Supplementary material 2 from: Cai Y, Yin A (2025) The first mitogenomes of the subfamily Epipleminae (Lepidoptera, Uraniidae) and phylogenetic analysis of Macroheterocera. ZooKeys 1255: 343-363. https://doi.org/10.3897/zookeys.1255.164711

1 Table S1. Partitioning scheme and corresponding substitution models determined by ModelFinder for the PCG123R dataset in the ML analysis. The p1, p2 and p3 denote the first, second and third codon positions of each PCG, respectively. Partitions Models Data partitions P1 GTR+F+I+G4 atp6p1, cytbp1 P2 GTR+F+I+G4 atp6p2, cox1p2, cox2p2, P3 K3Pu+F+I+G4 atp6p3, atp8p3, cox1p3, cox2p3, cox3p3, nd2p3, nd3p3, nd6p3 P4 TN+F+I+G4 atp8p1 P5 TPM3u+F+I+G4 atp8p2, nd6p2 P6 GTR+F+I+G4 cox1p1, cox2p1, cox3p1 P7 TVM+F+I+G4 cox3p2, cytbp2, nd2p2, nd3p2 P8 TIM2+F+I+G4 cytbp3 P9 TVM+F+I+G4 nd1p1, nd4p1, nd4lp1, nd5p1 P10 GTR+F+I+G4 nd1p2, nd4p2, nd4lp2, nd5p2 P11 TIM+F+I+G4 nd1p3, nd4p3 P12 GTR+F+I+G4 nd2p1, nd3p1 P13 TPM2u+F+G4 nd4lp3 P14 TIM2+F+I+G4 nd5p3 P15 TIM2+F+I+G4 nd6p1 P16 GTR+F+I+G4 rrnS P17 GTR+F+I+G4 rrnL 2 Table S2. The partitioning scheme and corresponding substitution models determined by ModelFinder for the PCG123R dataset in the BI analysis. The p1, p2 and p3 denote the first, second and third codon positions of each PCG, respectively. Partitions Models Data partitions P1 GTR+F+I+G4 nd2p1, nd3p1 P2 GTR+F+I+G4 nd2p2, cox3p2, cytbp2, nd3p2, atp6p2 P3 GTR+F+G4 nd2p3 P4 GTR+F+I+G4 cox3p1, cox2p1, cox1p1 P5 GTR+F+G4 cox3p3, atp6p3 P6 GTR+F+I+G4 atp8p1 P7 GTR+F+I+G4 atp8p2, nd6p2 P8 GTR+F+I+G4 atp8p3, cox1p3, nd3p3, nd6p3 P9 GTR+F+I+G4 cox2p2, cox1p2 P10 GTR+F+G4 cox2p3 P11 GTR+F+I+G4 rrnS P12 GTR+F+I+G4 cytbp1, atp6p1 P13 GTR+F+I+G4 cytbp3 P14 GTR+F+I+G4 nd4lp1, nd1p1, nd4p1, nd5p1 P15 GTR+F+I+G4 nd4lp2, nd1p2, nd4p2, nd5p2 P16 HKY+F+G4 nd4lp3 P17 GTR+F+G4 nd1p3, nd5p3 P18 GTR+F+I+G4 nd4p3 P19 GTR+F+I+G4 nd6p1 P20 GTR+F+I+G4 rrnL 3 Table S3. The partitioning scheme and corresponding substitution models determined by ModelFinder for the PCG123 dataset in the ML analysis. The p1, p2 and p3 denote the first, second and third codon positions of each PCG, respectively. Partitions Models Data partitions P1 GTR+F+I+G4 atp6p1, cytbp1, nd3p1 P2 GTR+F+I+G4 atp6p2, cox1p2, cox2p2 P3 GTR+F+G4 atp6p3, cox2p3, cox3p3 P4 TN+F+I+G4 atp8p1 P5 TPM3u+F+I+G4 atp8p2, nd6p2 P6 GTR+F+G4 atp8p3 P7 GTR+F+I+G4 cox1p1, cox2p1, cox3p1 P8 K3Pu+F+I+G4 cox1p3, nd3p3, nd6p3 P9 TVM+F+I+G4 cox3p2, cytbp2, nd2p2, nd3p2 P10 TIM2+F+I+G4 cytbp3 P11 TVM+F+I+G4 nd1p1, nd4p1, nd4lp1, nd5p1 P12 GTR+F+I+G4 nd1p2, nd4p2, nd4lp2, nd5p2 P13 K3Pu+F+I+G4 nd1p3, nd4p3 P14 TIM2+F+I+G4 nd2p1 P15 TIM+F+I+G4 nd2p3 P16 TPM2u+F+G4 nd4lp3 P17 TIM2+F+I+G4 nd5p3 P18 TIM2+F+G4 nd6p1 4 Table S4. The partitioning scheme and corresponding substitution models determined by ModelFinder for the PCG123 dataset in the BI analysis. The p1, p2 and p3 denote the first, second and third codon positions of each PCG, respectively. Partitions Models Data partitions P1 GTR+F+I+G4 cox1p1, cox3p1, cox2p1 P2 GTR+F+I+G4 cox1p2, cox2p2 P3 GTR+F+I+G4 cox1p3, nd6p3, nd3p3, atp8p3 P4 GTR+F+I+G4 nd4p1, nd5p1, nd4lp1, nd1p1 P5 GTR+F+I+G4 nd4p2, nd5p2, nd4lp2, nd1p2 P6 HKY+F+G4 nd4p3, nd4lp3 P7 GTR+F+I+G4 cox3p2, nd2p2, nd3p2, atp6p2, cytbp2 P8 GTR+F+G4 cox3p3, cox2p3 P9 GTR+F+G4 nd5p3, nd1p3 P10 GTR+F+I+G4 nd2p1 P11 HKY+F+I+G4 nd2p3, atp6p3, cytbp3 P12 GTR+F+G4 nd6p1 P13 GTR+F+I+G4 nd6p2, atp8p2 P14 GTR+F+I+G4 nd3p1, atp6p1, cytbp1 P15 GTR+F+I+G4 atp8p1 5 Table S5. The partitioning scheme and corresponding substitution models determined by ModelFinder for the PCG12R dataset in the ML analysis. The p1 and p2 denote the first and second codon positions of each PCG, respectively. Partitions Models Data partitions P1 GTR+F+I+G4 atp6p1, cox2p1, cytbp1 P2 TVM+F+I+G4 atp6p2, cox3p2, cytbp2, nd2p2, nd3p2 P3 TIM2+F+I+G4 atp8p1, nd6p1 P4 TIM2+F+I+G4 atp8p2, nd3p1 P5 GTR+F+I+G4 cox1p1 P6 TVM+F+I+G4 cox1p2, cox2p2 P7 GTR+F+I+G4 cox3p1 P8 GTR+F+I+G4 nd1p1, nd4p1, nd4lp1, nd5p1, rrnS P9 GTR+F+I+G4 nd1p2, nd4p2, nd4lp2, nd5p2 P10 TIM2+F+I+G4 nd2p1 P11 TPM3u+F+I+G4 nd6p2 P12 GTR+F+I+G4 rrnL 6 Table S6. The partitioning scheme and corresponding substitution models determined by ModelFinder for the PCG12R dataset in the BI analysis. The p1 and p2 denote the first and second codon positions of each PCG, respectively. Partitions Models Data partitions P1 GTR+F+I+G4 cox1p1 P2 GTR+F+I+G4 cox1p2, cox2p2 P3 GTR+F+I+G4 nd4p1, nd4lp1, nd5p1, nd1p1, rrnS P4 GTR+F+I+G4 nd4p2, nd4lp2, nd5p2, nd1p2 P5 GTR+F+I+G4 nd2p1 P6 GTR+F+I+G4 nd2p2, cytbp2, atp6p2, cox3p2, nd3p2 P7 GTR+F+I+G4 atp8p1, nd6p1 P8 GTR+F+I+G4 atp8p2, nd3p1 P9 GTR+F+I+G4 cytbp1, atp6p1 P10 GTR+F+I+G4 rrnL P11 GTR+F+I+G4 cox2p1 P12 GTR+F+I+G4 cox3p1 P13 GTR+F+G4 nd6p2 7 Table S7. The partitioning scheme and corresponding substitution models determined by ModelFinder for the PCG12 dataset in the ML analysis. The p1 and p2 denote the first and second codon positions of each PCG, respectively. Partitions Models Data partitions P1 GTR+F+I+G4 atp6p1, cytbp1 P2 TVM+F+I+G4 atp6p2, cox2p2, cox3p2, cytbp2 P3 TIM2+F+I+G4 atp8p1, nd6p1 P4 TIM2+F+I+G4 atp8p2, nd2p1 P5 TIM2+F+I+G4 cox1p1 P6 TVM+F+I+G4 cox1p2 P7 TIM2+F+I+G4 cox2p1 P8 GTR+F+I+G4 cox3p1 P9 TVM+F+I+G4 nd1p1, nd4lp1, nd5p1 P10 GTR+F+I+G4 nd1p2, nd4p2, nd4lp2, nd5p2 P11 TVM+F+I+G4 nd2p2, nd3p2 P12 GTR+F+I+G4 nd3p1 P13 K3Pu+F+I+G4 nd4p1 P14 TPM3u+F+I+G4 nd6p2 8 Table S8. The partitioning scheme and corresponding substitution models determined by ModelFinder for the PCG12 dataset in the BI analysis. The p1 and p2 denote the first and second codon positions of each PCG, respectively. Partitions Models Data partitions P1 GTR+F+I+G4 atp8p1, nd6p1 P2 GTR+F+I+G4 atp8p2, nd2p1 P3 GTR+F+I+G4 cox1p1 P4 GTR+F+I+G4 cox1p2 P5 GTR+F+I+G4 nd2p2, nd3p2, cox3p2, cytbp2, atp6p2 P6 GTR+F+I+G4 nd3p1 P7 GTR+F+I+G4 nd1p1, nd5p1, nd4lp1 P8 GTR+F+I+G4 nd1p2, nd4p2, nd5p2, nd4lp2 P9 GTR+F+G4 nd6p2 P10 GTR+F+I+G4 cox3p1 P11 GTR+F+I+G4 cytbp1, atp6p1 P12 GTR+F+I+G4 nd4p1 P13 GTR+F+I+G4 cox2p1 P14 GTR+F+I+G4 cox2p2 9 Table S9. The partitioning scheme and corresponding substitution models determined by ModelFinder for the AA dataset in the ML analysis. Partitions Models Data partitions P1 mtART+F+I+G4 atp6, nd2, nd3 P2 Q.plant+F+G4 atp8 P3 mtART+I+G4 cox1 P4 mtInv+I+G4 cox2, cox3, cytb P5 mtART+F+I+G4 nd1, nd4l P6 mtZOA+F+I+G4 nd4, nd5 P7 mtART+F+G4 nd6