolic s a us and epigene ics 77!
Index
6.4.1. Role o li es yle and nu i ional condi ions in he epigene ics o obesi y and me abolic
disease 80!
6.4.2. Epigene ics al e a ions in colo ec al cance 83!
HYPOTHESIS!85!
OBJECTIVES!89!
RESULTS!93!
MANUSCRIPT 1. Adipose Tissue LPL Me hyla ion is Associa ed wi h T iglyce ide
Concen a ions in he Me abolic Synd ome 95!
MANUSCRIPT 2. Adipose Tissue DNA Me hyla ion o Adipogenic, Lipid Me abolism and
In lamma o y Genes in Me abolic Synd ome 107!
MANUSCRIPT 3. Complemen Fac o C3 Me hyla ion and mRNA Exp ession Is Associa ed
o BMI and Insulin Resis ance in Obesi y 121!
MANUSCRITP 4. Ch oma in Immunop ecipi a ion Imp o emen s o he P ocessing o Small
F ozen Pieces o Adipose Tissue 129!
MANUSCRIPT 5. Human Adipose Tissue H3K4me3 in Adipogenic, Lipid and In lamma o y
genes a e Posi i ely Associa ed o BMI and HOMA-IR 139!
MANUSCRIPT 6. Adipose Tissue In lamma ion and VDR Exp ession and Me hyla ion in
Colo ec al Cance 151!
GENERAL DISCUSSION!161!
CONCLUSIONS!171!
LITERATURE!175!
SUPPLEMENTAL DATA!207!
!
ABBREVIATIONS
Abb e ia ions
21
Body mass index: BMI
Tumo nec osis ac o : TNF/ TNFα
In e leukin 6: IL6
Insulin esis ance: IR
Ca dio ascula disease: CVD
Me abolic Synd ome: Me S
T iglyce ides: TG/Tg
High-densi y lipop o ein choles e ol: HDL-cho/HDL-C
Adipose issue: AT
Whi e adipose issue: WAT
B own adipose issue: BAT
Uncoupling p o ein: UCP
Subcu aneous adipose issue: SAT
Visce al adipose issue: VAT
Weigh /hip a ion: WHR
S omal ascula ac ion: SVF
Adipose issue-de i ed mesenchymal s em cells: ASCs
Sca enge ecep o class A membe 5: SCARA5
Bone mo phogene ic p o ein 2: BMP2
Bone mo phogene ic p o ein 4: BMP4
T ans o ming g ow h ac o be a: TGFβ
Pla ele -de i ed g ow h ac o ecep o A: PDGFRα
Pla ele -de i ed g ow h ac o ecep o B: PDGFRβ
Pla ele -de i ed g ow h ac o subuni A: PDGFA
SMAD amily membe 1: SMAD1
Abb e ia ions
22
SMAD amily membe 4: SMAD4
SMAD amily membe 5: SMAD5
SMAD amily membe 8: SMAD8
Zinc inge p o ein 423: Z p423
Lysyl oxidase: Lox
Fib oblas g ow h ac o 2: FGF2
Pe oxisome p oli e a o ac i a ed ecep o gamma: PPARγ
Pe oxisome p oli e a o ac i a ed ecep o gamma 2: PPARγ2
Pe oxisome p oli e a o ac i a ed ecep o alpha: PPAR
CCAAT enhance binding p o ein be a: C/EBPβ
CCAAT enhance binding p o ein del a: C/EBPδ
CCAAT enhance binding p o ein alpha: C/EBPα
K üppel-like ac o 5: KLF5
K üppel-like ac o 15: KLF15
K üppel-like ac o 2: KLF2
S e ol egula o y elemen binding ansc ip ion ac o 1: SREBP1
S e ol egula o y elemen binding ansc ip ion ac o 1 iso o m c: SREBP1c
S e ol egula o y elemen binding ansc ip ion ac o 1 iso o m a: SREBP1a
S e ol egula o y elemen binding ansc ip ion ac o 2: SREBP2
Lipopolysaccha ides: LPS
In e e on-γ: IFN-γ
In e leukin 12: IL12
In e leukin 4: IL4
In e leukin 14: IL14
In e leukin 10: IL10
Abb e ia ions
23
Chi inase-like 3: Ym1
A ginase 1: ARG1
Chylomic ons: CM
Apolipop o ein B48: ApoB48
Apolipop o ein CII: ApoCII
Apolipop o ein CIII: ApoCIII
Lipop o ein lipase: LPL
Apolipop o ein E: ApoE
Low-densi y lipop o ein choles e ol: LDL-cho/LDL-C
Low densi y lipop o ein ecep o : LDLR
Low-densi y lipop o ein (LDL)- ela ed p o ein 1: LRP1
Ve y low-densi y lipop o ein: VLDL
In e media e densi y lipop o eins: IDL
Hepa ic lipop o ein lipase: HLPL
Insulin ecep o : INSR
Lep in: LEP
Lep in ecep o Ob-Rb: Ob-Rb
F ee a y acids: FFA
Clus e o di e en ia ion 36: CD36
Fa y acid binding p o ein 4: FABP4
Acyl-CoA syn hase: ACS
Glyce ol-3 phospha e: glyce ol-3P
Ace yl-CoA ca boxylase: ACC
Fa y acid syn hase: FAS
Adipose TG lipase: ATGL
Abb e ia ions
24
Ho mone sensi i e lipase: HSL
Pe ilipin 1: PLIN1
Ca eolin 1: CAV-1
Janus kinase: JAK
Signal ansduce and ac i a o o ansc ip ion: STAT
Low-molecula -weigh lep in ime : LMW
Medium-molecula -weigh lep in hexame : MMW
High-molecula -weigh lep in complex: HMW
Phosphoenolpy u a e ca boxykinase: PEPCK
Glucose-6-phospha ase: G6P
AMP-ac i a ed p o ein kinase: AMPK
Be a cell: β-cell
Wais ci cum e ence: WC
Blood p essu e: BP
Sys olic blood p essu e: SBP
Dias olic blood p essu e: DBP
Non-alcoholic s ea ohepa i is: NASH
Neu ological diso de s: ND
Endoplasmic e iculum: ER
Lipase ma u a ion ac o 1: LMF1
Sel-1 supp esso o lin-12-like: Sel1L
Hepa an sul a e p o eoglycans: HSPG
Glycosylphospha idylinosi ol (GPI)-ancho ed glycop o ein 1: GPIHBP1
Apolipop o ein A5: ApoA5
Angiopoie in-like p o ein 3: Angp l3
Abb e ia ions
31
Glycop o ein ( ansmemb ane) nmb: Gpnmb
Ch oma in inmunop ecipi a ion: ChIP
Homeos a ic model assessmen o insulin esis ance: HOMA-IR
Pos p andial iglyce ides: Pos TG
Glu ama e-Oxaloace a e T ansaminase: GOT
Glu ama e-Py u a e T ansaminase: GPT
Gamma Glu amyl T anspep idase: GGT
C-Reac i e P o ein: CRP
P o einase K: PK
E2F ansc ip ion ac o 1: E2F1
T ansc ip ion S a Si e: TSS
Lean NG: Lean no moglycemic
MO NG: Mo bid obese no moglycemic
MO PD: Mo bid obese p ediabe ic
Pa a hy oid ho mone: PT
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!INTRODUCTION
In odu ion
35
1. OBESITY
Nowadays, obesi y has become one o he g ea es causes o heal h diso de s in
de eloped coun ies. Mo e han a hi d o he wo ld popula ion su e s o o e weigh o
obesi y, being expec ed o ise up o 38% o o e weigh and 20% o obesi y by 2030,
eaching he 85% o o e weigh /obese people in he USA (1).
Obesi y is de ined as an excess o body weigh , which unde lines wi h an accumula ion
o adiposi y (adipose issue). Obesi y is usually in e p e ed by he Body mass index
(BMI), measu ed as a a io weigh /heigh 2 (2). Though, subjec s a e mos ly classi ied
acco ding o his index as lean o no mal-weigh subjec s (when BMI<25), o e weigh
subjec s (when BMI≥25 and <30), obese subjec s (BMI≥30 and <40) and mo bid obese
subjec s (BMI≥40) (3,4).
The excess o adiposi y is usually accompanied by a se ies o me abolic dis u bances
and a highe isk o su e ing ce ain diseases (1). Obesi y inc eases he isk o being
diabe ic be ween 4.9% and 9%, and in e sely 60% o 90% o all diabe ics a e o ha e
been obese (5). In ac , al hough ba ia ic su ge y has as i s consequence he weigh
loss, is also one o he mos e ec i e ea men o imp o e diabe es and me abolic
disease, demons a ing he close ela ionship be ween BMI and diabe es (6). Al hough
he connec ion be ween bo h, obesi y and diabe es, is no o ally clea , mechanisms in
which a e in ol ed p o-in lamma o y cy okines ( umo nec osis ac o (TNF),
in e leukin 6 (IL6)), insulin esis ance (IR), de anged a y acid me abolism and cellula
p ocesses such as e iculum s ess and mi ochond ial dys unc ion ha e been shown o
be in ol ed (7).
Obesi y has also been widely associa ed o ca dio ascula disease (CVD) (8). I has
been shown ha an inc ease in a uni o BMI is associa ed o a 4% inc ease in he isk
o ischemic s oke and 6% inc ease in hemo hagic s oke (9). Inc ease in BMI was also
In odu ion
36
associa ed o an inc ease in blood p essu e, which was aduced o a 12% inc ease in
co ona y hea disease and 24% inc ease isk o s oke (9). O he s udy showed an
inc ease in subclinical ca dio ascula disease associa ed o a ise in BMI compa ed o
lean subjec s (10). Obesi y was posi i ely associa ed wi h a 1.17-1.28 ela i e isk
inc ease in co ona y a e y calcium, 1.45 ela i e isk inc ease o common ca o id
a e y in imal medial hickness, 1.32 ela i e isk inc ease o in e nal ca o id a e y
in imal medial hickness and 2.69 ela i e isk inc ease in le en icula mass (10).
A he oscle osis has also been associa ed o obesi y in a p ocess in which adipose issue,
low-g ade in lamma ion, oxida i e s ess, impai ed au ophagy and gu mic obio a
among o he ac o s could be ela ed (11,12).
I is clea ha cance is one o he g ea es heal h conce ns in mode n socie ies. Obesi y
has been s ongly associa ed o se e al cance s, and wha is mo e, has been p oposed as
he second bigges cause o cance in he wo ld only su passed by smoking (13). Thus,
he es ima ion is ha o e 20% o all cance s a e caused o excess body weigh , ising
o 50% in pos menopausal women (14). Mo eo e , obesi y also a ec s dea h a es in
cance , up o 20% o dea h in women and 14% o dea h in men ha can be a ibu able
o obesi y (14).
Finally, obesi y has adi ionally been associa ed o wha is known as me abolic
synd ome (Me S). Me S is de ined by a clus e o me abolic al e a ions which al oge he
inc ease he isk o su e ing diabe es, ca dio ascula disease and cance (15,16).
2. ADIPOSE TISSUE
The e a e di e en adipose issue (AT) depo s wi h di e en me abolic oles (17).
Whi e AT (WAT) is composed by unilocula cells wi h a high capaci y o lipid s o age
in he o m o iglyce ides (TG), since is he issue in cha ge o accumula ing he
In odu ion
37
su plus o ene gy in he o ganism. On he o he hand, B own AT (BAT) is made ou o
mul ilocula adipocy es wi h a high mi ochond ial con en ha can consume high le els
o ene gy when a e s imula ed by ad ene gic signals o cold; he ene gy is used in hea
p oduc ion, a p ocess ha is ca ied ou by he mi ochond ial uncoupling p o ein (UCP)
(17).
The e a e wo ypes o WAT, which a e mainly de ined by hei depo loca ion: he
subcu aneous AT (SAT) and he isce al AT (VAT) (18) (Figu e 1).
Figu e 1. Pa e ns o a dis ibu ion and i s ela ionship wi h BMI, weigh /hip
ci cum e ence and isk o su e ing disease. Pea shape (2) is associa ed o SAT and is
usually e e s as woman a dis ibu ion. Apple shape (3) is associa ed o VAT and is mos
common o men a dis ibu ion. Risk o associa ed ch onic disease such as ca dio ascula
disease o diabe es is display by he ed line in ensi y om he lowes isk o lean subjec s (1)
o he g ea es isk cha ac e is ic o apple a dis ibu ion (3). Abb e ia ions: Subcu aneous
In odu ion
38
adipose issue (SAT); isce al adipose issue (VAT); Body mass index (BMI); weigh /hip a io
(WHR). Adap ed om (19).
Bo h SAT and VAT no only di e by hei loca ion, bu also by hei molecula p o ile,
hei me abolism and hei implica ion in he e iology o he me abolic disease (18,20–
22). Also he emb yonic o igin o bo h a depo s seems o be di e en . While VAT
adipocy es a e hough o ha e a mesode mal o igin, SAT adipocy es come om
di e en emb yonic o igins depending on he exac depo s (mesode m, neu oec ode m),
and in some cases s ill unde e mined wha hei o igin a e (17). Besides, while
expansion o SAT has been long conside ed as a p o ec i e ac o agains me abolic
diso de s, a accumula ion in VAT (cha ac e is ic o cen al obesi y o high wai /hip
a io) has been deemed o p omp me abolic diso de s (19,23). Howe e , he e is an
ongoing discussion abou which issue is i s damaged and which a e hei oles in he
gene a ion o hese diseases (20–22,24). Wha is undoub edly is ha AT has eme ged as
an impo an media o o he whole body homeos asis, and i s ole as an endoc ine
o gan has ocused g ea in e es s.
2.1. Adipose Tissue cellula i y: Adipocy e p ecu so s and adipogenesis
AT is composed by a my iad o cell ypes in which adipocy es, he p edominan cell,
a e in cha ge o lipid accumula ion. Mo eo e , in i s s omal ascula ac ion (SVF)
he e a e mac ophages (which modula e adipose issue unc ion), lymphocy es, ascula
cells, pe icy es, adipose issue-de i ed mesenchymal s em cells (ASCs) (wi h au o-
enew p ope ies and can di e en ia e o p e-adipocy es) all o hem known as s omal
ascula cells (SVC). The adipocy e cell u no e is ca ied ou o ASCs, al hough he
con ibu ion o pe icy es, endo helial cells and non- esiden p ogeni o s wi h
In odu ion
39
hema opoie ic o igin has been p oposed o con ibu e a di e en deg ee depending on
he speci ic a depo and he me abolic condi ion o he subjec (17). Thus, a p ope
balance among all hese ype o cells is needed o a co ec unc ion o AT.
Adipogenesis, he mechanism in which new adipose issue is gene a ed, assu es he AT
u no e and hype plasia (AT expansion by cell numbe inc ease). ASCs ha e been
shown o be able o di e en ia e o a wide ange o cell ypes, including adipocy es,
chond ocy es, os eocy es and miocy es. Al hough p e-adipocy es di e en ia ion o
adipocy es is a well-known p ocess much less is known abou ASCs commi men o
p e-adipocy es. Basically, he di e en ia ion om ASC o ull di e en ia ed adipocy e
equi es o ou s ages: 1) Commi men o ASCs o p e-adipocy es; 2) clonal expansion
o p e-adipocy es; 3) g ow h a es ; 4) e minal di e en ia ion o adipocy es (25). The
commi men o ASC o p e-adipocy e lineage implies se e al ac o s as Sca enge
ecep o class A membe 5 (SCARA5), Bone mo phogene ic p o ein 2 (BMP2), Bone
mo phogene ic p o ein 4 (BMP4), T ans o ming g ow h ac o be a (TGFβ) signaling,
Pla ele -de i ed g ow h ac o ecep o A (PDGFRα), Pla ele -de i ed g ow h ac o
ecep o B (PDGFRβ), Pla ele -de i ed g ow h ac o subuni A (PDGFA), SMAD
amily membe 1 (SMAD1), SMAD amily membe 4 (SMAD4), SMAD amily
membe 5 (SMAD5), SMAD amily membe 8 (SMAD8), Zinc inge p o ein 423
(Z p423), Lysyl oxidase (Lox) o Fib oblas g ow h ac o 2 (FGF2) among o he s (25–
27). TGFβ signaling inhibi s p e-adipocy e commi men , BMP ( om he TGFβ p o ein
amily) exe s gene ally a posi i e e ec o e ASC o p e-adipocy e commi men , and
he PDGF has been p oposed o ha e bo h, adipogenic and an i-adipogenic e ec s.
BMP2 and BMP4 ha e been demons a ed o s imula e he he e odime Smad1/Smad4
(p ocess ha Z p423 is hough o egula e) and he exp ession o Pe oxisome
p oli e a o ac i a ed ecep o gamma 2 (PPARγ2) and Lox ha a e necessa y o p e-
In odu ion
40
adipocy e commi men . Ano he p o-adipogenic e ec di e en om he BMP
signaling is he p o-adipogenic e ec ha FGFs p o okes o e ASCs. Thus, FGF2 has
been shown o s imula e PPARγ2 o e exp ession and exogenous addi ion o FGF2 in
SCV s imula es WAT o ma ion (26,27).
Much mo e is known abou p e-adipocy e di e en ia ion o ma u e adipocy e. The
adipogenesis pa hway is con olled by se e al ansc ip ion ac o s, wi h PPARG as
cen al ac o in his p ocess. Besides, se e al CCAAT enhance binding p o ein
(C/EBP) ac o s a e in ol ed a di e en s ages o adipogenesis. Fi s , an
o e exp ession o C/EBPβ and C/EBPδ akes place, s imula ing he exp ession o
C/EBPα and PPARγ. In u n, bo h PPARγ and C/EBPα can s imula e each o he in a
egula o y loop. E en ually, PPARγ and C/EBPα ac i a e he exp ession o genes
ela ed o adipocy e me abolism, p oducing inal adipocy e ma u a ion (Figu e 2). O he
ac o s ha e been also shown o be impo an in adipocy e di e en ia ion. Fo ins ance,
se e al genes om he K üppel-like ac o s (KLFs) amily a e in ol ed in he
adipogenic pa hway. KLF5 and KLF15 ha e been obse ed o s imula e PPARγ
exp ession in ea ly and e minal di e en ia ion s ages, espec i ely. Con a y, KFL2 has
been shown o ha e an an i-adipogenic e ec by inhibi ing PPARγ exp ession (28,29).
O he ac o ha has been p oposed o play a ole in adipocy e di e en ia ion is he
S e ol egula o y elemen binding ansc ip ion ac o 1 (SREBP1), especially he S e ol
egula o y elemen binding ansc ip ion ac o 1 iso o m c (SREBP1c), which is able o
ac i a e adipogenesis ia PPARγ s imula ion, al hough mice wi h o e esp ession o
nuclea SREBP1c has been shown o su e o lipodys ophy (28).
In odu ion
47
3.2. Glucose me abolism
AT no only plays a ole in lipid me abolism bu he closed in e play be ween bo h, lipid
and glucose egula ion, gi es AT an impo an weigh in glucose homeos asis. This is
e iden since AT-speci ic KO-mouse o GLUT4 has been shown o p o oke a ailu e in
sys emic glucose homeos asis leading o insulin esis ance. I has been shown ha
GLUT4 is down- egula ed du ing as ing s a e and up- egula ed du ing pos p andial
s a e. In AT, glucose and speci ically he in e media y me aboli e in glycolysis glyce ol-
3P, is necessa y o he e-es e i ica ion o FFA o TG. When glucose is limi ed (as in
as ing s a es) adipocy es ely on glyce oneogenesis in o de o ob ain he necessa y
sou ce o glyce ol-3P (48).
Mo eo e , some adipokines sec e ed by AT can exe a egula o y e ec o e glucose
homeos asis (48). Thus, LEP has been shown o di ec ly inhibi insulin gene (ISN)
exp ession in β-cells ia he ac i a ion o JAK/STAT signaling. LEP has also been
demons a ed o inhibi insulin sec e ion and o egula e β-cell mass in panc eas (49)
(Figu e 5).
Figu e 5. Schema ic ep esen a ion o he di ec e ec s exe ed by LEP o e glucose
me abolism. LEP inhibi s insulin by down- egula ion o p o-insulin exp ession, inhibi ion o
insulin sec e ion in β-cell and by con olling β-cell mass.
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Adiponec in is ano he molecule sec e ed by AT, wi h an ac i e ole in glucose
homeos asis. This molecule is sec e ed in h ee iso o ms: low-molecula -weigh (LMW)
ime s, medium-molecula -weigh (MMW) hexame s and high-molecula -weigh
(HMW) complexes. Ou o he h ee iso o ms, he HMW has been desc ibed as he mos
ac i e o m. Adiponec in enhances hepa ic insulin sensi i i y and a oid
gluconeogenesis by down- egula ing bo h phosphoenolpy u a e ca boxykinase (PEPCK)
and glucose-6-phospha ase (G6P). The inc eased hepa ic sensi i i y o adiponec in is
hough o occu ia ei he ecep o -media ed ac i a ion o AMPK pa hway o lowe ing
hepa ic ce amide le els (50,51). Apa om he e ec on pe iphe al issues, adiponec in
a ec s β-cells. Thus, adiponec in can p e en β-cells om apop osis, has a p o ec i e
ole agains lipid cy o oxici y and i is hough o s imula e insulin sec e ion du ing
challenged s a es (50).
4. ROLE OF ADIPOSE TISSUE IN METABOLIC DISORDERS
Since obesi y is cha ac e ized by an inc ease o AT mass, he p emise ha adipose
issue may pa icipa e in he e iology and gene a ion o me abolic diso de s usually
associa ed o obesi y came ou long ime ago.
I is known ha AT can deli e a wide ange o molecules, as cy okines, p os aglandins,
adipokines o ee a y acids, which can exe hei ac i i y in o he issues, which in
cases can lead o disease (52–55). The e o e, AT has gained a cen al ole in explaining
me abolic dis u bances and has been ela ed o he appea ance and de elopmen o
diseases like dyslipidemia, hype ension, p oin lamma o y s a es, insulin esis ance,
Me S, diabe es, CVD, s oke, o cance (37,56–59).
Al hough AT abno mali ies has been usually associa ed o obesi y, me abolic
dis u bances also accoun in no mal-weigh subjec s (37), which ag ees wi h he new
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49
ha moniza ion c i e ia o de ine Me S, in which cen al obesi y is no longe a manda o y
ac o (15).
Me S is de ined by a clus e o me abolic al e a ions, which al oge he inc eases he isk
o su e ing diabe es, ca dio ascula disease and cance (15,16) (Figu e 6). Gene ic and
li es yle ac o s ha e been shown o be impo an o he de elopmen and e iology o
Me S (60). Me S ep esen s a se ious p oblem in de eloped coun ies, wi h a high
p e alence (30-40% by he age o 65 yea s) and bo h, i s p e alence and incidence a e
inc easing (61). The appea ance o Me S has been mainly associa ed wi h li es yle
ea u es like physical inac i i y, smoking, alcohol in ake and die . Howe e , gene ic and
epigene ic ac o s a e now eme ging as ac o s o pa amoun impo ance in i s
pa hophysiology (62,63).
Figu e 6. Me abolic synd ome a iables and Me S associa ed diso de s. Me S is composed
by a leas he al e a ion in 3 o he ollowing pa ame e s: HDL, TG, glucose, blood p essu e
and WC. Some o he pa ame e s a e sex dependen (as HDL o WC) and aze dependen (as
WC, he showed alues a e o wes coun ies). The Me S pa ame e s a e ep esen ed acco ding
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50
o he es ablished in (15). Abb e ia ions: Me abolic synd ome (Me S); wais ci cum e ence
(WC); blood p essu e (BP); sys olic blood p essu e (SBP); dias olic blood p essu e (DBP);
high-densi y lipop o ein (HDL); iglyce ides (TG); Ca dio ascula diseases (CVD); Non-
alcoholic s ea ohepa i is (NASH); Neu ological diso de s (ND).
4.1. Me abolic ac o s ela ed o me abolic diso de s
4.1.1. Lipop o ein Lipase (LPL)
LPL plays a key ole in lipid me abolism (64) by hyd olyzing iglyce ide- ich
lipop o ein (CM o VLDL) o ee a y acids, ha can be hen inco po a ed in o he AT
o s o age o ene gy u iliza ion in o he issues (64,65) (Figu e 7). LPL is syn he ized
and sec e ed o he endoplasmic e iculum (ER) whe e is olded wi h he help o Lipase
ma u a ion ac o 1 (LMF1). LPL/LMF1 o m a complex wi h Sel-1 supp esso o lin-
12-like (Sel1L) and his LPL/LMF1/Sel1L complex helps o s abilize LPL homo-dime s,
he ac i e o m o LPL, and allows LPL exi s he ER (65).
A e being sec e ed, LPL is bound o Hepa an sul a e p o eoglycans (HSPG) a he
su ace o he cell. HSPG no only se es as an ancho age molecule bu also con ibu e
o LPL ansloca ion o he endo helial su ace and ac s as co ac o o LPL ac i i y.
Ano he ac o , he GPIHBP1 (which is a Glycosylphospha idylinosi ol (GPI)-ancho ed
glycop o ein belonging o he lymphocy e an igen 6 amily) has been shown o play an
impo an ole in LPL anspo a ion om he in e s i ial space o he luminal space a
he endo helial su ace. Lack o his ac o has been obse ed o impai ed ansloca ion
o LPL o he endo helial su ace p o oking hype iglyce idemia. Besides, i has been
shown ha GPIHBP1 is able o ac o e LPL ac i i y by keeping he ca aly ic domain o
he enzyme un olded (65).
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Figu e 7. Schema ic o e iew o LPL sec e ion and ancho age o EC su aces. LPL o ms a
dime in he endoplasmic e iculum and is hen sec e ed. LPL is bound o HSPG in he su ace
o he adipocy e and hen ansloca ed o GPIHBP1. LPL hyd olyze TG om T iglyce ide- ich
lipop o eins as CM and VLDL p oducing FFA ha a e anspo ed o he adipocy e whe e a e
e-es e i ied gi ing TG o be s o ed in LD. Abb e ia ions: Endo helial cells (EC); hepa an
sul a e p o eoglycans (HSPG); iglyce ides (TG); chylomic ons (CM); e y-low densi y
lipop o eins (VLDL); ee a y acid (FFA); lipid d ople s (LD).
Gi en he impo ance o LPL in lipid homeos asis he enzyme unde goes a igh
egula ion a all le els. Thus, some ac o s ha e been pos ula ed o con ol LPL ac i i y
like ApoCI/II/III, ApoA5, angiopoie ins and ho mones. ApoCII, which is ca ied in CM,
has been shown o be a s imula o o LPL ac i i y, while ApoCI/III a e inhibi o y
ac o s. ApoA5 ha is p esen in VLDL, HDL and CM o a less ex end has been
desc ibed o s imula e LPL ac i i y, al hough he e ec seems o be weake han he
posi i e ac ion ca ies ou by ApoCII. Angiopoie in-like p o ein 3 (Angp l3) has been
desc ibed o inhibi LPL ac i i y as well as by enhancing i s clea age by p o-p o ein
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con e ases. Angp l4 is p oduced in he li e and AT and has been shown o inc ease
wi h as ing, causing an inhibi o y e ec o e LPL. I is hough ha inhibi s LPL
dime iza ion and educes LPL a ini y o GPIHBP1. Ano he membe o angiopoie ins,
Angp l8 has also been desc ibed o inhibi LPL ac i i y (65). I has been obse ed ha
insulin and glucose can egula e LPL. Thus, insulin leads o a aise o LPL mRNA
le els, while glucose can ac i a e LPL ac i i y by glycosyla ion in i s ca aly ic si e (66).
O he ho mones o de i a i e ho mones like P os aglandin E2 (PGE2), 7-β-
hyd oxycholes e ol and 25-hyd oxycholes e ol has been shown o exe an inhibi o y
e ec o e LPL p oduc ion in mac ophage cul u es. Mo eo e , LPL gene exp ession
has been shown o be egula ed by miRNAs such miR-27 and miR-29 in AT (65). De-
egula ion o any o hese ac o s can lead o de- egula ion o LPL exp ession o i s
ac i i y, which in u n migh p omo e lipid me abolic ailu e. By con as , he
unde s anding o he egula ion o LPL can also gi e clues o new ea men app oaches
based on he inhibi ion o s imula ion o hese ac o s. Fo ins ance, some molecules
such as s a ins, ib a es, nico inic acid, Eze imibe o O lis a ha e been used o ea
hype iglyce idemia by mean o hei s imula o y e ec o e ApoCII, while o he
ea men as ib a es ha e been desc ibed o inhibi ApoCIII, he e o e p o oking LPL
ac i i y enhancemen (65).
Indeed, AT is he main TG s o age issue. LPL mRNA inc eases du ing he adipocy e
di e en ia ion, being one o he ea lies ma ke s de ined in he p eadipocy e lineage
(67). On he o he hand, AT LPL mRNA exp ession has been nega i ely associa ed o
he BMI (58). As we s a ed be o e, LPL ac i i y in AT has been ela ed wi h
hype iglyce idemia (68). Thus, lowe ac i i y o LPL can esul in g ea e le els o
plasma TG, which in u n can be accumula ed in o he issues causing insulin- esis ance
(69).
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4.1.2. Low-densi y lipop o ein ecep o - ela ed p o ein 1 (LRP1)
LRP1 is a membe o he LDL ecep o amily ha egula es lipid and glucose
me abolism in he li e and AT (70). LRP1 is in ol ed in CM- emnan s, insulin
ecep o a icking and egula ion, and glucose me abolism, he e o e being ela ed o
a he oscle osis (i is an a he op o ec i e ac o ) and diabe es (71). LRP1 ansloca ion o
he cell su ace a e glucose and insulin s imula ion has been desc ibed in adipocy es.
Mo eo e , his LRP1 induc ion by insulin and glucose is accompanied by an inc ease in
he up ake o CM- emnan s by adipocy es (71). In ac , i has been demons a ed ha
LRP1 a e con ained a GLUT4 ich esicles and is deli e ed a e insulin s imula ion
al oge he . I has been shown ha adipocy e-speci ic LRP1-knockou mice p o okes a
dec ease o GLUT4, Insulin- egula ed aminopep idase (IRAP) and so ilin exp essions,
and ha his h ee ac o s oge he wi h LRP1 o m a complex ha is in ol ed in
GLUT4 a icking. Thus, LRP1-deple ed 3T3-L1 adipocy es p esen s up o 50%
dec ease in glucose up ake, demons a ing he impo ance o LRP1 in he e iology o
insulin esis ance (71). Adipose-speci ic LRP1-knockou in mice has also been ela ed
o AT dys unc ion (wi h he s imula ion o CD68, MCP1/CCL2, IL6 and TNF)
p omo ing a he oscle osis (72). VAT LRP1 mRNA has been desc ibed o be
o e exp essed bo h, in mice ed wi h high a die (HDF) compa ed o no mal die and
in obese people compa ed o no mal-weigh subjec s (73).
4.1.3. Glucose anspo e ype 4 (GLUT4)
GLUT4 in AT is he a e-con olling s ep in insulin-media ed glucose disposal, being i s
le els diminished in insulin esis ance s a e and obesi y. Glucose is necessa y as a
eliable sou ce o glyce ol-3P (a glycoly ic in e media y) ha is used o e-es e i ied
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F ee a y acid (FFA) aken om he blood s eam o o m TG (48). A down- egula ion
o GLUT4 could impai his sou ce o glyce ol-3P o wha glyce oneogenesis eme ges
as an impo an pa hway o TG o ma ion. In his pa hway, lac a e o py u a e en e s
he T ica boxylic acid cycle (TCA cycle) ha p oduces oxaloace a e, which is hen
ans o med o phosphoenolpy u a e by he cy osolic enzyme Phosphoenolpy u a e
ca boxykinase (PEPCK). Phosphoenolpy u a e is hen con e ed o glyce ol-3P by
e e se glycolysis. A huge in ake o FFA in subjec s wi h insulin- esis ance could
o e whelmed his pa hway, hinde ing FFA es e i ica ion and leading o FFA
accumula ion in pe iphe al issues con ibu ing o insulin esis ance wo sening.
Thiazolidinediones (TZDs) is a po en insulin sensi izing used o ea diabe es. This
enzyme can up- egula e glyce ol kinase and PEPCK ac i i y, igge ing in an
imp o emen in FFA emo al by inc easing FFA es e i ica ion in TG and esul ing in
an inc ease o insulin sensi i i y (48).
4.1.4. Pe oxisome p oli e a o -ac i a ed ecep o s (PPARs)
PPARγ is a key ac o o adipocy e di e en ia ion. Adipose-speci ic PPARγ knockou
mice, has been ca ied ou . In his model, he e was an impai ed AT expansion,
p esen ed adipocy e hype ophy, and highe le els o plasma ic FFA. Besides, hese
mice we e mo e sensi i e o insulin esis ance and li e s ea osis induced by HFD.
When hese mice we e ea ed wi h TZDs (an i-diabe ic d ug ha has PPARγ as a a ge )
li e insulin esis ance emi ed al hough no o he e ec s we e obse ed (74). O he
membe o PPAR ecep o amily, PPARα, is a a ge o he ib a es, molecules ha a e
used o he ea men o hype iglyce idemia. PPARα is a ansc ip ion ac o ha is
in ol ed in a y acid oxida ion in issues wi h a high le el o a oxida ion and
pe oxisomal me abolism (li e , hea muscle o b own adipose issue). In AT, PPARα
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has been shown o a enua e adiposi y and o s imula e he sec e ion o adiponec in,
which is an insulin-sensi izing ho mone (75). Thus, 3T3L1 p e-adipocy e line and mice
ea ed wi h PPARα agonis s ha e been shown o induce adipogenesis, and o inc ease
a oxida ion by di ec induc ion o PPARα o e adipogenic and a oxida ion genes (75).
Bo h membe s o he PPAR amily, PPARγ and PPARα ca y ou hei unc ion as
he e odime wi h he Re inoid X ecep o alpha (RXRα) (76). Thus, i has been
desc ibed ha a adipocy e-speci ic RXRα-knockou mice can cause adipogenesis ailu e,
and canno inc emen AT e en a e HFD adminis a ion (77,78).
4.1.5. S e ol egula o y elemen binding ac o s (SREBFs)
SREBFs a e ansc ip ion ac o s known o con ol choles e ol and a y acid
biosyn hesis, as well as adipogenesis in AT. SREBF1 has wo iso o ms, he SREBF1c
( he mos exp essed in AT wi h a key ole in adipogenesis) and SREBF1a. These
iso o ms a e de e mined by he ansc ip ion s a ing si e (79). Al hough he di e en
iso o ms o SREBF p esen some unc ional o e lap, SREBF1c has a mo e p e alen
ac ion in lipid biosyn hesis while SREBF2 has a p e alen ole in choles e ol
biosyn hesis. By con as , SREBF1a has a ole in bo h, a y acid and choles e ol
biosyn hesis (80–82). SREBF1c and SREBF2 ha e lowe gene exp ession le els in
VAT o obese people espec o lean people. I has al eady been shown ha his
exp ession is ees ablished o lean-like alues a e ba ia ic su ge y in obese people
(83). Fu he mo e, SREB1c exp ession in AT has been demons a ed o espond o ood
and calo ic in ake. Thus, ed can p omo e SREBF1c down- egula ion while as ing and
calo ic es ic ion ha e been shown o s imula e AT SREBF1 exp ession (79). SREBF1
o e exp ession is esponsible o he oxida i e s ess imp o emen obse ed in calo ic
es ic ion die s (79). In he o he way a ound, oxida i e s ess is capable o inhibi ing
In odu ion
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heal hy AT expansion h ough he supp ession o he SREBF1c-media ed lipogenic
pa hway (84). In animal models, i has been demons a ed ha SREBF2 p o ein in
adipocy e hype ophy is ac i a ed, which leads o an inc ease in he p oduc ion o
cheme in, and adipokine posi i ely ela ed o Me S (85).
4.1.6. S ea oyl-CoA-desa u ase (SCD)
SCD is a key enzyme ha ca alyzes he a e-limi ing s ep o monounsa u a ed a y
acids (MUFFAs) om sa u a ed a y acids, specially om s ea oyl-CoA and palmi oyl-
CoA, gi ing as a esul olea e and palmi olea e (86,87). I is long known ha
polyunsa u a ed ee a y acids (PUFFAs) exe s an inhibi o y e ec o e SCD gene
exp ession (87). I has been p o en in mice, ha a lack o SCD lowe s adiposi y by he
inc ease in he me abolic a e, he he mogenesis and he β-oxida ion, and a dec ease in
he lipogenesis pa hway (87).
4.1.7. Li e X ecep o be a (LXRb)
LXRb is a ansc ip ion ac o ac i a ed by ligand, which belongs o he nuclea ecep o
amily and ha is in ol ed in gluconeogenesis, choles e ol and in lamma ion (88).
LXRb is ac i a ed upon choles e ol b eakdown p oduc s oxys e ols and hen dime ize
wi h i s pa ne RXRα o ca y ou i s unc ion (89,90). This biological unc ion is
mainly ela ed o he lipogenesis pa hway, being o ins ance Fa y acid syn hase (FAS)
and Ace yl-CoA ca boxylase (ACC) some o he a ge genes implied. O he a ge
genes o LXR in ol e he choles e ol anspo e s ATP binding casse e anspo e s A
(ABCA) and G (ABCG), he SREBF1c ansc ip ion ac o , and he key a e-limi ing
enzyme o he biosyn hesis o monounsa u a ed a y acids, he SCD (89). Thus, LXR
ac i a ion has been shown o ha e bene icial e ec s in me abolism by: 1) inc easing
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in lamma ion indi ec ly ia lipo oxici y, bu a di ec modula ion o insulin pa hway in
he adipocy e has been desc ibed. This e ec o e insulin signaling implies he
inhibi ion o he kinase ac i i y by he insulin ecep o (IR), ia he inac i a ion o he
Insulin ecep o subs a e 1 (IRS1) and by he des abiliza ion o he in e ac ion
IR/ca eolin 1 (CAV1) (109) (Figu e 11).
Figu e 11. TNF signaling on AT. TNF in e ac s wi h i s ecep o TNFR1 which can induce
apop osis, ce amide p oduc ion, lypolisis, ER oxida i e s ess, mi ochond ial dys unc ion and
al e ed adipokine p o ile, ac o s ha can e en ually lead o inhibi ion o insulin signaling and
he e o e o insulin esis ance. TNF migh also ac h ough TNFR2 which could also p o oke an
induc ion o apop osis and a dec ease o insulin sensi i i y by down- egula ion o GLUT4 and
IRS-2 (47).
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Since he low-g ade in lamma ion has been associa ed o me abolic disease, ea men s
agains TNF and/o i s pa hway could be sui able o ea diso de s associa ed wi h his
ch onic in lamma ion, impai ed glucose ole ance and dyslipidemia (47). I has also
shown ha TNF co ela es posi i ely wi h he size o he adipocy es, which in u n has
been ela ed o he gene a ion o me abolic diso de s (109,110). Gi en he di ec and
indi ec ac ion o TNF o e he biology o AT and he lipid and glucose me abolism, i
is no su p ising he ele an ole his ac o could ha e in he e iology o he Me S and
i s complica ions (111).
5. ADIPOSE TISSUE AND COLORECTAL CANCER
AT can deli e molecules and p omo e me abolic s a es, which in u n can a ec o he
issues and p omo e disease. In his sense, he possible ole o AT in he de elopmen o
some kind o cance s has gained in e es . As i is desc ibed p e iously, obesi y and AT
dys unc ion has been ela ed o a ch onic low-g ade in lamma ion (112). In connec ion
wi h his, ch onic in lamma ion is well known o be a isk ac o o de eloping cance
including colo ec al cance (CRC) (113,114). In his manne , se e al s udies ha e no ed
he ela ionship be ween CRC and low g ade in lamma ion (115). CRC subjec s p esen
a dys unc ional AT, which migh be a key con ibu o o he in lamma o y s a e h ough
he sec e ion o se e al p oin lamma o y ac o s such as TNF, IL-6, and NFκB pa hway
(116).
In lamma o y p ocesses could no be he only ela ionship be ween AT and CRC.
Me abolic de e io a ion has been also desc ibed o inc ease he cance incidence,
including CRC (117–120). Thus, he ela ionship be ween in lamma ion and me abolic
de egula ion has been desc ibed. Fo ins ance, N κB p o-in lamma o y pa hway has
been desc ibed o be a p omo e o in lamma ion in AT, leading o me abolic diso de s
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(121). In his line, s a egies based on he dis up ion o N κB ac ion has been p oposed
o amelio a e diabe es, hype glycemia and insulin esis ance (121).
Gi en his ela ionship be ween in lamma ion and CRC, and he capaci y o AT o
gene a e low-g ade in lamma ion, i is o in e es he s udy o he possible mechanisms
ha lead o his in lamma ion in AT. Besides, i would be o g ea in e es he sea ch o
he apeu ic app oxima ions o a oid his p o-in lamma o y s a e in AT. In his sense,
me o min, one o he ea lies d ugs used o ea diabe es, has been desc ibed o inhibi
in lamma ion in a p ocess in which N κB is in ol ed. Me o min has been shown o
amelio a e adipose issue in lamma ion, and o p omo e mac ophage pola iza ion o he
an i-in lamma o y M2 pheno ype (122). In addi ion, a lowe isk o su e ing cance
disease has been desc ibed in subjec s who unde go me o min ea men (123,124).
A po en an i-in lamma o y molecule is i amin D (VD) (125–127). VD was i s
iden i ied by i s ole in s imula ing in es inal calcium in ake and bone mine aliza ion,
being low le els o his i amin ela ed o dec eased bone mine al densi y and
os eopo osis (128). VD is syn he ized om 7-dehyd ocholes e ol in he skin in a
eac ion ca ied ou by UVB ligh , gi en as a esul he p e- i amin D, which is u he
con e ed by hea o VD. This o m is no ac i e ye , and VD is u ned in o 25-
hyd oxy i amin D (25(OH)D) by CYP27A1, hyd oxyla ion ha occu s mainly in he
li e . 25(OH)D is he majo o m o se um i amin D and i s le els ha e been obse ed
o be a good indica o o VD s a us. This o m is hen u he con e e in he kidney o
he ac i e o m, 1,25-dihyd oxy i amin D (1,25(OH)2D) by CYP27B1. Kidney
CYP27B1 exp ession is s imula ed by pa a hy oid ho mone (PTH) and down- egula ed
by FGF23 and i s own p oduc 1,25(OH)2D (129). 1,25(OH)2D s imula es i s own
deg ada ion by he 24-hyd oxylase CYP24A1, which ca alyzes he con e sion o
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25(OH)D and 1,25(OH)2D o calci oic acid and o he inac i e me aboli es (129,130)
(Figu e 12).
Figu e 12. Vi amin D me abolism om p e- i amin D o he ac i e o m 1,25-dihyd oxy
i amin D.
VD ecep o (VDR) has been desc ibed o be exp essed in a wide ange o issues and
cell ypes, and i is hough ha he non-classical ac ions o VD (such as inhibi ion o
p oli e a ion, mac ophage modula ion, e minal di e en ia ion s imula ion o insulin
p oduc ion s imula ion) a e exe ed ia i s in e ac ion wi h i (128). Lack o VD,
speci ically he majo plasma o m o VD, he 25(OH)D has been ela ed o an inc ease
in he de elopmen o CRC (131). AT can exp ess p o eins ela ed o VD me abolism
(132), and i has been p oposed ha i can ac as VD s o age issue (133). I has been
shown ha he ac i e o m o VD, 1,25(OH)2D3, is able o modi y adipocy e and AT
physiology ia VDR ac ion (134,135), dec easing he exp ession o p o-in lamma o y
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cy okines in AT (136). The e o e, VD could be o he ac o ha could be in ol ed in
he egula ion o AT in lamma ion and could con ibu e o he biology o CRC.
6. EPIGENETICS
Epigene ics conce ns he in o ma ion con eyed h ough cell di ision and ha no
implies changes a he DNA sequence. Epigene ics shape di e en ia ion p ocesses, and
i is he oo o he di e ences obse ed be ween cellula ypes o o gans (137). The e
a e basically wo epigene ic egula ion landscapes: DNA me hyla ion, which occu s a
cy osines adjacen o guanines (CpG); and his one modi ica ions, which is mo e
a iable and di e se han DNA me hyla ion a CpG (137).
6.1. DNA me hyla ion
DNA me hyla ion is a p ocess in which a co alen me hyl-g oup is added o he ca bon
5 o a cy osine-py imidine ing (5mC) in a CpG nucleo ide. Mos o he DNA
me hyla ions a e sp ead in ansposons and mobile DNA sequences (SINE, LINE, e c),
while DNA me hyla ion a he p omo e o i s exon o genes ep esen s a small
pe cen age o whole DNA me hyla ion in he genome (138). I is hough ha DNA
me hyla ion was i s selec ed e olu iona y as a mechanism o s op he eplica ion o
mobile sequences in he genome (138). Un-me hyla ed CpG can accumula e in he
p omo e o genes, elemen s ha a e called CpG islands. Un-me hyla ed CpG island
would assu e ha ansc ip ion ac o s and he ansc ip ion machine y a e bound o he
igh place in he p omo e (138). A ound 75% o all genes ha e CpG island in hei
p omo e , being suscep ible o DNA me hyla ion con ol (138). While DNA
me hyla ion a CpG islands in he p omo e o genes a e ela ed o gene ep ession,
DNA me hyla ion in he body o he gene (which a e usually hype -me hyla ed) has
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been epo ed o ac i a e gene exp ession, maybe by inc easing he e iciency o he
ansc ip ion (139–141).
DNA me hyla ion is ca alyzed by DNA me hyl- ans e ases (DNMTs). These enzymes
ca alyze he con e sion o un-me hyla ed o me hyla ed CpG in a p ocess in which S-
adenosylme hionine (SAM) ac s as me hyl-dono . In humans, he e a e se e al
DNMTs: DNMT1, DNMT2, DNMT3A, DNMT3B and DNMT3L. F om hese,
DNMT1, DNMT3A and DNMT3B ha e DNA-me hyl ans e ase ac i i y while
DNMT3L and DNMT2 do no conse e his capaci y e en hough can ei he ac as
co ac o s o he o he DNMTs (in he case o DNMT3L) o me hyla e RNA ( o
DNMT2) (142). DNMT3A and DNMT3B ha e been desc ibed as me hyl ans e ases
“de no o”, which a e in cha ge o es ablishing new DNA me hyla ed ma ks
ubiqui ously and in an un-speci ic way. Once he ma k is es ablished, DNMT1 has been
shown o main ain he DNA pa e n ough he eplica i e cell cycles by ecognizing
hemi-me hyla ed DNA (142,143). Con a y o DNMT1 and DNMT3A/B, DNMT2 has
been demons a ed o me hyla e RNA ins ead o DNA, modi ica ion ha has been
p oposed o a oid RNA agmen a ion and egula ed p o ein ansduc ion. E en hough
is a RNA modi ie , he enzyme e ol ed om DNMTs ha wi h sub le changes inally
acqui ed his new unc ion (142) (Figu e 13).
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Figu e 13. DNA me hyla ion eac ion. DNMTs use as subs a es a cy osine nea a guanine and
S-adenosylme hionine (SAM). In he eac ion, he me hyl g oup is ans e ed o he ca bon 5 o
he cy osine ing, p oducing 5-me hyl-cy osine. As a esul S-adenosylhomocys eine (SAH) is
also p oduced ha can be ecycle o o m SAM. Abb e ia ions: Cy osine (C); DNA-
me hyl ans e ases (DNMTs); 5-me hyl-cy osine (5mC).
DNA me hyla ion is a dynamic p ocess and can be modi ied acco ding o en i onmen al,
gene ics and s ochas ic ac o s. The e o e, a ce ain CpG can be me hyla ed and un-
me hyla ed (144). DNA de-me hyla ion can occu s bo h, by enzyma ic ac ion o by
passi e de-me hyla ion. Passi e de-me hyla ion would ake place in successi e
eplica ions wi h a low ac i i y o he me hyla ion machine y, hough p oducing a
dilu ion o 5-me hyl-cy osine (5mC) ( o med by he ans e s o he me hyl g oup o he
ca bon 5 o he cy osine ing) gi ing as a esul un-me hyla ed DNA (145,146). The
ac i e de-me hyla ion p ocess implies he ac ion o Ten-ele en ansloca ion (TET)
membe amily. These enzymes ha e been epo ed o ca alyze he oxida ion o 5mC o
5-hyd oxime hylcy osine (5hmC) in a p ocess in which molecula oxygen and α-
ke oglu a a e ( ha is con e ed o succina e) a e necessa y. In u n, 5hmC can be u he
oxidized by TET o 5- o mylci osine (5 C), and 5 C o 5-ca boxylci osine (5caC), again
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wi h he pa icipa ion o oxygen and α-ke oglu a a e (145,146). 5hmC has been ela ed
o ac i e genes and is hough o con ibu e o he cell-speci ic se o exp essed genes
obse ed among cellula ypes, al hough he exac mechanism by which exe s his
egula ion is no ully unde s ood (147–149). The es o a ion o hese oxidized o ms o
cy osine can be ca ied ou in a passi e way as well, wi h dilu ion du ing ounds o cell
eplica ion, o in an ac i e way. In he ac i e way, Thymine DNA glycosylase (TDG)
has been shown o excise 5caC and 5 C, a e wha he cy osine is es o ed by he base
excision epai (BER) pa hway (145,146) (Figu e 14). The e o e, unlike he me hyla ion
p ocess, he DNA de-me hyla ion mechanism is a complex pa hway whe e mo e s udies
would be necessa y o expand he knowledge and weigh he impo ance o he di e en
ac o s in ol ed.
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Figu e 14. DNA de-me hyla ion p ocess. A e me hyla ion o cy osine by DNMTs, TET
successi ely oxidizes 5mC o 5hmC, 5 C and 5caC. 5hC, 5 C and 5caC can be dilu ed o
cy osine du ing he ollowing ounds o eplica ion (b oken a ows) in wha is known as passi e
de-me hyla ion. Addi ionally, 5 C and 5caC can be excised by TDG a e wha he cy osine can
be es o ed by he BER pa hway. Abb e ia ions: Cy osine (C); 5-me hylcy osine (5mC); 5-
hyd oxyme hylcy osine (5hmC); 5- o mylcy osine (5 C); 5-ca boxylcy osine (5caC); DNA-
me hyl ans e ases (DNMTs); S-adenosylme hionine (SAM); S-adenosylhomocys eine (SAH);
en-ele en ansloca ion enzymes (TET); α-ke oglu a a e (α-KG); hymine DNA glycosylase
(TDG); base excision epai pa hway (BER).
6.2. His one modi ica ions
DNA in he nucleus is associa ed o his ones in wha is called he nucleosome. A pai o
each H2A, H2B, H3 and H4 his one ypes o ms he nucleosome (Figu e 15). These
his ones a e suscep ible o pos - ansla ional modi ica ions ha can modi ied he
s eng h o he DNA union wi h he complex, a ac o he egula o y ac o s and in u n
egula e ch oma in s uc u e, gene ac i i y and DNA epai . Fo ins ance, his one
ace yla ion o lysine esidues p oduces de blockage o posi i e cha ges, esul ing in a
weake in e ac ion wi h he DNA and making he DNA mo e accessible o o he
egula o y ac o s (polyme ase, ansc ip ion ac o s, e c.) (150–152).
While DNA modi ica ions a e basically educed o 5mC, his ones can be modi ied a
he same deg ee as any o he p o eins, modi ica ions ha mainly ake place in he N-
e minal ail. Tha means, he e is a wide ange o possible modi ica ions such as
me hyla ion, phospho yla ion, sumoyla ion, ubiqui ina ion, glycosyla ion, ace yla ion,
p opionyla ion, bu y yla ion, c o onyla ion o ci ullina ion. Lysines a e he esidue
mo e o en modi ied, al hough modi ica ions in o he amino acids like a ginine, se ine
o h eonine has been epo ed. These modi ica ions ha e been desc ibed o be ca ied
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ou o a se ies o his one modi ie such as his one ace yl ans e ases (HATs), his one
meh yl ans e ases (HMTs) o phospha ases among o he s. In u n, hese ma ks ha e
been shown o be emo ed by p o eins called e ase s, o ins ance his one deace ylases
(HDACs) ( ha emo e ace yl g oups) o his one deme hylases (HDMs) (which emo e
me hyl g oups). Di e en om DNA me hyla ion ha is usually linked o gene
ep ession (al hough as i is discussed he e a e some excep ions), his one modi ica ions
can be in ol ed in gene ep ession, gene ac i a ion, DNA epai , ch oma in s uc u e e c.
Besides, he ole o some modi ica ions a e di icul o unde s and since many o hese
modi ica ions occu s a he same his one and my iads o possible combina ions makes
his one egula o y landscape a complex ield o s udy (150,151).
Figu e 15. Nucleosome and his one modi ica ions. Nucleosome is composed by a pai o each
H2A, H2B, H3 and H4 his one ypes (1), whe e DNA is w apped a ound he s uc u e.
Addi ionally, his ones can su e pos - ansla ional modi ica ions in hei aminoacidic chain. (2)
Summa iza ion o he mos common N- e minal modi ica ions a H2A, H2B, H3 and H4 his one
ypes. Adap a ion om (153).
E en hough i s complexi y, some his one modi ica ions ha e been la gely s udied.
Thus, di-me hyla ion a lysine (K) 4 and i-me hyla ion a K4, K36 and K79 o H3 ha e
been associa ed o ansc ip ion ac i a ion. On he con a y, T i-me hyla ion a K9 and
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pe missi e ch oma in, which gi es o a aise o gene exp ession o genes ela ed o
g ow h o p oli e a ion (152,176). By con as , si uins (class III HDAC) has been
shown o pe o m his one de-ace yla ion in a p ocess in which oxidized nico inamide
adenine dinucleo ide (NAD+) is equi ed. NAD+ is a senso o he me abolic s a us and
i is implied in se e al oxida i e pa hways such us glycolysis, β-oxida ion and he TCA
cycle. NAD+ de iciency in diabe es, aging o in mice ed wi h HFD has been shown o
impai ed si uin ac ion (152). I has been desc ied ha si uin 6 (SIRT6) can be
s imula ed by FFA. Lack o SIRT6 has been shown o up- egula e he glycoly ic
pa hway, leading o a se e e hypoglycemic s a e. Thus, i is hough ha SIRT6
s imula ion h ough FFA ( o example du ing β-oxida ion) could p oduce he
inac i a ion o glycoly ic genes (152) (Figu e 13).
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Figu e 13. In e play be ween me abolism and epigene ic modi ica ions. E ec s o me abolic
in e media ies on his one ace yla ion (A), his one de-ace yla ion (B), and DNA and his one
me hyla ion and de-me hyla ion (C). Adap a ion om (152).
6.4.1. Role o li es yle and nu i ional condi ions in he epigene ics o obesi y and
me abolic disease
Gi en he in e play obse ed be ween epigene ics and me abolism, i is no su p ising
he e o s ha esea che s a e pu ing in ying o unde s and wha could be he ole o
epigene ics in he e iology o he me abolic diseases. In his sense, Du ch amine
( amine ha ook place in Ne he land du ing he 1944-1945 win e a he end o he Wa
Wo ld II) has shed ligh on he nu i ional e ec s du ing in-u e us condi ion o e DNA
me hyla ion and adul hood me abolic disease. Thus, unde -nu i ion condi ion has been
ela ed o BMI and me abolic disease h ough speci ic DNA me hyla ion ma ks a genes
ha egula ed lipid o glucose homeos asis as well as adipogenesis (177). Fo ins ance,
i has been shown in his Du ch amine popula ion ha DNA me hyla ion a
se ine/ h eonine-p o ein kinase pim-3 (PIM3) ( ac o in ol ed in glucose me abolism)
could explain BMI in adul hood. DNA me hyla ion a hio edoxin in e ac ing p o ein
(TXNIP), gene ha egula es β-cell unc ion, and ATP binding casse e sub amily G
Membe 1 (ABCG1), which is in ol ed in lipid me abolism, was able o explain
( oge he wi h o he CpG posi ions) up o 80% o he associa ion obse ed be ween he
amine and he TG le els. Du ing ea ly s age ges a ional amine CpG ma ks nea 6-
phospho uc o-2-kinase/F uc ose-2,6-biphospha ase 3 (PFKFB3) (in ol ed in
glycolysis) and Me hyl ans e ase like 8 (METTL8) (adipogenesis) we e shown o
in luence TG le els as well (177).
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As i is desc ibed abo e, DNA me hyla ion elies on SAM as he me hyl-g oup dono .
SAM le els depend on me hyl-g oup dono nu ien s such as choline, me hionine, ola e,
e c. I has been desc ibed ha ma e nal consump ion le els o hese me hyl-dono s jus
be o e p egnancy and du ing p egnancy can de e mined he DNA me hyla ion le els in
he newbo n o genes ela ed o me abolism and adipogenesis like RXRα, insulin like
g ow h ac o 2 (IGF2) and LEP, as well as o he DNA me hyl- ans e ase DNMT1
(178).
DNA me hyla ion pa e n canno only be es ablished du ing he de elopmen al pe iod,
bu can also be modi ied in adul hood unde se e al condi ions. Fo ins ance, in a
andomized con ol ial whe e subjec s we e exposed o Sa u a ed o Polyunsa u a ed
a y acids (SFA and PUFA, espec i ely) o e eeding du ing 7 weeks, DNA
me hyla ion changes speci ic o SFA and PUFA eme ged. The e we e changes a genes
in ol ed in me abolism and in lamma ion in AT like FTO, INSR, Neu onal g ow h
egula o 1 (NEGR1), Fa y acid binding p o ein 1 (FABP1), Fa y acid binding p o ein
2 (FABP2), PPARG coac i a o 1 alpha (PPARGC1α), Melanoco in 2 ecep o
(MC2R), melanoco in 3 ecep o (MC3R), TNF o IL-6, among o he s. Mo eo e ,
DNA me hyla ion a se e al loci a baseline we e associa ed wi h he pe cen age o
body weigh inc ease a e he ial (179). As well as ood, exe cise has also been ela ed
o DNA changes in adipose issue. In a six-mon h in e en ional s udy, i has been
desc ibed changes in DNA me hyla ion in AT a se e al CpGs o genes which ha e
been associa ed o obesi y, diabe es and adipocy e me abolism such as T ansc ip ion
ac o 7 like 2 (TCF7L2), Po assium ol age-ga ed channel sub amily Q membe 1
(KCNQ1), His one deace ylase 4 (HDAC4) o Nuclea ecep o co ep esso (NCOR)
(180). Li es yle habi s as smoking has been ela ed o changes a DNA me hyla ion in
AT. These changes we e a speci ic loci ha we e in u n associa ed o u u e weigh
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gain and me abolic disease isk a e smoking cessa ion. Fu he mo e, i has been shown
ha a e smoking cessa ion, he DNA me hyla ion smoking-signa u e pa e n had a
longe las ing in luence on DNA me hyla ion han he mRNA pa e n (181).
His one de egula ion has also been ela ed o obesi y, me abolic disease and ela ed
diso de s. Fo example, Plan homeodomain inge wo (PHF2) (which is an his one
deme hylase) has been shown o egula e CEBPα and PPARγ exp ession. Thus, i has
been epo ed ha speci ic Plan homeodomain inge wo (PHF2) knockou mice
display abno mal adipogenesis and a subsequen dec ease in AT mass. Mo eo e , i is
hough ha PHF2 is impo an in he egula ion o se e al me abolic issues being
in ol ed in he me abolism o glucose and lipids (182). A o al epigene ic emodeling a
he AT LEP p omo e has been desc ibed in Die induced obese (DIO) mice eed wi h
n-3 PUFAs. These changes comp ised he p omo e binding inc ease o Me hyl-CpG-
binding domain p o ein 2 (MBD2), DNMTs and se e al HDACs, wi h a subsequen
inc ease o DNA me hyla ion and a dec ease in he ace yla ion o H3 and H4.
Fu he mo e, a dec ease o H3K4me3 was obse ed. All o hese changes would be
in e p e ed as a compensa o y mechanism ying o deal wi h he ex a-ene ge ic
consump ion expe imen ed (183). This s udy poin s ou how he epigene ic s a e o a
ce ain ac o in ol ed in he con ol o ene gy balance can deeply change in adul hood
igge ed o changes in he nu i ional s a us.
As p e iously desc ibed, his one modi ica ions a e s ongly associa ed o me abolism,
and some o he e ase s and w i e s in ol ed ha e been associa ed o me abolic
diso de s (152). Howe e , he e a e no s udies abou he his one ma ks p o ile in human
AT, which could gi e us a be e knowledge abou he ac ual epigene ic s a us and abou
i s possible ole in he e iology o he AT ela ed dis u bances. Conce ning AT, his one
modi ica ions s udies ha e been mainly ca ied ou in cul u es (3T3L1 o p ima y p e-
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adipocy e cul u es) (184,185), and o a less ex end in mice. Thus, i has been epo ed
an inc ease o H3K4me2 en ichmen in db/db mice compa ed wi h db/m a he p omo e
o ATPase, H+ anspo ing, Lysosomal V0 subuni D2 (A p6 0d2), Ma ix
me allopep idase 12 (Mmp12), T igge ing ecep o exp essed on myeloid cells 2
(T em2) and C- ype lec in domain amily 4, membe d (Clec4d) genes, while his ma k
was lowe in Glycop o ein ( ansmemb ane) nmb (Gpnmb) (186).
6.4.2. Epigene ics al e a ions in colo ec al cance
Epigene ic abe a ions in he con ex o CRC ha e been s udied, which could lead o
new sub ypes classi ica ion based on pha macological esponse, and he e o e leading
o new ea men s a egies (187). Indeed, AT has been ela ed o CRC appea ance and
p og ession (188), al hough he ole o AT epigene ic egula ion and i s ela ionship o
CRC has been poo ly s udied. Epigene ic modi ica ions in pe i- umo al AT ha e been
shown o b eas and p os a e cance s. Thus, an al e ed DNA me hyla ion pa e n has
been desc ibed in he su ounding b eas malignan cells, al e a ions ha a e ela ed o
ch omosomal o ganiza ion and wi h ad e se clinical ou come (189). AT DNA
me hyla ion pa e n has also been implica ed no only in he appea ance o me abolic
diseases bu also o he de elopmen o cance by al e ing he me abolism and
inc easing he in lamma o y en i onmen (190). Di e en ia ed DNA me hyla ion has
been epo ed o genes ela ed o lipid me abolism and immune sys em (as Acyl-CoA
dehyd ogenase medium chain (ACADM), Ca ni ine palmi oyl ans e ase 1B (CPT1B),
Ca ni ine palmi oyl ans e ase 1C CPT1C, Fa y acid desa u ase 1 (FADS1),
Monoacylglyce ol O-acyl ans e ase 1 (MOGAT1), Monoacylglyce ol O-
acyl ans e ase 2 (MOGAT2), Solu e ca ie amily 44 membe 2 (CTL2) o TAP
binding p o ein (TAPBP)) in pe i-p os a ic AT o obese and o e weigh e sus lean
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subjec s wi h p os a e cance , which could be ul ima ely con ibu ing o he wo sening
and di e en cance p og ession obse ed in subjec s wi h highe adiposi y (190).
Since epigene ic can be he esul o gene ic, age, issue speci ici y and a gi en
en i onmen al condi ions, i s s udy can poin ou unc ional ac o s o pa hways ha
could be a ec ing o he AT unc ioning and con ibu ing o me abolic disease and o he
diso de s associa ed (as CRC), being a mo e accu a e ool han gene ic s udies (which
gi es us a ixed scena io) o in e his ela ionships (137).
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!HYPOTHESIS
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87
1- Adipose issue DNA me hyla ion a LPL p omo e could be egula ing LPL
mRNA and be ela ed o se um iglyce ide le els, hus pa icipa ing in he
e iology o me abolic synd ome. Besides, hese le els o LPL me hyla ion could
be ela ed o he esponse in iglyce ide clea ance a e a a o e load.
2- O e all DNA me hyla ion s a e o he adipose issue ia LINE-1 as well as he
DNA me hyla ion p omo e egions o genes ela ed o adipogenesis, lipid
me abolism and in lamma ion could be al e ed in me abolic synd ome playing a
ole in he e iology o he me abolic disease.
3- Adipose issue DNA me hyla ion a C3 p omo e could be egula ing C3 mRNA
and be ela ed o se um ASP le els in obesi y, being e ol ed in he highe p o-
in lamma o y s a us and impai ed lipid s o age p esen in ex eme obesi y.
4- Adipose issue H3K4me3 en ichmen a he p omo e o se e al genes ela ed o
adipogenesis, adipose issue me abolism and in lamma ion could be modi ied in
acco dance wi h he obesi y deg ee and me abolic s a us, which could explain in
pa he de elopmen o obesi y and me abolic disease.
5- Low le els o i amin D could be ela ed o adipose issue in lamma ion and
adipose issue DNA me hyla ion in subjec s wi h colo ec al cance , which in
u n could be con ibu ing o colo ec al cance de elopmen .
Resul s
95
MANUSCRIPT 1. Adipose Tissue LPL Me hyla ion is Associa ed wi h
T iglyce ide Concen a ions in he Me abolic Synd ome
Cas ellano-Cas illo D. e al. Clinical Chemis y. 2018;64(1):210-218.
Resul s
96
In o de o ca y ou he objec i e 1, he le els o DNA me hyla ion o se e al LPL-
p omo e -CpG dinucleo ides in a CpG island egion we e analyzed and ela ed o he
gene and p o ein exp ession le els isce al adipose issue (VAT) in indi iduals wi h
(Me S) and wi hou (non-Me S) me abolic synd ome. To pe o m his, VAT samples
we e collec ed om lapa oscopic su gical pa ien s, and le els o LPL mRNA, LPL
p o ein and LPL DNA me hyla ion we e measu ed by qPCR, wes e n blo and
py osequencing. Biochemical and an h opome ic a iables we e analyzed. Mo eo e , a
subse o indi iduals unde wen a die a y a challenge es and pos p andial
iglyce ides we e de e mined.
An h opome ic and biochemical cha ac e is ics o he pa ien s
Table 1A shows he an h opome ic and biochemical pa ame e s o he non-Me S and
Me S pa ien s. As expec ed, he Me S pa ien s had signi ican ly inc eased glucose,
iglyce ides, wais ci cum e ence, sys olic and dias olic blood p essu es, BMI, insulin,
HOMA-IR, o al choles e ol, LDL choles e ol, ApoA1, ApoB and se um lep in le els in
compa ison o he non-Me S subjec s, whe eas HDL choles e ol, ApoA1 and
adiponec in alues we e signi ican ly lowe compa ed wi h he non-Me S subjec s.
Table 1. Biochemical and an h opome ic pa ame e s in non-me abolic synd ome subjec s
(Non-Me S) and me abolic synd ome subjec s (Me S) in he desc ip i e s udy (A) and he
subpopula ion who unde wen he a o e load es (B).
(A) S udy popula ion
(B) Fa o e load
subpopula ion
Non-Me S
(N=70)
Me S
(N=64)
Non-Me S
(n=11)
Me S (n=26)
Age (yea s)
48.0±13.38
49.79±15.0
44.0±7.9
42.6±6.9
Male/Female (%)
51/49
40/60
27/73
48/52
BMI (Kg/m2)
32.2±10.8**
41.5±12.5
51.6±7.3
52.3±6.9
Wais ci cum e ence (cm)
101.5±21.2**
118.7±23.5
137.0±18.2
139.5±17.7
SBP (mm Hg)
124.7±17.6**
139.7±19.7
128.8±19.6
137.6±19.9
Resul s
97
DBP (mm Hg)
76.2±11.6**
82.6±11.1
83.6±11.9
82.6±12.1
Glucose (mg/dL)
92.7±11.9**
116.4±30.7
93.0±7.9
104.4±18.0
Insulin (pmol/L)
12.0±13.6*
17.8±11.4
26.0±27.4
23.2±13.8
HOMA-IR
2.5±2.0**
5.1±3.4
4.3±3.2
6.1±4.1
U ic acid (mg/dL)
4.7±1.3**
5.7±1.3
5.4±1.0
6.1±1.4
TG (mg/dL)
102.7±43.0**
160.1±64.6
105.1±62.0
142.3±53.5
Pos TG (mg/dL)
-
-
177.7±69.6
193.9±72.2
Choles e ol (mg/dL)
194.1±34.9**
212.3±42.1
174.7±48.5
201.5±38.6
HDL choles e ol (mg/dL)
54.5±12.8**
47.1±12.8
50.4±13.8
44.6±10.0
LDL choles e ol (F iedwald)
118.8±30.7*
133.2±32.5
95.6±37.0
124.9±33.6*
ApoA1 (mg/dL)
169.8±25.4*
155.6±26.6
158.3±30.9
148.0±21.6
ApoB (mg/dL)
93.8±22.9*
108.2±22.5
89.5±33.3
104.1±22.9
GOT (mg/dL)
21.0±12.3
20.0±11.5
22.3±8.8
24.8±13.7
GPT (mg/dL)
41.2±22.2
46.3±21.0
46.6±13.9
55.3±20.9
GGT (mg/dL)
56.6±186.5
40.4±27.7
28.6±10.2
34.8±22.9
CRP (mg/dL)
7.4±15.5
5.6±3.4
6.7±6.3
5.2±3.4
Lep in (ng/ml)**
22.5±26.3
47.1±31.3
58.3±22.0
65.8±26.1
Adiponec in (ug/ml)**
12.3±7.2
8.6±4.5
8.7±4.4
7.8±3.3
De ini ions: Body Mass Index (BMI), Homeos a ic Model Assessmen o Insulin Resis ance
(HOMA-IR), Baseline T iglyce ides (TG), Pos p andial T iglyce ides (Pos TG), High Densi y
Lipop o ein (HDL), Low Densi y Lipop o ein (LDL), Apolipop o ein A1 (ApoA1),
Apolipop o ein B (ApoB), Glu ama e-Oxaloace a e T ansaminase (GOT), Glu ama e-Py u a e
T ansaminase (GPT), Gamma Glu amyl T anspep idase (GGT), Sys olic Blood P essu e (SBP),
Dias olic Blood P essu e (DBP), C-Reac i e P o ein (CRP). * P<0.05 and ** P<0.01 conside ed
s a is ically signi ican be ween Non-Me S and Me S in each popula ion (A) and (B).
On he o he hand, Table 1B shows he an h opome ic and biochemical pa ame e s o
he subse o people who unde wen a o e load. Only mean LDL choles e ol was
ound signi ican ly highe in Me S compa ed o non-Me S pa ien s.
Measu es o DNA me hyla ion, LPL mRNA, and p o ein le els in adipose issue
Figu e 1 shows he LPL DNA me hyla ion and mRNA le els. The Me S pa ien s had
signi ican ly highe le els o DNA me hyla ion (P<0.001) (Figu e 1A) and lowe le els
o mRNA gene exp ession (P=0.012) (Figu e 1B) compa ed o he non-Me S subjec s.
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98
In e es ingly, his associa ion was con i med wi h a co ela ion analysis, which showed
a nega i e co ela ion ( =-0.306, P=0.004) be ween he DNA me hyla ion le els and
mRNA le els o LPL (Figu e 1C).
Figu e 1.- Mean and SE o LPL DNA me hyla ion le els (n=41 Non-Me S and n=46 Me S) (A)
and LPL ela i e mRNA (n=70 Non-Me S and n=64 Me S) (B) in non-me abolic (Non-Me S)
and me abolic synd ome (Me S) subjec s. Figu e 1C shows he co ela ion be ween bo h LPL
me hyla ion le els and LPL mRNA le els.
Finally, we used wes e n blo s o examine he p o ein le el o LPL o assess whe he he
exp ession le els we e ansla ed in o he inal p o ein p oduc s, con i ming a
signi ican ly lowe LPL p o ein exp ession in he Me S pa ien s in compa ison wi h he
non-Me S subjec s (Figu e 2A and Figu e 2B).
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Figu e 2.- A e age and SE o LPL p o ein le els quan i ied by wes e n blo in bo h non-
me abolic synd ome (Non-Me S) and me abolic synd ome (Me S) subjec s (n=10).
Associa ions be ween LPL le els and me abolic synd ome
We pe o med a co ela ion analysis o analyze he ela ionships be ween LPL DNA
me hyla ion and he LPL mRNA exp ession le els and he me abolic and
an h opome ic a iables p esen in he s udy subjec s (Table 2). We ound ha he
numbe o Me S componen s, BMI, wais ci cun e ence, glucose, as ing iglyce ide
concen a ions and se um lep in had signi ican and posi i e co ela ions wi h he LPL
DNA me hyla ion le els. Likewise, we ound signi ican nega i e co ela ions be ween
he LPL mRNA exp ession le els and he numbe o Me S componen s, BMI, wais
ci cum e ence, HOMA-IR, glucose concen a ions, baseline iglyce ide concen a ions,
and ApoB (Table 2). Finally, we ound signi ican posi i e co ela ions be ween LPL
mRNA exp ession and he se um concen a ions o HDL choles e ol and adiponec in
le els (Table 2). These esul s a e consis en wi h he ole o he LPL gene in
me abolism.
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Table 2. Co ela ions be ween LPL DNA me hyla ion (LPLme ) and LPL ela i e mRNA (LPL
mRNA) and se e al an h opome ic and biochemical pa ame e s.
De ini ions: Numbe o a iables o Me S p esen (Me S a iables), Body Mass Index (BMI),
Homeos a ic Model Assessmen o Insulin Resis ance (HOMA-IR), High Densi y Lipop o ein
(HDL), Low Densi y Lipop o ein (LDL), Log10 o Fas ing iglyce ides (Log10(TG)), Log 10
o pos p andial iglyce ides (Log10(Pos TG)), Sys olic Blood P essu e (SBP), Dias olic Blood
P essu e (DBP), Apolipop o ein A1 (ApoA1), Apolipop o ein B (ApoB). * P<0.05 and ** P
<0.01 conside ed s a is ically signi ican .
LPL me hyla ion
LPL mRNA
Me S a iables (0-5)
0.421**
-0.244**
BMI (kg/m2)
0.344*
-0.239**
Wais ci cum e ence (cm)
0.297**
-0.222*
HOMA-IR
0.175
-0.183*
Insulin (pmol/L)
0.155
-0.165
Glucose (mg/dL)
0.269*
-0.220*
Choles e ol (mg/dL)
0.182
0.035
HDL choles e ol (mg/dL)
-0.068
0.210*
LDL choles e ol (mg/dL)
0.098
0.039
Log10(TG) (mg/dL)
0.246*
-0.259**
Log10(Pos TG)
0.467**
-0.360*
SBP (mm Hg)
0.135
0.057
DBP (mm Hg)
0.111
0.026
ApoA1 (mg/dL)
-0.126
0.130
ApoB (mg/dL)
0.147
-0.301*
Lep in (ng/ml)
0.402**
-0.139
Adiponec in (ug/ml)
-0.039
0.378**
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Epigene ic ac o s associa ed wi h me abolic synd ome
In o de o s udy he ela ionship be ween LPL DNA me hyla ion and he pa ame e s
associa ed wi h Me S, and be ween he me hyla ion and mRNA le els o LPL we
pe o med eg ession analyses. Reg ession model 1 (Table 3 model 1) a e adjus men
o age, gende , BMI and HOMA-IR showed ha he s a is ically signi ican a iables
in p edic ing he inc ease in LPL p omo e me hyla ion le els we e he numbe o
componen s o Me S and he BMI. When we conside ed LPL mRNA as dependen
a iable and adjus ed by age, gende , BMI and HOMA-IR we ound ha LPL
me hyla ion was he only a iable signi ican ly associa ed wi h LPL mRNA a iabili y
(Table 3 model 2).
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Table 3. Reg ession analysis wi h LPL DNA me hyla ion (model 1) and LPL mRNA (model 2) le els as dependen a iable.
Model 1: LPL DNA Me hyla ion
(R=0.472; R2=0.223)
Model 2; LPL mRNA
(R=0.382; R2=0.147)
P
95% CI
P
95% CI
Age
0.066
0.584
-0.023-0.041
-0.029
0.814
-0.012-0.010
BMI
0.298
0.037
0.003-0.080
-0.104
0.492
-0.018-0.009
Gende
-0.115
0.302
-1.121-0.383
0.113
0.331
-0.140-0.410
Me S a iables (0-5)
0.349
0.009
0.126-0.837
-
-
-
HOMA-IR
-0.118
0.351
-0.216-0.078
-0.128
0.337
-0.077-0.027
LPL me hyla ion
-
-
-
-0.266
0.025
-0.166-(-0.011)
Independen a iables o model 1 a e Age, BMI, Gende , MS a iables and HOMA-IR; and age, BMI, gende , HOMA-IR and LPL
me hyla ion o model 2. Abb e ia ions: Body Mass Index (BMI), Numbe o a iables o Me S p esen (Me S a iables), Homeos a ic
Model Assessmen o Insulin Resis ance (HOMA-IR), Lipop o ein Lipase (LPL).
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Fu he mo e, we used logis ic eg ession analysis o assess he isk o su e ing Me S
isk acco ding o he me hyla ion le els in LPL DNA p omo e . LPL me hyla ion le el
was ound o be he only a iable signi ican ly p edic i e o he Me S s a e (dependen
a iable). In his eg ession, adjus ed by age, gende and LPL mRNA le els, an inc ease
in one uni in LPL me hyla ion esul ed in a mo e han wo- old highe likelihood o
ha ing Me S (Table 4).
Table 4. Logis ic eg ession wi h membe ship o no membe ship o Me S g oup as dependen
a iable, and age, gende , LPL me hyla ion and LPL mRNA as independen a iables. Men a e
used as e e ence gende (0).
NonMe S/Me S
OR (95% CI)
P
Age
1.003 (0.96-1.04)
0.865
Gende
Male
Female
1 ( e e ence)
1.927 (0.73-6.41)
0.158
LPL me hyla ion
2.092 (1.38-3.06)
0.000
LPL mRNA
0.464 (0.23-1.53)
0.282
Abb e ia ions: Lipop o ein Lipase (LPL).
Die a y Fa challenge
We designed a die a y a challenge es in humans o e alua e he ela ionship be ween
pos p andial iglyce ide and LPL me hyla ion le els. Posi i e co ela ions we e ound
be ween he baseline and pos p andial iglyce ide concen a ions and he LPL DNA
me hyla ion le els (Table 2, Figu e 3A and Figu e 3B). Acco dingly, we ound a
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nega i e co ela ion be ween LPL mRNA and bo h, he baseline and pos p andial
iglyce ide concen a ions (Table 2, Figu e 3C and Figu e 3D).
Figu e 3. The igu e shows he co ela ion o LPL DNA me hyla ion wi h he Log o as ing
iglyce ides le els (A) and Log o pos p and ial iglyce ides le els (B). (C) shows he
co ela ion be ween LPL gene exp ession and Log o as ing iglyce ides le els and (D) he
associa ion be ween LPL gene exp ession and Log o pos p and ial iglyce ides le els.
In a linea eg ession model adjus ed o age, gende , BMI and HOMA-IR we ound
ha LPL me hyla ion was he only a iable which explained he pos p andial
iglyce ide concen a ions (Table 5).
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Table 3. Pea son’s co ela ion be ween LINE-1 CpG posi ions (P1, P2, P3, P4, P5, P6) and he an h opome ic and biochemical a iables ela ed
o Me S. * p<0.05 and ** p<0.01 we e conside ed s a is ically signi ican .
Me S index
BMI
Wais
Glucose
Tg
HDL-cho
LDL-cho
SBP
DBP
HOMA-IR
LINE-1 P1
-0.167
0.057
-0.031
-0.246*
-0.088
0.113
0.082
0.162
0.02
-0.114
LINE-1 P2
-0.233*
0.025
-0.068
-0.334**
-0.208
0.074
0.028
0.171
0.010
-0.199
LINE-1 P3
-0.136
0.018
-0.011
-0.168
-0.072
-0.115
0.093
0.220
0.155
-0.101
LINE-1 P4
-0.068
0.042
0.012
-0.158
0.039
-0.112
0.077
0.168
0.010
-0.041
LINE-1 P5
-0.137
0.093
-0.037
-0.238*
0.016
-0.139
0.05
0.136
0.100
-0.088
LINE-1 P6
-0.19
-0.055
-0.05
-0.137
-0.166
0.028
0.052
0.066
0.016
-0.126
Abb e ia ions: Numbe o me abolic synd ome a iables p esen in he subjec o s udy (Me S index); Body mass index (BMI); T iglyce ides (TG); High-
densi y lipop o ein choles e ol (HDL-cho); Low-densi y lipop o ein choles e ol (LDL-cho); Sys olic blood p essu e (SBP); Dias olic blood p essu e (DBP);
Homeos a ic model assessmen o insulin esis ance (HOMA-IR); Long in e spe sed elemen 1 DNA me hyla ion a posi ions 1 o 6 (LINE-1 P1-P6). * and **
mean p<0.05 and p<0.01 espec i ely acco ding o Pea son’s co ela ion.
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Gene speci ic DNA me hyla ion in Me S e sus Non Me S
Adipogenic and lipid me abolism ac o s
We s udied genes ela ed o adipose issue de elopmen , as PPARA, PPARG and hei
he e odime pa ne RXRA. The e we e no di e ences a any o he CpG si es included
o PPARA, PPARG and RXRA (Figu e 1). Ne e heless, a endency o highe le els
o DNA me hyla ion in PPARA o Me S subjec s han in Non Me S was obse ed.
Resul s o he associa ion analyses showed a posi i e co ela ion be ween PPARA P2
wi h Me S index, TG le els and HOMA-IR. PPARG P1 co ela ed posi i ely wi h BMI,
while PPARG P1 and P3 we e nega i ely associa ed o DBP. In he case o he PPAR’s
pa ne RXRA, we ound a nega i e co ela ion be ween RXRA P1 wi h BMI and wais
ci cum e ence.
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113
Figu e 1. Adipogenic ac o s DNA me hyla ion le els. DNA me hyla ion p o ile ac oss he
CpG analyzed a he p omo e s o he adipogenic ac o s PPARA (A), PPARG (B) and he
PPARs pa ne RXRA (C) in bo h, Non Me S and Me S g oups. Values a e gi en as he
mean±SE. Pe oxisome p oli e a o -ac i a ed ecep o alpha (PPARA); Pe oxisome p oli e a o -
ac i a ed ecep o gamma (PPARG); Re inoid X ecep o alpha (RXRA).
Fu he mo e, a se o CpG si es inside genes ela ed only o lipid me abolism was also
py osequenced. No di e ences we e ound a any o he CpGs analyzed o SREBF1
and SREBF2 egula o s (Figu e 2A and Figu e 2B, espec i ely). The e we e no
signi ican DNA me hyla ion di e ences a any o he LRP1 CpG si es s udied ei he
(Figu e 2C). In he case o LPL, we ound an inc ease o DNA me hyla ion o he CpG
si ua ed a he posi ion 2 (LPL P2) (Figu e 2D). We did no ind di e en le els o
DNA me hyla ion a any o he CpG s udied o SCD and LXRB genes (Figu es 2E and
2F).
Fo hese genes, we obse ed ha Me S index co ela ed nega i ely wi h SCD P6, while
SCD P3 was nega i ely associa ed o BMI. Posi i e associa ions exis ed be ween TG
le els and LPL P3, and be ween HDL-cho and LRP1 P2. Fu he mo e, he e was a
nega i e associa ion be ween he choles e ol egula o SREBF2 and DBP, speci ically
wi h SREBF2 P2.
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Figu e 2. Lipid me abolism DNA me hyla ion. The igu e shows he DNA me hyla ion in Non
Me S and Me S g oups a each CpG o se e al ac o s ela ed o lipid me abolism as SREBF1
(A), SREBF2 (B), LRP1 (C), LPL (D), SCD (E) and LXRB (F). Values a e gi en as he
mean±SE. S e ol egula o y elemen binding ansc ip ion ac o 1 (SREBF1); S e ol egula o y
elemen binding ansc ip ion ac o 2 (SREBF2); Low densi y lipop o ein ecep o - ela ed
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115
p o ein 1 (LRP1); Lipop o ein lipase (LPL); S ea oyl-CoA desa u ase (SCD); Li e X ecep o
be a (LXRB). * means p<0.05 acco ding o a S uden ’s T- es .
In lamma ion ac o s
Due o he ela ionship be ween adipose issue and in lamma ion, we analyzed some
ac o s in ol ed in his p ocess. We analyzed 7 CpG si es inside he C3 gene p omo e ,
and we did no ind di e en DNA me hyla ion le els be ween bo h, Non Me S and
Me S subjec s (Figu e 3A). We s udied 5 CpG si es o he umo nec osis ac o (TNF)
as well. In his case, Me S subjec s p esen ed a lowe DNA me hyla ion le els a 3 ou
o he 5 CpG si es ha we e analyzed, conc e ely a posi ion 1, 2 and 3 (TNF P1-P3)
(Figu e 3B). The hi d ac o we s udied was lep in (LEP), in which we analyzed 4 CpG
si es a lep in sequence, which did no p esen signi ican di e ences be ween Non
Me S and Me S subjec s (Figu e 3C).
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116
Figu e 3. In lamma o y p omo e s DNA me hyla ion. Compa isons be ween he Non Me S and
he Me S g oup o DNA me hyla ion a di e en CpG om genes implied in in lamma o y
p ocesses as C3 (A), TNF (B) and LEP (C). Values a e gi en as he mean±SE. Complemen
ac o 3 (C3); Tumo nec osis ac o (TNF); Lep in (LEP). * means p<0.05 acco ding o a
S uden ’s T- es .
On he o he hand, a nega i e ela ionship was ound be ween Me S index and he DNA
me hyla ion le els o TNF P2, TNF P3, TNF P4 and TNF P5 (Table 4). Glucose
co ela ed in a nega i e way wi h he DNA me hyla ion o TNF P4 (Table 4).
Acco ding o iglyce ide le els, he e we e a nega i e co ela ions we e ound wi h
TNF P2 and P5. In e sely o TG, HDL-cho co ela ed posi i ely wi h TNF P1, P2, P5
(Table 4).
The e was also a nega i e co ela ion be ween TNF P4 wi h LDL-cho and DBP.
Fu he mo e, he e we e posi i e and signi ican co ela ions be ween LEP P1 wi h
LDL-cho, SBP and DBP (Table 4).
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117
Table 4. Co ela ion analyses be ween an h opome ic and biochemical a iables associa ed o Me S wi h some o he DNA me hyla ion a he CpG analyzed.
Only CpG ha p esen ed any signi ican associa ion a e ep esen ed.
Me S V
BMI
Wais
Glucose
Tg
HDL-cho
LDL-cho
SBP
DBP
HOMA-IR
PPARA P2
0.276*
0.076
0.165
0.166
0.392**
0.061
0.08
0.066
-0.025
0.229*
PPARG P1
-0.072
0.306*
0.169
-0.224
-0.194
0.015
-0.197
-0.2
-0.293*
-0.058
PPARG P3
-0.078
0.138
0.174
0.03
-0.139
0.021
-0.218
0.037
-0.283*
0.112
RXRA P1
-0.102
-0.298**
-0.229*
-0.052
0.025
-0.095
0.127
-0.066
-0.225
-0.032
SREBF2 P2
0.056
0.006
0.144
0.112
0.136
-0.032
0.189
-0.224
-0.262*
0.121
LRP1 P2
0.09
-0.065
-0.048
0.114
-0.215
0.373*
-0.055
0.192
0.180
0.251
LPL P3
0.135
0.029
0.089
0.128
0.245*
-0.102
0.085
0.126
-0.111
0.149
SCD P3
-0.056
-0.340*
-0.283
-0.096
-0.018
0.108
0.22
0.087
-0.117
-0.03
SCD P6
-0.325*
-0.116
-0.17
-0.141
-0.134
0.121
0.102
-0.275
-0.232
-0.172
TNF P1
-0.212
0.132
0.046
-0.034
-0.188
0.283*
-0.02
-0.010
-0.115
0.029
TNF P2
-0.420**
0.054
-0.061
-0.192
-0.273*
0.304*
-0.195
-0.188
-0.217
-0.196
TNF P3
-0.320*
0.151
-0.021
-0.094
-0.155
0.222
-0.109
-0.237
-0.242
-0.03
TNF P4
-0.330*
-0.006
-0.096
-0.278*
-0.203
0.098
-0.295*
-0.245
-0.305*
-0.133
TNF P5
-0.281*
0.132
-0.100
-0.153
-0.281*
0.380**
-0.132
-0.097
-0.008
-0.074
LEP P1
0.088
0.081
-0.159
0.061
-0.071
0.015
0.229*
0.264*
0.230*
0.028
Resul s
118
Abb e ia ions: Numbe o me abolic synd ome a iables p esen in he subjec o s udy (Me S
V); Body mass index (BMI); T iglyce ides (TG); High-densi y lipop o ein choles e ol (HDL-
cho); Low-densi y lipop o ein choles e ol (LDL-cho); Sys olic blood p essu e (SBP); Dias olic
blood p essu e (DBP); Homeos a ic model assessmen o insulin esis ance (HOMA-IR);
Pe oxisome p oli e a o -ac i a ed ecep o alpha DNA me hyla ion a posi ion 2 (PPARA P2);
Re inoid X ecep o alpha me hyla ion a posi ion 1 (RXRA P1); Lep in DNA me hyla ion a
posi ion 1 (LEP P1); S e ol egula o y elemen binding ansc ip ion ac o DNA me hyla ion a
posi ion 2 (SREBF2 P2); S ea oyl-CoA desa u ase DNA me hyla ion a posi ions 3 and 6 (SCD
P3 and P6); Tumo nec osis ac o DNA me hyla ion a posi ions P1 o P5 (TNF P1-P5);
Pe oxisome p oli e a o -ac i a ed ecep o gamma DNA me hyla ion a posi ions 1and 2
(PPARG P1 and P2); Lipop o ein lipase DNA me hyla ion a posi ion 3 (LPL P3); Low densi y
lipop o ein ecep o - ela ed p o ein 1 DNA me hyla ion a posi ion 2 (LRP1 P2). * and **
means p<0.05 and p<0.01 espec i ely
Reg ession analyses
To s udy he s eng h o he associa ion obse ed in he co ela ion analyses we
pe o med lineal eg ession analyses co ec ed by age, gende and BMI. We obse ed
ha he DNA me hyla ion le els o PPARA P2 and LPL P3 could explain TG le els
(Table 5).
Table 5. Lineal eg ession analysis wi h as ing iglyce ides as dependen a iable and PPARA
P2, LPL P3 and TNF P2 as independen a iables and co ec ed by age, gende and BMI.
Fas ing iglyce ides (R=0.566; R2=0.320)
β
P
CI 95 %
Age
0.111
0.425
-0.582-1.358
Gende
-0.268
0.047
-48.377-(-.312)
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119
BMI
-0.101
0.446
-1.825-0.816
PPARA P2
0.332
0.012
1.32-10.012
LPL P3
0.264
0.046
0.099-10.72
TNF P2
-0.117
0.347
-1.867-0.669
Body mass index (BMI); Pe oxisome p oli e a o -ac i a ed ecep o alpha DNA me hyla ion a
posi ion 2 (PPARA P2); Lipop o ein lipase DNA me hyla ion a posi ion 3 (LPL P3); Tumo
nec osis ac o DNA me hyla ion a posi ion 2 (TNF P2).
Fu he mo e, we pe o med a logis ic eg ession analyses (ha monized by s ep me hod)
o de e mine wha ac o s could p edic he isk o ha ing Me S. We obse ed ha TNF
P2 emained as a p o ec i e a iable; wi h a educ ion o 23% o p obabili y o being
Me S pe uni o DNA me hyla ion inc eased (Table 6).
Table 6. Logis ic eg ession analysis: isk o Me S. Va iables ha showed a signi ican
associa ion wi h Me S V a he co ela ion analyses such as age, gende , PPARA P2, SCD P6,
TNF P2 and P5 we e in oduced as independen a iables. A ha monized model in which
gende , PPARA P2 and TNF P2 was main ained was gene a ed.
Non Me s/Me S (R2=0.506-0.686)
β
P
CI 95%
Gende
5.813
0.094
0.739-45.699
PPARA P2
1.630
0.246
0.714-3.719
TNF P2
0.791
0.008
0.664-0.942
Non me abolic synd ome g oup (Non Me S); Me abolic synd ome g oup (Me S); Pe oxisome
p oli e a o -ac i a ed ecep o alpha DNA me hyla ion a posi ion 2 (PPARA P2); Tumo
nec osis ac o DNA me hyla ion a posi ion 2 (TNF P2).
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127
B
HOMA-IR (R=0.59, R2=0.35)
p
CI (95%)
Age
-0.00
0.96
-0.06-0.05
Gende
-0.71
0.32
-2.14-0.72
BMI
0.13
0.00
0.04-0.21
C3 mRNA
0.74
0.00
0.26-1.22
C3 me hyla ion
0.07
0.44
-0.12-0.28
Abb e ia ions: HOMA-IR: Homeos asis Model Assessmen o Insulin Resis ance; CI:
Con idence In e al.
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129
MANUSCRITP 4. Ch oma in Immunop ecipi a ion Imp o emen s o
he P ocessing o Small F ozen Pieces o Adipose Tissue
Cas ellano-Cas illo D. e al. PloS One. 2018;13(2):e0192314.
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130
In his sec ion we aimed o accomplish he objec i e 4. In his objec i e, we op imized
he s anda d p o ocol o ch oma in immunop ecipi a ion (ChIP) o small pieces o
ozen human adipose issue. In addi ion, we es ChIP o he his one ma k H3K4m3,
which is ela ed o ac i e p omo e s, and alida e he pe o mance o he ChIP by
analyzing gene p omo e s o ac o s usually s udied in adipose issue using qPCR.
We ha e in oduced c ucial changes o he s anda d ChIP p o ocol, imp o ing he
homogeniza ion, ixa ion and de-c osslinking s eps, allowing enough immunop ecipi ed
ma e ial o be ob ained o pe o m u he s eps, as we demons a ed by es ing
H3K4me3 modi ica ions. Thus, we ha e shown ha he use o only 100 mg o ozen
AT is enough o ChIP es s, which will help o ad ance knowledge abou epigene ic
ma ks o AT and hei signi icance o me abolic homeos asis.
The high lipid con en o he AT makes he ixa ion and subsequen s eps di icul o
wo k wi h. Adipocy es loa in he uppe laye due o hei lipid con en (Figu e 1.1),
which leads o a high loss o issue in he p ocessing. Thus, s anda d homogeniza ion
me hods (mo a and pes le) we e no able o ex ac a p ope quan i y o DNA, showing
a e y low pe o mance. In his me hod, a high quan i y o issue emained s uck o he
su aces o he pes le and mo a ha esul ed in a high issue loss, a e y low nuclei
eco e y and no ch oma in ha es . We he e o e pe o med wo o he al e na i e
me hods whe e he ixa ion and washing o he issue we e p io o he homogeniza ion
s ep. This allowed be e issue manipula ion, indeed a oiding loss o issue. We
compa ed he dounce homogenize (Figu e 1.2) wi h he ul a u ax homogenize
(Figu e 1.3).
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131
Figu e 1. Figu e shows he h ee di e en wo k lows pe o med, using he pes le and mo a
(1.1), he Dounce homogenize (1.2) o he Ul a u ax homogenize (1.3). In (1.1), he
homogeniza ion s ep was pe o med using liquid ni ogen, a e which i was ixed. A e his,
he nuclei we e pelle ed and nucleus lysis bu e was added. Once incuba ed, he sample was
shea ed and he ch oma in agmen a ion and eco e y we e checked. In he o he wo
al e na i e me hods p oposed (1.2 and 1.3), he issue was cu in small pieces (3 mm) and he
ixa ion s ep was pe o med p io o he homogeniza ion. Once homogenized, he nuclei we e
eco e ed by cen i uga ion, nucleus lysis bu e was added and he sample was shea ed and he
ch oma in agmen a ion and eco e y we e checked.
The use o he ul a u ax homogenize esul s in a highe o al DNA eco e y a e he
pu i ica ion s ep (Figu e 2).
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132
Figu e 2. The igu e shows he di e en e iciency in o al DNA eco e y be ween he Dounce
and he Ul a u ax homogenize . 100 mg o ozen adipose issue was ixed in 1%
pa a o maldehyde, homogenized ei he , using he Dounce o Ul a u ax homogenize and
shea ed o 40 cycles (30 seconds ON and 30 seconds OFF). A sample o 50 l o he
homogenized ma e ial was hen aken, and he ch oma in was de-c osslinked using he as
Chelex-100 me hod. To al DNA was ex ac ed and quan i ied by nanod op. Da a a e gi en as
means wi h e o ba s. Abb e ia ions: Dounce, Dounce homogeniza ion me hod; Ul a u ax,
ul a u ax homogeniza ion me hod. (n=6).
Once he op imal homogeniza ion me hod was es ablished, a p ope ixa ion me hod o
AT was ound. Concen a ion o o maldehyde o c osslinking DNA/p o ein is an
impo an s ep, which can a ec he shea ing o he DNA and, consequen ly, he
pe o mance o he immunop ecipi a ion (IP) and he eco e y o DNA. Fo his eason,
we ied wo di e en o maldehyde concen a ions in o de o imp o e DNA eco e y:
he classical concen a ion o 1% o maldehyde was compa ed o a lowe concen a ion
o 0.5% o maldehyde. In addi ion, we also ied di e en incuba ion imes (10, 8, 5
minu es) and empe a u es (RT o 37ºC) o ix he sample, al hough no good esul s
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133
we e ob ained o incuba ion imes longe han 5 minu es and empe a u es highe han
RT (da a no shown). 5 ml o each ixa ion solu ion we e used o ca y ou he ixa ion
s ep o 5 minu es a RT and shaking. Fu he mo e, he sonica ion s ep is highly a iable
depending on he sonica o and he e is e en mode a e a ia ion be ween di e en
de ices o he same echnology. Indeed, i is ecommendable o se up he p ope
shea ing me hod no only o each kind o issue bu also o each de ice. A he same
ime, we also de e mined he sonica ion ime o p ope ly shea he DNA using a
Bio up o sonica o a e issue ixa ion. We es ed 20, 30 and 40 cycles o 30 seconds
ON / 30 seconds OFF a high powe . We ob ained be e esul s using a low
concen a ion o 0.5% o maldehyde oge he wi h a numbe o 40 cycles o DNA
eco e y (Figu e 3A and Figu e 3B). Howe e , 1% o maldehyde hinde ed shea ing o
he ch oma in, independen ly o he numbe o sonica ion cycles.
Figu e 3. 100 mg o ozen adipose issue was ixed in ei he 1% o 0.5% o pa a o maldehyde
and hen homogenized using he Ul a u ax me hod. I was hen shea ed o 40 cycles (30
seconds ON and 30 seconds OFF), a e which a sample o 50 µl o he homogenized ma e ial
was aken, and he ch oma in was de-c osslinked using he as Chelex-100 me hod. To al DNA
was ex ac ed and quan i ied by nanod op. Fixa ion a 0.5% p esen s highe le els o DNA
eco e y (A) a e DNA pu i ica ion and a be e ch oma in shea es ed by elec opho esis in
2% aga ose gel. (B) Compa ison o he use o PBS+1% o PBS+0.5% o maldehyde in he
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134
pe o mance o DNA eco e y a e de-c osslinking and pu i ying he DNA. (n=6). Da a a e
gi en as means wi h e o ba s.
Finally, due o he small pieces and na u e o AT i sel , added o he ac ha i was
ozen, he de-c osslinking and DNA eco e y s eps may be de e minan o he success
o he IP and downs eam p ocedu es. Two me hods o ch oma in de-c osslinking we e
es ed: he s anda d me hod, which consis s o incuba ing he ch oma in a 65ºC o 5
hou s ollowed by p o einase K (PK) ea men a 55º o 1 hou ; and a as e me hod in
which ch oma in is hea ed o 100ºC du ing a sho e pe iod o ime o 10 minu es wi h
10% chelex-100 o p o ec he DNA. Once he DNA was pu i ied, he da a e ealed a
highe pe o mance o he s anda d me hod, in which he ch oma in is submi ed o a
mode a e empe a u e o a long ime (Fig 4).
Figu e 4. 100 mg o ozen adipose issue was ixed in 0.5% pa a o maldehyde and hen
homogenized using he Ul a u ax me hod. I was hen shea ed o 40 cycles (30 seconds ON
and 30 seconds OFF), a e which a sample o 50 µl o he homogenized ma e ial was aken,
and he ch oma in was de-c osslinked using ei he he as Chelex-100 me hod o a mode a e
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135
empe a u e o 5 hou s plus PK ea men . Figu e shows he de-c osslinking s ep a a mode a e
empe a u e o 5 hou s and hen a PK s ep imp o es he quan i y o DNA wi h espec o he
me hod based on he use o Chelex-100. (n=6). To al DNA was ex ac ed and quan i ied by
nanod op. Da a a e gi en as means wi h e o ba s.
The e o e, a e es ing di e en s eps du ing he egula ChIP p o ocol, se e al changes
ha e been in oduced in o de o ma ch he me hod o small ozen AT samples. The
high lipid con en in AT hinde s issue manipula ion, DNA ex ac ion and e en nucleus
elease and nucleus b eakdown. This has led o he de elopmen o specialized
ex ac ion ki s o AT, o example o RNA ex ac ion. Thus, based on ou da a in AT
manipula ion (da a no shown), we decided o inc ease he p opo ion o bu e wi h
espec o he sample quan i y compa ed o egula p ocedu es o he ollowing s eps:
ixa ion, washes a e ixa ion, cell lysis and elease o nuclei. This allowed us o deal
wi h he high lipid con en , a oiding a e y hick cell lysa e, which could hinde nucleus
elease. Fu he mo e, his allowed eco e y o a cleane nucleus pelle , imp o ing he
sonica ion and ch oma in elease. In hese s eps, we ecommend he use o glass
pipe es o emo e he liquid disca ded in each s ep since he high lipìd con en o AT
can become s uck o plas ic su aces, hinde ing manipula ion and leading o issue loss.
Mo eo e , we de e mined use o he ul a u ax homogenize as he bes me hod o
homogeniza ion, a ixing solu ion o PBS+0.5% o maldehyde a RT and he s anda d
de-c osslinking me hod as he mos sui able p ocedu es o small pieces o ozen AT.
Up o now, he use o ChIP o AT has been limi ed o big amoun s o issue, and
especially o mouse AT whe e he condi ions a e less limi ing. Thus, he imp o emen s
shown in his wo k could help esea che s s udy he p o eome-DNA in e ac ion in
human AT, which is s o ed ozen in la ge issue banks.
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136
Once he bes p ocedu e was es ablished, we applied he me hod o 100 mg o ozen
samples o human AT. The yield o he me hod a e he IP esul ed in an a e age o
almos 100 ng o DNA, enough o pe o m a pos e io high h oughpu sequencing
hanks o he high esolu ion o he la es nex gene a ion sequencing me hods. On he
o he hand, in o de o imp o e he pe o mance and DNA eco e y, we encou age
o he s o pe o m ChIP expe imen s in small ounds o samples
Al hough we ha e p o ided an imp o ed me hod o wo k wi h small ozen pieces o
AT, we needed o con i m he co ec assessmen o he IP. We alida ed ou ChIP
p o ocol in mouse and human AT by es ing H3K4me3 modi ica ions, a ma k o ac i e
p omo e egions. By qPCR we iden i ied H3K4me3 en ichmen on se e al p omo e s
o genes usually exp essed in AT, such as PPARG, SCD, LPL, LEP, SREBF2, as well
as a sequence 30 kb be o e PPARG TSS (T ansc ip ion S a Si e) in mice (PPARG Ou )
and a sequence 35 kb be o e SCD TSS (SCD Ou ) o humans, bo h as con ol egions.
We ob ained a high pe cen age o en ichmen in bo h mice and humans (Figu e 5A and
Figu e 5B espec i ely) o genes usually exp essed in AT, like SCD, PPARG, LPL o
SREBF2, while con ol egions p esen ed esidual exp essions. The p esence o
H3K4m3 a hese p omo e s has al eady been demons a ed in se e al issues and cell
lines (ENCODE p ojec ), bu o he bes o ou knowledge, no esul s a e a ailable in
whi e AT. Ne e heless, hese gene exp essions a e usually assessed in AT, which could
ag ee wi h he high pe cen age o DNA immunop ecipi a ion obse ed in hese
p omo e genes o H3K4m3, a his one associa ed wi h ac i e genes.
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143
(E2F1); Lipop o ein Lipase (LPL); S e ol egula o y elemen -binding ac o 2 (SREBF2);
S ea oyl-CoA desa u ase 1 (SCD1); Pe oxisome p oli e a o -ac i a ed ecep o gamma
(PPARG); In e leukin 6 (IL6); Tumo nec osis ac o (TNF).
Acco dingly, associa ion analysis o he H3K4me3 ma k in he s udied genes wi h he
measu ed clinical a iables showed us a posi i e co ela ion o he H3K4me3 ma k a
E2F1, LEP, LPL, SREBF2, SCD1, PPARG, IL6 and TNF p omo e s wi h he BMI,
HOMA-IR and insulin le els (Table 2). Mo eo e , he e was a posi i e co ela ion
be ween glucose and H3K4me3 ma k en ichmen a he p omo e o SCD1, PPARG,
E2F1 and IL6 (Table 2). We also obse ed a posi i e co ela ion be ween he
H3K4me3 ma k a E2F1, SREBF2 and SCD p omo e s wi h he numbe o me abolic
synd ome (Me S) componen s (Me S Va ) p esen s in he subjec .
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144
Table 2. Spea man co ela ion analysis be ween H3K4me3 ma k en ichmen a he s udy gene p omo e s and he an h opome ic and biochemical a iables. *
and ** mean p<0.05 and p<0.01 espec i ely.
H3K4me3
en ichmen
Age
BMI
Glucose
Insulin
HOMA-IR
Tg
Chol
HDL-C
LDL-C
SBP
DBP
Me S Va
E2F1
-0.214
0.530**
0.552**
0.573**
0.594**
-0.01
-0.256
-0.163
-0.257
0.123
0.072
0.448*
LEP
-0.148
0.364
0.361
0.348
0.367
0.044
-0.133
-0.12
-0.143
0.075
0.006
0.279
LPL
-0.168
0.430*
0.395*
0.437*
0.463*
-0.008
-0.208
-0.141
-0.198
0.154
0.064
0.333
SREBF2
-0.236
0.467*
0.442*
0.403*
0.441*
-0.048
-0.178
-0.232
-0.113
0.088
0.062
0.463*
SCD
-0.242
0.528**
0.513**
0.529**
0.548**
-0.034
-0.214
-0.186
-0.213
0.157
0.071
0.420*
PPARG
-0.243
0.488**
0.399*
0.460*
0.479**
-0.051
-0.263
-0.212
-0.246
0.073
0.038
0.369
IL6
-0.131
0.430*
0.497**
0.472*
0.501**
0.062
-0.094
-0.15
-0.065
0.191
0.047
0.327
TNF
0.009
0.23
0.379*
0.295
0.305
-0.051
-0.093
-0.008
-0.105
0.085
0.056
0.163
Abb e ia ions: E2F ansc ip ion ac o 1 (E2F1); Lep in (LEP); Lipop o ein Lipase (LPL); S e ol egula o y elemen -binding ac o 2 (SREBF2); S ea oyl-
CoA desa u ase 1 (SCD1); Pe oxisome p oli e a o -ac i a ed ecep o gamma (PPARG); In e leukin 6 (IL6); Tumo nec osis ac o (TNF); Body mass index
(BMI); Homeos a ic model assessmen o insulin esis ance (HOMA-IR); T iglyce ides (Tg); To al choles e ol (Chol); High-densi y lipop o ein choles e ol
(HDL-C); Low-densi y lipop o ein choles e ol (LDL-C); Sys olic blood p essu e (SBP); Dias olic blood p essu e (DBP); Numbe o Me S a iables (Me S
Va ).
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145
Gene exp ession le els
Le els o gene exp ession in he s udied genes a e despic ed in Figu e 2. Wi h espec
o he Lean NG g oup, LPL, SCD and PPARG mRNA le els we e lowe in he MO PD
g oup, whils highe mRNA le els we e desc ibed o IL6 and TNF genes.
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146
Figu e 2. G oup compa isons o he ela i e mRNA le els o he s udy genes. Di e en le e s
mean signi ican di e ences a p<0.05 acco ding o K uskall-Wallis and Mann-Wi hney U-Tes .
Abb e ia ions: Lean No moglycemic (Lean NG); Mo bid obese no moglycemic (MO NG);
Mo bid obese p ediabe ic (MO PD); E2F ansc ip ion ac o 1 (E2F1); Lipop o ein Lipase
(LPL); S e ol egula o y elemen -binding ac o 2 (SREBF2); S ea oyl-CoA desa u ase 1
(SCD1); Pe oxisome p oli e a o -ac i a ed ecep o gamma (PPARG); In e leukin 6 (IL6);
Tumo nec osis ac o (TNF).
Co ela ion analyses we e in line wi h he exp ession esul s. Thus, LEP, IL6 and TNF
mRNA le els we e posi i ely associa ed o BMI, while LPL, SCD and PPARG mRNA
le els dec eased in line wi h BMI (Table 3). On he o he hand, HOMA-IR co ela ed
wi h LEP, IL6 and TNF mRNA in a posi i e way, and nega i ely wi h SREBF2 and
SCD (Table 3).
Rega ding he es o measu ed a iables, posi i e associa ions we e desc ibed be ween
HDL-C and LPL, SCD and PPARG gene exp essions. In e es ingly, E2F1 mRNA le els
we e nega i ely associa ed wi h o al choles e ol (Chol), HDL-C and LDL-C (Table 3).
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Table 3. Spea man co ela ion analysis be ween he ela i e mRNA le els a he s udy genes and he an h opome ic and biochemical a iables. * and **
mean p<0.05 and p<0.01 espec i ely.
Rela i e
mRNA
Age
BMI
Glucose
Insulin
HOMA-IR
Tg
Chol
HDL-C
LDL-C
SBP
DBP
Me S Va
E2F1
-0.256
0.359
0.116
0.194
0.19
-0.151
-0.559**
-0.407*
-0.534**
-0.144
0.097
0.284
LEP
-0.321
0.522**
0.334
0.673**
0.683**
0.179
-0.213
-0.308
-0.093
0.04
-0.095
0.533**
LPL
0.103
-0.500**
-0.295
-0.33
-0.327
-0.189
0.31
0.516**
0.203
0.008
-0.102
-0.454*
SREBF2
0.088
-0.258
-0.178
-0.391*
-0.409*
-0.238
-0.082
-0.024
-0.069
-0.209
-0.238
-0.373
SCD
0.375*
-0.681**
-0.319
-0.526**
-0.525**
-0.124
0.381*
0.555**
0.277
0.054
-0.165
-0.597**
PPARG
0.061
-0.408*
-0.214
-0.216
-0.204
-0.112
0.221
0.371*
0.182
0.097
0.161
-0.28
IL6
-0.291
0.729**
0.486*
0.571**
0.590**
0.036
-0.285
-0.223
-0.322
-0.025
0.144
0.533**
TNF
-0.298
0.679**
0.322
0.594**
0.612**
0.024
-0.263
-0.175
-0.335
0.048
-0.108
0.444*
E2F ansc ip ion ac o 1 (E2F1); Lep in (LEP); Lipop o ein Lipase (LPL); S e ol egula o y elemen -binding ac o 2 (SREBF2); S ea oyl-CoA desa u ase 1
(SCD1); Pe oxisome p oli e a o -ac i a ed ecep o gamma (PPARG); In e leukin 6 (IL6); Tumo nec osis ac o (TNF); Body mass index (BMI);
Homeos a ic model assessmen o insulin esis ance (HOMA-IR); T iglyce ides (Tg); To al choles e ol (Chol); High-densi y lipop o ein choles e ol (HDL-C);
Low-densi y lipop o ein choles e ol (LDL-C); Sys olic blood p essu e (SBP); Dias olic blood p essu e (DBP); Numbe o Me S a iables (Me S Va ).
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148
Rela ionship be ween H3K4me3 ma k le els and gene exp ession le els
In o de o analyze whe he he p omo e H3K4me3 le els could be ela ed o gene
exp ession we pe o med spea man’s co ela ion analysis in he whole popula ion
be ween he mRNA le els and H3K4me3 en ichmen a each gene. We did no obse e
any signi ican associa ion be ween he p omo e H3K4me3 le els and he mRNA
le els o any gene excep o E2F1, in which a posi i e co ela ion was obse ed
( =0.422, p=0.04).
Mul i a ia e models
In addi ion, a ha monized lineal eg ession analyses showed ha BMI was hea ily
explained by H3K4me3 en ichmen le els a he p omo e o E2F1 and LPL, and by he
mRNA le els o LEP and SCD (Table 4). In his model, hese ou a iables could
explain up o 83% o he BMI a iabili y p esen in ou s udied popula ion.
Table 4. Ha monized lineal eg ession analysis wi h BMI as dependen a iable, which was
co ec ed by age and sex. H3K4me3 en ichmen a gene p omo e s and gene exp ession o
genes ha showed signi ican associa ion in he spea man co ela ion analysis we e in oduced
in he model,.
BMI (R=0.91, R2=0.83)
Be a
p
95% CI
E2F1 H3K4me3
0.979
0.001
0.844 o 2.922
LPL H3K4me3
-0.813
0.003
-3.640 o -0.840
LEP mRNA
0.344
0.002
38.32 o 152.97
SCD mRNA
-0.516
0.000
-3.650 o -1.459
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149
Abb e ia ions: Body mass index (BMI); E2F ansc ip ion ac o 1 (E2F1); Lipop o ein Lipase
(LPL); Lep in (LEP); S ea oyl-CoA desa u ase 1 (SCD1).
On he o he hand, when he s udied a iable is HOMA-IR, a ha monized lineal
eg ession showed ha he H3K4me3 en ichmen a he p omo e o SCD and IL6,
oge he wi h he mRNA le els o LEP and SCD could explain a 79% o he a ia ion
obse ed in he HOMA-IR (Table 5).
Table 5. Ha monized lineal eg ession analysis wi h HOMA-IR as dependen a iable, which
was co ec ed by age and sex. H3K4me3 en ichmen a gene p omo e s and gene exp ession o
genes ha showed signi ican associa ion in he spea man co ela ion analysis we e in oduced
in he model,.
HOMA-IR (R=0.89, R2=0.79)
Be a
p
95% CI
Gende
-0.259
0.047
-3.598 o -0.027
SCD H3K4me3
0.792
0.016
0.049 o 0.417
IL6 H3K4me3
-0.666
0.030
-1.769 o -0.105
LEP mRNA
0.564
0.000
16.60 o 44.82
SCD mRNA
-0.261
0.065
-0.541 o 0.018
Homeos a ic model assessmen o insulin esis ance (HOMA-IR); S ea oyl-CoA desa u ase 1
(SCD1); In e leukin 6 (IL6); Lep in (LEP).
Resul s
151
MANUSCRIPT 6. Adipose Tissue In lamma ion and VDR Exp ession
and Me hyla ion in Colo ec al Cance
Cas ellano-Cas illo D. e al. Clinical Epigene ics. 2018;10:60.
Resul s
152
The objec i e 6 was accomplished in his sec ion. The aim o his s udy was o explo e
he ela ionship be ween se um 25-hyd oxy i amin D (25(OH)D), adipose issue gene
exp ession o VD ecep o (VDR), p o-in lamma o y ma ke s and he epigene ic ac o
DNA me hyl ans e ase 3a (DNMT3A) as well as VDR and NFκB1 p omo e s
me hyla ion in subjec s wi h colo ec al cance (CRC) and wi ou h CRC (Con ol).
Blood and isce al adipose issue om 57 CRC and 50 heal hy con ol subjec s we e
collec ed. mRNA was measu ed by qPCR using Taqman echnology while bisul i e
ea ed DNA was py osequensed using he Py oma kQ96 echnology in o de o analyze
DNA me hyla ion. P o ein le els we e measu ed by Wes e n-blo .
An h opome ic and biochemical a iables
Table 1 shows he biochemical and an h opome ic cha ac e is ics o he s udy g oups.
The e we e no di e ences in age, BMI o gende be ween he con ol and CRC g oups.
The CRC g oup had lowe le els o insulin, o al choles e ol, HDL-C and LDL-C han
he con ol g oup. In con as , he CRC g oup p esen ed highe le els o plasma
iglyce ides when compa ed wi h he con ol g oup.
Table 1. An h opome ic and biochemical a iables o he s udy g oups
Con ol
(n=57)
CRC
(n=50)
Age (yea s)
64.94±8.84
68.035±8.43
Male/Female (%)*
68/32
45/55
BMI (kg/m2)
28.51±4.21
27.61±3.91
Wais (cm)
96.55±11.64
97±12.74
Glucose (mg/dl)
111.72±28.77
125.035±46.87