Thinking da a managemen
on di e en scales
Susanne Kunis
These slides can be eused unde he CC BY-SA 4.0 license unless men ioned o he wise
Resea ch Da a Managemen
•Logis ical necessi y
•Ensu es In eg i y, ep oducibili y and ans e abili y
•P o ec s da a loss
•Fos e s collabo a ion
•P o ides anspa ency
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
OPTIMIZEDMANAGEDDEVELOPMENTBASICINITIAL
S a us:
Da a alue le el:
In e ope abili y:
Managemen :
Da a silo le el:
01 02 03 04 05
„I I wan o sha e da a, I
coo dina e i di ec ly wi h my
colleague”
„ I ind ha I can easily
disco e , access, combine
and publish da a".
INTERNATIONAL
INDIVIDUAL
Diso ganised, ad hoc Deploy in e domain c osswalks
Di e en da a s uc u es,
subjec i e documen a ion;
unnecessa y da a duplica ion,
ans e , con e sion; no cen al
da a s o age and access
in e ace; no objec i e/s a egy
Da a a e ich on con ex ( ull
seman ic);
S anda dised API; ha monized
and in e ope able da a;
cohe ence in o ma and con ex
local
single use
low
Asse o answe u u e ques ions
high
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
Impo an spokes in he wheel
Raise awa eness o esea ch da a
managemen impo ance;
Teaching da a managemen echnics
and ools
Suppo and cus omized
solu ions o speci ic p oblems
in he managemen o esea ch
da a
Technical in as uc u e and ela ed
se ices ha suppo esea che in
da a managemen h oughou he
esea ch cycle
Ensu e quali y, add me ada a,
and ensu e compliance wi h
s anda ds and policies.
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
Impo an spokes in he wheel
Da a s anda ds a e necessa y o b eak down da a silos
and c ea e in e ope abili y and cohe ence. They ensu e
ha da a e ain hei alue and meaning and a e usable,
consis en and accu a e.
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
Raise awa eness o esea ch da a
managemen impo ance;
Teaching da a managemen echnics
and ools
Suppo and cus omized
solu ions o speci ic p oblems
in he managemen o esea ch
da a
Technical in as uc u e and ela ed
se ices ha suppo esea che in
da a managemen h oughou he
esea ch cycle
Ensu e quali y, add me ada a,
and ensu e compliance wi h
s anda ds and policies.
In eg a ion o da a managemen
in an exis ing ecosys em
Depa men Biology
Resea ch
g oups
19
•Animal Physiology
•Beha iou al Biology
•Bioanaly ical Chemis y
•Biochemis y
•Biodi e si y and Landscape
Ecology
•Biology Didac ics
•Biophysics
•Bo any
•Cellula Communica ion
•Ecology
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
•Gene ics
•Mic obiology
•Molecula Cell Biology
•Molecula Cell Biophysics
•Molecula In ec ion Biology
•Neu obiology
•Plan Physiology
•S uc u al Biology
•Zoology
Depa men Biology
Resea ch
g oups
Facili y & Se ice
iBiOs
19
12 Ligh Mic oscopy
6 Elec on Mic oscopy
5 Cy ome y & FACS
Mass
Spec ome y
Del aVision Leica SP5 La ice
Ligh -Shee
Olympus
FV 1000
Olympus
FV 3000
Olympus
TIRF 1-LINE
Zeiss LSM
510
Zeiss 880
Ai yScan
Zeiss
Spinning Disk
Olympus
TIRF 3-LINE
Olympus
TIRF 4-LINE
FRAP
Olympus
TIRF 4-LINE
PAINT
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
Depa men Biology
Resea ch
g oups
Facili y & Se ice
iBiOs
19
Mass
Spec ome y
Resea ch Cen e
CellNanOs
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
…
Analysis
wo ks a ions
Resea ch g oup
speci ic se e
Resea ch g oup membe
and desk op sys em
Mic oscopy
wo ks a ions
Communi y/Ex e nal
Collabo a o s
Cen al OMERO eposi o y
-> Linking o di e en da a ypes
Ecosys em 2022
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
Pa s o g aphics om Au o : Seobili y - Lizenz: CC BY-SA 4.0
…
Analysis
wo ks a ions
Resea ch g oup
speci ic se e
Resea ch g oup membe
and desk op sys em
Mic oscopy
wo ks a ions
Communi y/Ex e nal
Collabo a o s
Cen al OMERO & ELN ins ance
-> Linking o di e en da a ypes
Ecosys em 2023
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
Pa s o g aphics om Au o : Seobili y - Lizenz: CC BY-SA 4.0
DEVELOPMENTBASICINITIAL
S a us:
Da a alue le el:
In e ope abili y:
Managemen :
Da a silo le el:
01 02 03
„I I wan o sha e da a, I
coo dina e i di ec ly wi h my
colleague”
„My p ojec /g oup has ag ee o
use a speci ic pla o m o da a
managemen “
„ I should manage da a and
s i e o use app op ia e
s anda ds and ools.”
INSTITUTIONAL
PROJECT/GROUP
INDIVIDUAL
Change managemen and con inious imp o emen s
Diso ganised, ad hoc Deploy basic s uc u es and ools Deploy s anda ds
Di e en da a s uc u es,
subjec i e documen a ion;
unnecessa y da a duplica ion,
ans e , con e sion; no cen al
da a s o age and access
in e ace; no objec i e/s a egy
Reo ganisa ion, de ini ion o
esponsibili ies, ans e o
knowledge; de ini ion,
es ablishmen , de elopmen and
documen a ion o managemen
and exchange p ocesses;
applica ion o me ada a o key
da a se s.
P ocesses a e s anda dised and
in eg a ed;T ainingon s anda ds;
ich me ada a
local wo king g oup local in as uc u e
single use
low
Resou ce o alida e decisions
middle
single use
low
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
Wha abou he o he s…
2017 PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
2019
•Open o all
•>20 acili ies in ol ed
•Exchange o expe ience
and knowledge
ans e in e ms o da a
managemen
RDM4mic
“Resea ch Da a Managemen o Mic oscopy”
2017 PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
2019
I3D:bio
In o ma ion In as uc u e o BioImage Da a
2017 2021
Man powe o implemen he needs
o ools, suppo and
aining wi h ocus on OMERO and
ligh mic oscopy
2022-2024
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
MANAGEDDEVELOPMENTBASICINITIAL
S a us:
Da a alue le el:
In e ope abili y:
Managemen :
Da a silo le el:
01 02 03 04
„I I wan o sha e da a, I
coo dina e i di ec ly wi h my
colleague”
„My p ojec /g oup has ag ee o
use a speci ic pla o m o da a
managemen “
„ I should manage da a and
s i e o use app op ia e
s anda ds and ools.”
„ I ha e lea n how o apply
da a managemen policies and
sha ing has become much
easie .”
NATIONAL
INSTITUTIONAL
PROJECT/GROUP
INDIVIDUAL
RDM4mic
Change managemen and con inious imp o emen s
Diso ganised, ad hoc Deploy basic s uc u es and ools Deploy s anda ds Deploy alida ion and
e i ica ion p ocesses, in a
domain c osswalks
Di e en da a s uc u es,
subjec i e documen a ion;
unnecessa y da a duplica ion,
ans e , con e sion; no cen al
da a s o age and access
in e ace; no objec i e/s a egy
Reo ganisa ion, de ini ion o
esponsibili ies, ans e o
knowledge; de ini ion,
es ablishmen , de elopmen and
documen a ion o managemen
and exchange p ocesses;
applica ion o me ada a o key
da a se s.
P ocesses a e s anda dised and
in eg a ed;T ainingon s anda ds;
ich me ada a
Valida ion and e i ica ion
p ocesses; me ada a desc ibed
wi h consis en ocabula y
local wo king g oup local in as uc u e Na ional and domain speci ic
in as uc u e
single use
low
Resou ce o alida e decisions
middle
Resou ce o make decisions
high
single use
low
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
Resea ch Da a Managemen
+ Consis en
ocabula y
Rich
me ada a
Value o da a
Asse o answe u u e
ques ions
In eg al o desision
making (mus ha e)
Resou ce o make
decisions (good o ha e)
Resou ce o alida e
decisions
Single use
Deg ee o in e ope abili y
Minimal
me ada a
+ Seman ics* + Full Seman ic
in e ope abili y
Ve i y null
hypo hesis
De end decisions
by eanalysing da a
Me a analysis using
agg ega ed da a
„The sky is he limi “–
implici knowledge leads
disco e y e o s
Use explici knowledge
om da a
„On he oad o FAIR …lessons lea n .“, Sa i ha V Ku iakose
*Seman ic:
he desc ip ion o he meanings o alues and o he
names o da a componen s
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
2019
NFDI4BIOIMAGE
2017 2021 2023
2
1
1
2
1
2
1
1
2
4
1
3
3
11
1
2
4
2
121
1
1
3
2
2023-2028
Na ional Resea chda a In as uc u e o BioImaging:
Implemen na ional in as uc u e and s anda ds
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
S e anie Weid kamp-Pe e s. (2023, June 22). NFDI4BIOIMAGE - Na ional Resea ch Da a In as uc u e o
Mic oscopy and BioImage Analysis - Online Kick-O 2023. Zenodo. h ps://doi.o g/10.5281/zenodo.8070038
2019
NFDI4BIOIMAGE
2017 2021 2023
2
1
1
2
1
2
1
1
2
4
1
3
3
11
1
2
4
2
121
1
1
3
2
2023-2028
PoL Bio-Image Analysis Symposium Susanne Kunis | Uni e si y Osnab ueck
