The Power of Sharing: Open Data in Bio-image Analysis
Abstract
The material supports the panel discussion about open data sharing with stories and info from the panelists. C.W. and R.M. are funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure –NFDI46/1 – 501864659
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The Power of Sharing: Open Data in Bio-image Analysis Panel Discussion Info and references 10.5281/zenodo.17429285
Dr. Cornelia Wetzker
Panel discussion The Power of Sharing: Open Data in Bio-image Analysis Cornelia Wetzker, October 24 2025 A consortium of the German Nationale Forschungsdateninfrastruktur (NFDI) e.V. for research data management in bio-imaging and bio-image analysis funded by DFG The content of this slide is shared under the terms of the Creative Commons Attribution License (CC-By 4.0, creativecommons.org/licenses/by/4.0) The Power of Sharing: supported by the NFDI4BIOIMAGE consortium and its data stewards •Support the bio-imaging community in RDM topics via our helpdesk service •Guide data handling, metadata annotations, data upload to community repositories (such as BioImage Archive, Image Data Resource and others) •Develop tools and workflows for the community •Connect to experts in the consortium and beyond •Share training materials and offer trainings modified from ‘Mind the Gap’ and ‘Common language’ by Henning Falk, ©2024 NumFOCUS, used under a CC BY 4.0 license. https://zenodo.org/records/14762483
Panel discussion The Power of Sharing: Open Data in Bio-image Analysis Cornelia Wetzker, October 24 2025 A consortium of the German Nationale Forschungsdateninfrastruktur (NFDI) e.V. for research data management in bio-imaging and bio-image analysis funded by DFG The content of this slide is shared under the terms of the Creative Commons Attribution License (CC-By 4.0, creativecommons.org/licenses/by/4.0) The Power of Sharing: in a collaborative research project CODE shared on GitHub (exchange with community) BIO-IMAGE SOFTWARE PLUGIN (napari-flim-phasor-plotter) for raw data import, conversion and visualization was developed (feedback from community) Imaging project phases BIO-IMAGES explored collaboratively within project on management and annotation platform (later made publicly accessible) BIO-IMAGES shared in bioimaging-specific community archives MANUSCRIPT shared publicly prior to submission to journals SCIENTIFIC PUBLICATION openly accessible Documentation of the plugin
Dr. Frauke Beyer
Your (double) pseudonymized personal characteristics and blood and stool sample data may also be submitted to research data platforms/repositories on the Internet (well-known platforms include Open Science Framework (www.osf.io), Openneuro, NITRC, HumanConnectomProject, and Open Science Foundation). [...]. Once placed on the research data platforms, [...] From this point on, it is no longer possible to control the use of this data [...].
Michaela Unger
Data quality & digitization Data heterogeneity & bias Data regulation & gatekeeping Method reproducibility & sharing Data standardization & FAIR data Open benchmarks & repositories Collaborative governance Federated learning & Synthetic Data Open (Data) Science and AI