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[SaxFDMTagung2025] Share your Bioimage Data with the World

Author: Wetzker, Cornelia; Massei, Riccardo; Schlierf, Michael
Publisher: Zenodo
DOI: 10.5281/zenodo.17659149
Source: https://zenodo.org/records/17659149/files/saxFDM2025_share-bioimage-data-with-the-world_Conni-Wetzker.pdf
Sha e you bioimage da a wi h he wo ld
Co nelia We zke
Cen e o Molecula and Cellula Bioenginee ing,
Technische Uni e si ä D esden
0000-0002-8367-5163
Michael Schlie
B CUBE - Cen e o Molecula Bioenginee ing,
Technische Uni e si ä D esden
0000-0002-6209-2364
Ricca do Massei
Umwel -Fo schungs-Zen um Leipzig
0000-0003-2104-9519
SAMPLE
PREPARATION IMAGING DATA PROCESSING COLLABORATIVE DATA
EXPLORATION DATA SHARING
and REUSE
BIOIMAGE DATA
ANALYSIS
PROJECT
PLANNING
NEXT GENERATION FILE FORMATS
Use open s anda dized file o ma s wi h ex ensi e me ada a
BIOIMAGE MANAGEMENT PLATFORMS
Use ools o EASY and COLLABORATIVE ACCESS, ANNOTATION and
VISUALIZATION o you da a
da ase om
publicly a ailable
da a collec ed a
T ends in Mic os-
copy 2025
benefi s o you
sha ed access o da a in esea ch eams
enhanced collabo a ion
benefi s o all
inc eased scien ific ou pu
THE DATA STEWARDSHIP TEAM
COMMUNITY SUPPORT
we p o ide suppo on bioimage da a handling such as
me ada a anno a ions
da a upload o communi y eposi o ies
bioimage da a managemen ( ools)
linkage o u he expe imen al da a
we connec o expe s in he field
we collabo a e ia communi y-use-cases
we de elop ools and wo kflows o he communi y
we will sha e aining ma e ials and offe ainings
we offe suppo ia a helpdesk
each us wi h ques ions and eedback ia
[email p o ec ed] o
o um.image.sc
Mohsen
Ahmadi
G ei swald
Vanessa
Fuchs
Düsseldo
Ksenia
K ooß
Düsseldo
Ricca do
Massei
Leipzig
Maximilian
Mülle
Kons anz
Jens
Wend
Müns e
Co nelia
We zke
D esden
The wo k o he Ge man conso ium NFDI4BIOIMAGE is unded by he
Deu sche Fo schungsgemeinscha (DFG g an numbe NFDI 46/1,
p ojec numbe 501864659).
The used ma e ials a e all sha ed unde a CC-BY 4.0 license
(c ea i ecommons.o g/licenses/by/4.0):
'Monoli hic- s-chunked' by Henning Falk, ©2022 NumFOCUS, h ps://zenodo.o g/
eco ds/7037679.
The con en o his pos e is sha ed unde he
e ms o he C ea i e Commons A ibu ion
License (CC-BY 4.0, c ea i ecommons.o g/
licenses/by/4.0)
This pos e is sha ed on zenodo unde a CC-BY 4.0 license
(c ea i ecommons.o g/licenses/by/4.0): 10.5281/zenodo.17659149
PUBLIC DISCIPLINE-SPECIFIC ARCHIVES o ANNOTATED BIOIMAGE DATA
SHARE you DATA wi h he wo ld, no jus summa ies o i !
da abase o bioimage da ase s including isualiza ion o da a in nex -
gene a ion file o ma s
Image Da a Resou ce
benefi s o you
inc ease o isibili y and wo ship o you wo k
benefi s o all
inc ease o (in e disciplina y) scien ific ou pu
economiza ion o esou ces by euse and educed edundancy
inc ease o a ailabili y o bioimage da a
OMERO-based bioimage da a a chi e including mul imodal
expe imen s wi h ex ensi e me ada a