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DNA methylation and body mass index from birth to adolescence: meta-analyses of epigenome-wide association studies.

Vehmeijer, Florianne O L,Küpers, Leanne K,Sharp, Gemma C,Salas, Lucas A,Lent, Samantha,Jima, Dereje D,Tindula, Gwen,Reese, Sarah,Qi, Cancan,Gruzieva, Olena,Page, Christian,Rezwan, Faisal I,Melton, Philip E,Nohr, Ellen,Escaramís, Geòrgia,Rzehak, Peter,Hei

Abstract

DNA methylation at three CpGs (cg05937453, cg25212453, and cg10040131), each in a different age range, was associated with BMI at Bonferroni significance, P < 1.06 × 10-7, with a 0.96 standard deviation score (SDS) (standard error (SE) 0.17), 0.32 SDS (SE 0.06), and 0.32 BMI SDS (SE 0.06) higher BMI per 10% increase in methylation, respectively. DNA methylation at nine additional CpGs in the cross-sectional childhood model was associated with BMI at false discovery rate significance. The strength of the associations of DNA methylation at the 187 CpGs previously identified to be associated with adult BMI, increased with advancing age across childhood and adolescence in our analyses. In addition, correlation coefficients between effect estimates for those CpGs in adults and in children and adolescents also increased. Among the top findings for each age range, we observed increasing enrichment for the CpGs that were previously identified in adults (birth Penrichment = 1; childhood Penrichment = 2.00 × 10-4; adolescence Penrichment = 2.10 × 10-7).

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RESEARCH Open Access DNA me hyla ion and body mass index om bi h o adolescence: me a-analyses o epigenome-wide associa ion s udies Flo ianne O. L. Vehmeije 1,2,3† , Leanne K. Küpe s 4,5,6† , Gemma C. Sha p 4 , Lucas A. Salas 7,8,9,10 , Saman ha Len 11 , De eje D. Jima 12,13 , Gwen Tindula 14 , Sa ah Reese 15 , Cancan Qi 16,17 , Olena G uzie a 18,19 , Ch is ian Page 20,21 , Faisal I. Rezwan 22,23 , Philip E. Mel on 24,25 , Ellen Noh 26,27 , Geò gia Esca amís 10,28,29 , Pe e Rzehak 30 , Anni Heiskala 31 , Tong Gong 32 , Samuli T. Tuominen 33 , Lu Gao 34 , Jason P. Ross 35 , Anne P. S a ling 36,37 , John W. Holloway 23,38 , Paul Youse i 4 , Gunn Ma i Aas ang 39 , Law ence J. Beilin 40 , Anna Be gs öm 18,19 , Elisabe h Binde 41,42 , Leda Cha zi 43 , E a Co peleijn 6 , Da ina Czama a 41 , B enda Eskenazi 44 , Susan Ewa 45 , Na alia Fe e 46 , Vei G o e 30 , Da iusz G usz eld 47 , Si i E. Håbe g 20 , Ca h ine Hoyo 13,48 , Ka en Huen 14 , Robe Ka lsson 32 , Inge Kull 49,50 , Jean-Paul Langhend ies 51 , Johanna Lepeule 52 , Ma ia C. Magnus 4,5,20 , Rachel L. Magui e 48,53 , Pe e L. Molloy 35 , Clai e Monne eau 1,3 , T e o A. Mo i 40 , Emily Oken 54 , Ka i Räikkönen 33 , She yl Ri as-Shiman 54 , Ca los Ruiz-A enas 8,9,10 , Syl ain Sebe 31 , Vilhelmina Ullema 32 , El i a Ve duci 55 , Judi h M. Vonk 6,17 , Cheng-jian Xu 16,17,56,57 , I ana V. Yang 36,58,59 , Hongmei Zhang 60 , Weiming Zhang 61 , Wil ied Ka maus 60 , Dana Dabelea 36,37,62 , Be e ly S. Muhlhausle 63 , Ca ie V. B e on 34 , Ja i Lah i 33,64 , Ca a ina Almq is 32,65 , Ma jo-Rii a Ja elin 31,66,67,68 , Be hold Kole zko 30 , Ma ine V ijheid 8,9,10 , Tho kild I. A. Sø ensen 4,69 , Rae-Chi Huang 70 , Syed Hasan A shad 38,71 , Wenche Nys ad 72 , E ik Melén 49,50 , Ge a d H. Koppelman 16,17 , S ephanie J. London 15 , Nina Holland 14 , Ma iona Bus aman e 8,9,10 , Susan K. Mu phy 53 , Ma ie-F ance Hi e 54,73,74 , And ea Bacca elli 75† , Ca oline L. Rel on 4† , Ha old Sniede 6† , Vincen W. V. Jaddoe 1,2,3† and Janine F. Felix 1,2*† Abs ac Backg ound: DNA me hyla ion has been shown o be associa ed wi h adiposi y in adul hood. Howe e , whe he simila DNA me hyla ion pa e ns a e associa ed wi h childhood and adolescen body mass index (BMI) is la gely unknown. Mo e insigh in o his ela ionship a younge ages may ha e implica ions o u u e p e en ion o obesi y and i s ela ed ai s. (Con inued on nex page) © The Au ho (s). 2020 Open Access This a icle is licensed unde a C ea i e Commons A ibu ion 4.0 In e na ional License, which pe mi s use, sha ing, adap a ion, dis ibu ion and ep oduc ion in any medium o o ma , as long as you gi e app op ia e c edi o he o iginal au ho (s) and he sou ce, p o ide a link o he C ea i e Commons licence, and indica e i changes we e made. The images o o he hi d pa y ma e ial in his a icle a e included in he a icle's C ea i e Commons licence, unless indica ed o he wise in a c edi line o he ma e ial. I ma e ial is no included in he a icle's C ea i e Commons licence and you in ended use is no pe mi ed by s a u o y egula ion o exceeds he pe mi ed use, you will need o ob ain pe mission di ec ly om he copy igh holde . To iew a copy o his licence, isi h p://c ea i ecommons.o g/licenses/by/4.0/. The C ea i e Commons Public Domain Dedica ion wai e (h p://c ea i ecommons.o g/publicdomain/ze o/1.0/) applies o he da a made a ailable in his a icle, unless o he wise s a ed in a c edi line o he da a. * Co espondence: [email p o ec ed] † Flo ianne O.L. Vehmeije and Leanne K. Küpe s a e au ho s who con ibu ed equally o he wo k. † And ea Bacca elli, Ca oline L. Rel on, Ha old Sniede , Vincen W.V. Jaddoe, and Janine F. Felix a e au ho s join ly supe ised he wo k. 1 The Gene a ion R S udy G oup, E asmus MC, Uni e si y Medical Cen e Ro e dam, Room Na-2918, E asmus MC, PO Box 2040, 3000 CA Ro e dam, he Ne he lands 2 Depa men o Pedia ics, E asmus MC, Uni e si y Medical Cen e Ro e dam, Ro e dam, he Ne he lands Full lis o au ho in o ma ion is a ailable a he end o he a icle Vehmeije e al. Genome Medicine (2020) 12:105 h ps://doi.o g/10.1186/s13073-020-00810-w (Con inued om p e ious page) Me hods: We examined whe he DNA me hyla ion in co d blood and whole blood in childhood and adolescence was associa ed wi h BMI in he age ange om 2 o 18 yea s using bo h c oss-sec ional and longi udinal models. We pe o med me a-analyses o epigenome-wide associa ion s udies including up o 4133 child en om 23 s udies. We examined he o e lap o indings epo ed in p e ious s udies in child en and adul s wi h hose in ou analyses and calcula ed en ichmen . Resul s: DNA me hyla ion a h ee CpGs (cg05937453, cg25212453, and cg10040131), each in a di e en age ange, was associa ed wi h BMI a Bon e oni signi icance, P<1.06×10 −7 , wi h a 0.96 s anda d de ia ion sco e (SDS) (s anda d e o (SE) 0.17), 0.32 SDS (SE 0.06), and 0.32 BMI SDS (SE 0.06) highe BMI pe 10% inc ease in me hyla ion, espec i ely. DNA me hyla ion a nine addi ional CpGs in he c oss-sec ional childhood model was associa ed wi h BMI a alse disco e y a e signi icance. The s eng h o he associa ions o DNA me hyla ion a he 187 CpGs p e iously iden i ied o be associa ed wi h adul BMI, inc eased wi h ad ancing age ac oss childhood and adolescence in ou analyses. In addi ion, co ela ion coe icien s be ween e ec es ima es o hose CpGs in adul s and in child en and adolescen s also inc eased. Among he op indings o each age ange, we obse ed inc easing en ichmen o he CpGs ha we e p e iously iden i ied in adul s (bi h P en ichmen = 1; childhood P en ichmen =2.00×10 −4 ;adolescenceP en ichmen =2.10×10 −7 ). Conclusions: The e we e only minimal associa ions o DNA me hyla ion wi h childhood and adolescen BMI. Wi h he ad ancing age o he pa icipan s ac oss childhood and adolescence, we obse ed inc easing o e lap wi h al e ed DNA me hyla ion loci epo ed in associa ion wi h adul BMI. These indings may be compa ible wi h he hypo hesis ha DNA me hyla ion di e ences a e mos ly a consequence a he han a cause o obesi y. Keywo ds: Body mass index, Childhood obesi y, DNA me hyla ion, Epigene ics Backg ound An accumula ing body o e idence sugges s ha exposu es in ea ly li e a e associa ed wi h childhood BMI [1]. I is hy- po hesized ha changes in DNA me hyla ion may unde lie he associa ions o ea ly-li e exposu es wi h childhood adi- posi y [2–4]. Thus a , mos o he e idence ega ding DNA me hyla ion and adiposi y s ems om adul s udies [5–9]. The la ges epigenome-wide associa ion s udy (EWAS) in adul s iden i ied c oss-sec ional associa ions be ween DNA me hyla ion a 187 loci and BMI in o e 10, 000 pa icipan s [5]. P e ious s udies o he associa ions be ween epigenome-wide DNA me hyla ion and childhood and adolescen adiposi y we e small and inconclusi e [10– 16]. Candida e gene s udies in childhood iden i ied associa- ions o DNA me hyla ion in co d and childhood blood wi h measu es o adiposi y [17–24]. Epigenome-wide asso- cia ion s udies in child en and adolescen s, wi h sample sizes anging om 40 o 700 indi iduals, iden i ied a limi ed numbe o cy osine-phospha e-guanine si es (CpGs) associ- a ed wi h BMI [11–13,15,25]. Al hough indings o some s udies sugges ha di e ences in DNA me hyla ion may p ecede he de elopmen o adiposi y, ecen s udies in adul s, using me hods such as Mendelian andomiza ion, posi ha al e a ions in DNA me hyla ion a e p edomin- an ly he consequence o adiposi y, a he han he cause [4,5,9,26,27]. The di ec ion o any causal pa hway has no been obus ly app aised in child en. Ob aining mo e knowledge on he associa ion be ween DNA me hyla ion and adiposi y al eady in childhood may ha e implica ions o u u e p e en ion o obesi y and i s ela ed ai s. We pe o med a me a-analysis o epigenome-wide asso- cia ion s udies o BMI in up o 4133 pa icipan s om 23 s udies. We assessed associa ions o DNA me hyla ion in co d blood, in childhood and adolescence wi h BMI in child en aged 2–18 yea s. We also compa ed he e ec es- ima es and examined whe he he e was en ichmen in ou da a o CpGs p e iously iden i ied o hei associ- a ion wi h adolescen and adul adiposi y. Me hods Pa icipan s We me a-analyzed epigenome-wide associa ion s udies o co d o whole blood me hyla ion wi h childhood o adolescen body mass index (BMI). We used da a om up o 4133 pa icipan s om 23 s udies collabo a ing in he P egnancy And Childhood Epigene ics (PACE) Con- so ium, Li eCycle P ojec , and Nu iP og am P ojec (Addi ional ile 1: Table S1A-D and Addi ional ile 2: Supplemen a y Me hods) [28,29]: ALSPAC, BAMSE, CHAMACOS, CHOP S udy, CHS, DOMInO T ial, GECKO D en he coho , Gene a ion R S udy, GOYA s udy, Heal hy S a S udy, HELIX, INMA, IOW F1, IOW F2, MoBa1, MoBa2, NEST, NFBC 1986, PIAMA s udy, PREDO s udy, P ojec Vi a, Raine, and STOPPA ( ull names in Supplemen a y Me hods). Coho pa ici- pan s we e mainly o Eu opean ances y, bu he e we e also coho s wi h (pa ly) non-Eu opean e hnici ies (A - ican, Hispanic, and Abo iginals). Mos coho s a e p o- spec i e bi h coho s. We excluded mul iple bi hs, siblings (maximum one child pe amily), physician- diagnosed synd omic obesi y cases, and any ype o ma- e nal diabe es (including ges a ional diabe es). In o med consen was ob ained o all pa icipan s, and all s udies Vehmeije e al. Genome Medicine (2020) 12:105 Page 2 o 15 ecei ed app o al om hei local e hics commi ees (see Addi ional ile 2: Supplemen a y Me hods). DNA me hyla ion DNA me hyla ion was measu ed in co d blood and whole blood samples, in child en and adolescen s using he Illumina In inium® HumanMe hyla ion450 BeadChip assay (Illumina, San Diego, CA, USA) [30]. Each coho independen ly conduc ed hei p e e ed quali y con ol and no maliza ion me hod, see Addi ional ile 2: Supple- men a y Me hods o de ails. Un ans o med no malized be a alues o indi idual CpG si es we e used as expos- u e a iables. I mul iple measu emen s o DNA me hy- la ion and BMI we e a ailable wi hin an age ange, we used he oldes age wi hin ha ange o which BMI and DNA me hyla ion we e a ailable a he same ime poin . Ou lying me hyla ion be a alues we e excluded using he ollowing me hod: alues < (25 h pe cen ile −3*in e - qua ile ange (3IQR)) and alues > (75 h pe cen ile + 3IQR) we e emo ed [31]. DNA me hyla ion is exp essed as he p opo ion o alleles a which he DNA was me hyla ed a a speci ic si e and hence akes alues om ze o o one. Childhood BMI Heigh and weigh we e measu ed in each s udy using es ablished p o ocols as desc ibed in de ail in he Add- i ional ile 2: Supplemen a y Me hods. The p ima y ou - come was BMI, calcula ed as weigh /heigh 2 in kg/m 2 ,ona con inuous scale measu ed in h ee age anges: 2–5 yea s (ea ly childhood), 5–10 yea s (la e childhood), and 14–18 yea s (adolescence). I mul iple BMI and DNA me hyla ion measu emen s we e a ailable, we used he measu emen s a heoldes agewi hin heage ange o whichBMIand DNA me hyla ion we e a ailable a he same ime poin . BMI alues we e hen ans o med in o sex- and age- adjus ed s anda d de ia ion sco es (SDS) using LMSG ow h [32–34]. The In e na ional Obesi y Task Fo ce (IOTF) s anda d was used o de ine cu o s o BMI o unde - weigh , no mal weigh , o e weigh , and obesi y in child en, c ea ed wi h he B i ish 1990 g ow h e e ence and in o - ma ion o pa icipan s on BMI, sex, and age [35,36]. In sec- onda y analyses, we used a bina y ou come a iable wi h no mal-weigh child en as con ols and o e weigh o obese child en as cases. Unde weigh child en we e ex- cluded om hese seconda y analyses. I a s udy had ≤10 pa icipan s in one o he (case o con ol) g oups, his s udy was excluded om he seconda y analyses. Co a ia es Co a ia es included in all models we e ma e nal co a i- a es: ma e nal age, ma e nal educa ional le el (coho de - ini ion), ma e nal smoking s a us du ing p egnancy (any smoking e sus no smoking), ma e nal p e-p egnancy o ea ly p egnancy BMI and pa i y (mul ipa ous e sus nul- lipa ous), and ges a ional age a bi h. Fo de ails on coho -speci ic collec ion me hods, see Addi ional ile 2: Supplemen a y Me hods. We es ima ed whi e blood cell p opo ions (B cells, CD8+ T cells, CD4+ T cells, g anulo- cy es, NK cells, and monocy es) using he e e ence-based Houseman me hod wi h he Reinius e e ence in he min i package in R [37–40]. A sensi i i y analysis using he co d blood-speci ic Bakulski e e ence was pe o med in he Gene a ion R and ALSPAC s udies [41]. Ba ch e ec s we e adjus ed o using coho -speci ic me hods, see Add- i ional ile 2: Supplemen a y Me hods. Addi ional co a i- a es added in he c oss-sec ional childhood analyses we e bi h weigh and b eas eeding. The adolescen analyses we e addi ionally adjus ed o adolescen age, sex, own smoking s a us, and pube y s a us. Pube y s a us was ca ego ized in o ea ly pube y (i bo h b eas and pubic hai Tanne s ages (o compa able classi ica ion) we e 1, 2, o 3 and i gi ls we e p e-mena cheal o boys did no ha e oice change ye ) and la e pube y (i ei he b eas o pubic hai Tanne s ages (o compa able classi ica ion) we e 4 o 5 o i gi ls we e pos -mena cheal o boys had had hei oice change) [42–44]. Fu he de ails a e p o- ided in he s udy-speci ic Addi ional ile 2: Supplemen- a y Me hods. S udy-speci ic analyses Associa ions o DNA me hyla ion wi h childhood o adolescen BMI we e pe o med in indi idual s udies on pa icipan s wi h comple e da a on all co a ia es. In s udies wi h mo e han one e hnic g oup, each g oup was analyzed sepa a ely. We used obus linea eg es- sion models o he con inuous ou come o BMI-SDS and gene alized linea eg ession models o he case/ con ol analyses o o e weigh and obesi y e sus no mal weigh , acco ding o a p e-speci ied analysis plan. EWAS analyses we e conduc ed using DNA me hyla ion a h ee ime poin s: bi h, childhood and adolescence, and BMI da a collec ed a h ee ime poin s: ea ly childhood (2–5 yea s), la e childhood (5–10 yea s), and adolescence (12-18y) (Table 1). We ca ego ized he childhood pe iod in o ea ly and la e childhood o o e come any age- speci ic e ec s and he po en ial in luence o he adipos- i y ebound on he esul s [45]. Depending on da a a ail- abili y, coho s pa icipa ed in one o mo e o ou analyses: (analysis A) longi udinal associa ions o co d blood DNA me hyla ion wi h ea ly childhood BMI (2– 5 yea s; 3295 child en om 13 s udies), (analysis B) lon- gi udinal associa ions o co d blood DNA me hyla ion wi h la e childhood BMI (5–10 yea s; 4133 child en om 12 s udies), (analysis C) c oss-sec ional associa ions o childhood blood DNA me hyla ion wi h childhood BMI (2–10 yea s; 3371 child en om 11 s udies), and (ana- lysis D) c oss-sec ional associa ions o adolescen blood Vehmeije e al. Genome Medicine (2020) 12:105 Page 3 o 15 DNA me hyla ion wi h adolescen BMI (14–18 yea s; 2842 adolescen s om 7 s udies) (Table 1). Pa icipa ing s udies pe analysis a e shown in Addi ional ile 1: Table S1A-D. Co d blood analyses we e adjus ed o ma e nal age, educa ional le el, smoking s a us, p e-p egnancy o ea ly p egnancy BMI, pa i y, ges a ional age, ba ch, and es i- ma ed cell ype p opo ions. The c oss-sec ional analysis in childhood was addi ionally adjus ed o child co a i- a es bi h weigh and b eas eeding; in con as , he c oss-sec ional analysis in adolescence was adjus ed o he same co a ia es as analysis C plus adolescen sex, age, and smoking and pube y s a us. Me a-analyses A e pe o ming quali y con ol on all s udies, we com- bined esul s in a ixed-e ec s in e se a iance-weigh ed me a-analysis using METAL [46,47]. All ollow-up ana- lyses we e conduc ed in R [39]. The me a-analyses we e done independen ly by wo s udy g oups, and he esul s we e compa ed. A e exclusion o p obes ha we e measu ed in only one s udy, ha mapped o X and Y ch omosomes and p obes ha co-hyb idized o al e na e sequences (c oss- eac i e p obes), we included 429,959 p obes o analysis A, 429,959 p obes o analysis B, 429, 957 p obes o analysis C, and 428,967 p obes o ana- lysis D [48,49]. In he esul iles o he main me a- analyses, we lagged p obes ha map o DNA con aining a single nucleo ide polymo phism (SNP), o epe i i e sequence elemen s, o o DNA ha bo ing an INDEL (Addi ional ile 3: Table S2A-D) [48,49]. We co ec ed o mul iple es ing using bo h he Bon e oni co ec- ion, which gi es a signi icance h eshold o P< 1.16 × 10 −7 (0.05/429,959), and he less s ingen alse disco e y a e (FDR) h eshold using he me hod by Benjamini and Hochbe g [50]. EWAS esul s we e summa ized as mean (and s anda d e o ) di e ences in BMI-SDS pe 10% inc ease in me hyla ion o each CpG. We c ea ed olcano plo s o isualize magni ude and di ec ion o e - ec ( educed o inc eased me hyla ion) along wi h he le el o s a is ical signi icance. We calcula ed he I 2 s a - is ic o explo e he e ogenei y ac oss s udies. The I 2 es i- ma es he p opo ion o a ia ion in he me a-analysis esul s o each CpG si e ha is due o be ween-s udy di e ences a he han andom/sampling a ia ion. He - e ogenei y was de ined as an I 2 alue o > 50 and shown g aphically in o es plo s. We pe o med lea e-one-ou analyses, in which we e an he main me a-analysis e- pea edly wi h one o he 23 s udies emo ed each ime, o explo e i any s udy in luenced indi idual indings. We enhanced he anno a ion p o ided by Illumina using he UCSC Genome B owse . All o he anno a ions use he human Feb ua y 2009 (GRCh37/hg19) assembly. We upda ed he gene names manually in all esul iles using HUGO gene nomencla u e, and in case hey we e no ound he e, we used he NCBI gene websi e on No em- be 5, 2019 [51–53]. To explo e he associa ions o he ex eme uppe alues o he BMI dis ibu ion, we pe o med case/con- ol analyses (o e weigh and obesi y e sus no mal weigh ). Unde weigh child en we e excluded om hese analyses, leading o sample sizes o N= 491 cases and 2540 con ols (analysis A), N= 707 cases and 3217 con- ols (analysis B), N= 644 cases and 2567 con ols (ana- lysis C), and N= 507 cases and 2188 con ols (analysis D) (Addi ional ile 4: Table S3A-D). To examine whe he any o he Bon e oni-signi ican o FDR-signi ican CpGs in ou analyses we e close o Table 1 O e iew o main analyses, seconda y analyses, and sensi i i y analyses Analysis Main analyses Seconda y analyses: bina y model (N), cases = o e weigh and obesi y, con ols = no mal weigh Sensi i i y analyses DNA me hyla ion in he blood BMI SD sco es NEu opeans only (N) Wi hou s udies > 30% o e weigh and obesi y (N) Co d blood analyses A Bi h (co d blood) Ea ly childhood (2–5 yea s) 3295 Cases = 491 Con ols = 2540 2902 2989 B Bi h (co d blood) La e childhood (5–10 yea s) 4133 Cases = 707 Con ols = 3217 3657 3489 C oss-sec ional analyses C Childhood (whole blood) Childhood (2–10 yea s) 3371 Cases = 644 Con ols = 2567 3026 3171 D Adolescence (whole blood) Adolescence (12–18 yea s) 2842 Cases = 507 Con ols = 2188 NA NA Analyses A and B we e adjus ed o ma e nal age, educa ional le el, smoking s a us, p e-p egnancy o ea ly p egnancy BMI, pa i y, ges a ional age a bi h, ba ch, and es ima ed cell ype p opo ions Analyses C was adjus ed o ma e nal age, educa ional le el, smoking s a us, p e-p egnancy o ea ly p egnancy BMI, pa i y, ges a ional age a bi h, ba ch, es ima ed cell ype p opo ions, bi h weigh , and b eas eeding Analyses D was adjus ed o ma e nal age, educa ional le el, smoking s a us, p e-p egnancy o ea ly p egnancy BMI, pa i y, ges a ional age a bi h, ba ch, es ima ed cell ype p opo ions, bi h weigh , b eas eeding, adolescen sex, age smoking and pube y s a us Vehmeije e al. Genome Medicine (2020) 12:105 Page 4 o 15 BMI SNPs, we assessed i hese CpGs we e loca ed wi hin a 4-Mb window (± 2 Mb) su ounding he 15 gen- e ic loci associa ed wi h childhood body mass index [2, 54]. Fo he FDR-signi ican CpGs ha we e lagged be- cause hey we e po en ially in luenced by a SNP, we isually inspec ed densi y plo s in he Gene a ion R S udy o see whe he hese de ia ed om unimodali y (Addi ional ile 5: Supplemen a y In o ma ion, Fig. S6). To explo e DNA me hyla ion pa e ns in he egions a ound he signi ican CpGs, we assessed he associa- ions o all CpGs loca ed wi hin a 10-kb window (± 5 kb) su ounding hese CpGs wi h BMI in he ele an models (Addi ional ile 6: Table S4). Sensi i i y analyses To explo e whe he e hnic he e ogenei y may ha e a - ec ed ou esul s, we epea ed he me a-analyses includ- ing s udies wi h pa icipan s o Eu opean ances y only (N= 2902 (excluding h ee s udies o analysis A), N= 3657 (excluding h ee s udies o analysis B), N=3026 (excluding wo s udies o analysis C)), he la ges e hnic subg oup (Addi ional ile 7: Table S5A-C). E hnici y was de ined using sel - epo ed ques ionnai es unless speci- ied o he wise in he s udy-speci ic Supplemen a y Me hods (Addi ional ile 2). We pe o med addi ional analyses excluding s udies wi h a high pe cen age (> 30% (pe cen age calcula ed a e exclusion o unde weigh child en)) o child en wi h o e weigh and obesi y o ex- plo e whe he any associa ions ound may be d i en by mo e ex eme alues o BMI (included N= 2989 (exclud- ing wo s udies o analysis A), N= 3489 (excluding ou s udies o analysis B), N= 3171 (excluding one s udy o analysis C) (Addi ional ile 8: Table S6A-C). We also pe o med a hi d, conse a i e, sensi i i y analysis in all age g oups, excluding coho s o non-Eu opeans, s udies wi h a high pe cen age (> 30%) o child en wi h o e - weigh o obesi y, and s udies in which he sample was selec ed on o en iched o any pa icula exposu e o ou come (Addi ional ile 9: Table S7A-D). Compa ison wi h p e ious indings We explo ed whe he CpG si es associa ed wi h child- hood, adolescen , o adul BMI in p e ious s udies we e associa ed wi h BMI in ou da a. Fo p e ious candida e gene s udies and smalle EWASs (N< 1000), we pe - o med a look-up o he hi s, using a Bon e oni-adjus ed P alue cu o pe s udy, so o each s udy, he cu o was 0.05/(NCpGs om ha s udy) (Addi ional ile 10:Table S8) [7,15,17,18,20,21,23,24,55]. I he speci ic CpGs om a s udy we e no a ailable in ou da ase , we looked up all CpGs anno a ed o he ele an genes [17,24]. To es ablish whe he he CpG si es associa ed wi h BMI in p e iously epo ed la ge EWASs (N≥1000) we e o e - ep esen ed among ou CpGs wi h he smalles P alues, we examined he absolu e o e lap o he op CpGs om li e a u e wi h he op CpGs in ou analyses [5,6,9,25, 26,56–59]. The la e we e de ined using wo cu o s: a s ingen cu o o P alue < 1 × 10 −5 and a mo e lenien one o P alue < 0.05. (Addi ional ile 11: Table S9). We used a hype geome ic es o calcula e en ichmen wi h he phype unc ion in he R S a s package in R. We examined he 187 CpGs iden i ied in he la ges adul s udy (N= 10,261) o da e in mo e de ail in ou e- sul s [5]. We es ed whe he he en iched CpGs signi i- can ly o e lapped be ween ou analyses using chi-squa e es s. We used Pea son’s co ela ion coe icien s o examine he co ela ions be ween he e ec es ima es o hese 187 CpGs in adul s and hose in ou analyses [5]. Using Fishe ’s exac es , we calcula ed whe he he co - ela ion coe icien s a he a ious ages we e signi ican ly di e en om each o he . Func ional analyses We explo ed he po en ial unc ional in e p e a ion o he mos signi ican ly associa ed CpGs (P alue < 1 × 10 −4 ) in all models using Gene On ology (GO) and Kyo o Encyclopedia o Genes and Genomes (KEGG) en- ichmen analyses. We used he missMe hyl package, which enabled us o co ec o he numbe o p obes pe gene on he 450K a ay, based on he May 5, 2020, e sion o he GO and he Oc obe 23, 2019, e sion o he KEGG sou ce da abases [60]. To il e ou he la ge, gene al pa hways, we se he numbe o genes o each gene se be ween 5 and 2000, espec i ely. We epo nominal P alues < 0.05 and FDR o en ichmen (Add- i ional ile 12, Table S10). Resul s Pa icipan s We included 2842 o 4133 pa icipan s om 23 independ- en coho s om he P egnancy And Childhood Epigene - ics (PACE) Conso ium [28]. We assessed associa ions o DNA me hyla ion in co d blood wi h BMI in ea ly child- hood (2–5yea s)(N= 3295, analysis A), DNA me hyla ion in co d blood wi h BMI in la e childhood (5–10 yea s) (N= 4133, analysis B), DNA me hyla ion in childhood wi h BMI in childhood (2–10 yea s) (N= 3371, analysis C), and DNA me hyla ion in adolescence wi h BMI in adolescence (12–18 yea s) (N= 2842, analysis D). De ails o pa icipan s and s udies used in he di e en analyses a e p esen ed in Table 1, Addi ional ile 1: Table S1A-D and Addi ional ile 2: Supplemen a y Me hods. Me a-analyses The main, seconda y, and sensi i i y analyses a e ou - lined in Table 1. Genomic in la ion ac o s (lambdas) o he main me a-analyses anged be ween 0.97 and 1.27 (Addi ional ile 5: Supplemen a y in o ma ion, Fig. 1a-d). Vehmeije e al. Genome Medicine (2020) 12:105 Page 5 o 15 Genomic in la ion ac o s (lambdas) o all coho -speci ic analyses a e shown in Addi ional ile 1: Table S1A-D. The main esul s a e shown in Table 2and Fig. 1. We did no iden i y associa ions a genome-wide signi icance o DNA me hyla ion in co d blood wi h BMI in ea ly childhood (analysis A, Fig. 1a, and Addi ional ile 3: Table S2A). DNA me hyla ion a one CpG, cg05937453 (SFRP5), in co d blood was signi ican ly associa ed wi h la e- childhood BMI (analysis B, Fig. 1b, and Addi ional ile 3: Table S2B). Fo each 10% inc ease in DNA me hyla ion a cg05937453 in co d blood, la e-childhood BMI inc eased 0.96 SD (s anda d e o (SE) 0.17). Co d blood DNA me hyla ion a his CpG was nominally signi ican ly asso- cia ed wi h BMI in ea ly-childhood (P alue = 0.004), bu DNA me hyla ion in childhood and adolescence was no associa ed wi h BMI in he c oss-sec ional analyses (Add- i ional ile 13: Table S11). In he c oss-sec ional analysis (analysis C), childhood DNA me hyla ion a cg25212453 (SLC43A2) was associa ed wi h childhood BMI a e Bon e oni co ec ion. A 10% in- c ease in DNA me hyla ion a cg25212453 was associa ed wi h a 0.32 SD (SE 0.06) inc ease in childhood BMI (Fig. 1c and Addi ional ile 3:TableS2C).DNAme hyla iona his CpG a bi h and in adolescence was no associa ed wi h BMI (Addi ional ile 13: Table S11). DNA me hyla ion in childhood a nine addi ional CpGs in o nea o he genes was associa ed wi h childhood BMI using FDR P alue < 0.05 (Fig. 1c and Addi ional ile 3:TableS2C).DNAme hy- la ion in adolescence a cg10040131 (SFXN5) was associ- a ed wi h adolescen BMI a e Bon e oni co ec ion (analysis D, Fig. 1d and Addi ional ile 3: Table 2d). A 10% inc ease in DNA me hyla ion a cg10040131 was associa ed wi h a 0.32 SD (SE 0.06) highe BMI in adolescence. DNA me hyla ion a his CpG in childhood was nominally signi ican ly associa ed wi h childhood BMI (P alue = 0.0002). The associa ion o DNA me hyla ion a his CpG in co d blood and BMI in childhood was no sig- ni ican (Addi ional ile 13: Table S11). Associa ions o DNA me hyla ion wi h BMI did no show a p e e en ial di ec ion o e ec in any o he analyses ( ol- cano plo s, Addi ional ile 5: Supplemen a y In o ma ion, Fig. S2A-D). We obse ed e y li le e idence o he e ogen- ei y be ween s udies among he Bon e oni-signi ican ly associa ed CpG si es, wi h all I 2 ≤50 (Addi ional ile 3: Table 2a-d and o es plo s, Addi ional ile 5: Supplemen- a y In o ma ion, Fig. S3A, B and L). We ound e idence o Fig. 1 Manha an plo s o he me a-analyses o DNA me hyla ion and childhood o adolescen BMI. Manha an plo s showing he me a-analysis esul s o associa ions o DNA me hyla ion in co d blood wi h ea ly childhood BMI (a) and la e childhood BMI (b), o DNA me hyla ion in whole blood in childhood wi h childhood BMI (c), and o DNA me hyla ion in whole blood in adolescence wi h adolescen BMI (d). The g ay line shows he Bon e oni-co ec ed signi icance h eshold o mul iple es ing (P< 1.06 × 10 −7 ). The o ange line shows he FDR-co ec ed signi icance h eshold o mul iple es ing Vehmeije e al. Genome Medicine (2020) 12:105 Page 6 o 15 be ween-s udy he e ogenei y (I 2 > 50) o 3 o he 9 FDR- signi ican ly associa ed CpG si es (Addi ional ile 3:Table2c and o es plo s, Addi ional ile 5: Supplemen a y In o ma- ion, Fig. S3C-K). The esul s o he wel e Bon e oni o FDR-signi ican ly associa ed CpGs we e s able a e omi - ing one s udy a a ime (lea e-one-ou analyses, Add- i ional ile 5: Supplemen a y In o ma ion, Fig. S4A-L). When BMI was dicho omized in o no mal and o e - weigh /obesi y, only one CpG in he c oss-sec ional model in childhood, cg06991974 (PRDM16-DT), showed e idence o associa ion. In he c oss-sec ional model du ing childhood, which included 644 child en wi h o e weigh /obesi y and 2567 no mal-weigh child en, DNA me hyla ion a cg06991974 was associa ed wi h an inc eased isk o o e weigh /obesi y in childhood (odds a io (OR) 3.10, 95% con idence in e al (CI) 2.08, 4.63) (Addi ional ile 4: Table S3A-D). None o he h ee indi idual Bon e oni-signi ican CpGs in he h ee di e en age anges no he 9 FDR-signi ican CpGs was wi hin a 4-Mb window su ounding he 15 known gene ic loci associa ed wi h childhood body mass index [54]. Fou o he 12 FDR signi ican CpGs con ained a single-nucleo ide polymo phism (SNP) [48,49]. We ound no indica ion o non-unimodal dis ibu ion o any o hese CpGs sugges ing ha me hyla ion measu e- men s a hese si es we e no ma kedly a ec ed by SNPs (Addi ional ile 5: Supplemen a y In o ma ion, Fig. S6). Two o he h ee Bon e oni-signi ican CpGs (cg05937453 and cg25212453) had o he nea by CpGs wi hin a 10-kb window (± 5 kb) measu ed on he 450K a ay (Add- i ional ile 6: Table S4). Cg05937453 (model B) was su - ounded by 24 o he CpGs, o which one was nominally signi ican ly associa ed wi h BMI (P alue < 0.05). Bo h we e loca ed in he TSS200 egion o SFRP5 wi h e ec es ima es in he same di ec ion. Cg25212453 (model C) was su - ounded by 13 o he CpGs, o which h ee we e nominally signi ican (P alues < 0.05). All we e loca ed in he gene body o SLC43A2 wi h e ec es ima es in he same di ec ion. Re- sul s o Bon e oni- and FDR-signi ican CpGs a e shown in Addi ional ile 6:TableS4. Sensi i i y analyses Findings we e consis en wi h he main esul s when e- s ic ed o up o 3657 pa icipan s o Eu opean e hnici y (Pea son co ela ion coe icien s o he e ec es ima es ac oss all CpG si es we e 0.86–0.97 and we e 0.99 ac oss op CpG si es (P alue < 1 × 10 −4 ) o all models (Add- i ional ile 7: Table S5A-C)). Simila ly, when he s udies wi h a high pe cen age (> 30%) o child en wi h o e - weigh o obesi y we e excluded, he esul s we e also consis en wi h he main analyses (Pea son co ela ion coe icien s o he e ec es ima es ac oss all CpG si es we e 0.89–0.98 and we e 0.99 ac oss op CpG si es (P alue < 1 × 10 −4 ) o all models (Addi ional ile 8: Table S6A-C)). Las ly, when he s udies o non-Eu opeans pa - icipan s, a high pe cen age o child en wi h o e weigh o obesi y and s udies in which he sample was selec ed on o en iched o any pa icula exposu e o ou come Table 2 CpG si es a which DNA me hyla ion was associa ed wi h child o adolescen BMI CpG CHR Loca ion Coe SE P alue FDR P alue Nea es gene Analysis B = associa ion o co d blood DNA me hyla ion wi h la e childhood BMI (5–10 yea s) cg05937453 10 99531765 0.96288 0.16871 1.15 × 10 −8 0.0049 SFRP5 Analysis C = c oss-sec ional associa ion o whole blood DNA me hyla ion wi h childhood BMI (2–10 yea s) cg25212453 17 1509953 0.31925 0.05978 9.27 × 10 −8 0.02075 SLC43A2 cg03500056 16 8814507 0.30577 0.05767 1.15 × 10 −7 0.02075 ABAT cg05281708 3 44690673 0.65856 0.12614 1.78 × 10 −7 0.02075 ZNF35 cg15125798 5 122621645 0.49705 0.09548 1.93 × 10 −7 0.02075 – cg04456029 12 113496126 0.27587 0.05358 2.63 × 10 −7 0.0226 DTX1 cg03431111 11 62621406 0.19261 0.03791 3.77 × 10 −7 0.0270 SNORD30;SNORD22;SNORD29; SNORD31;SNHG1 cg26889953 15 22915992 0.31743 0.06391 6.81 × 10 −7 0.0304 CYFIP1 cg19743522 12 113495566 0.33854 0.0682 6.92 × 10 −7 0.0304 DTX1 cg25877069 8 95003236 −0.45126 0.09092 6.94 × 10 −7 0.0304 – cg13931559 20 33146515 −0.84718 0.17082 7.07 × 10 −7 0.0304 MAP1LC3A Analysis D = c oss-sec ional associa ion o whole blood DNA me hyla ion wi h adolescen BMI (12–18 yea s) cg10040131 2 73178866 0.32434 0.0566 1.00 × 10 −8 0.0043 SFXN5 Coe icien s (Coe ) and s anda d e o s (SE) a e p esen ed pe 10% inc ease in he me hyla ion le el Analyses B was adjus ed o ma e nal age, educa ional le el, smoking s a us, p e-p egnancy o ea ly p egnancy BMI, pa i y, ges a ional age, ba ch, and es ima ed cell ype p opo ions. Analysis C was addi ionally adjus ed o child co a ia es bi h weigh and b eas eeding, whe eas analysis D was adjus ed o he same co a ia es as analysis C plus adolescen sex, age, smoking, and pube y s a us Vehmeije e al. Genome Medicine (2020) 12:105 Page 7 o 15 we e all excluded, esul s emained s ongly co ela ed o hose om he main models. Pea son co ela ion coe icien s o he e ec es ima es ac oss all CpG si es we e 0.64–0.97 and 0.95–0.99 ac oss op CpG si es (P alue < 1 × 10–4) o all models (Addi ional ile 9: Table S7A-D). Compa ison wi h p e ious indings Mos CpGs iden i ied o be associa ed wi h BMI in p e- ious candida e gene s udies o smalle EWASs (N< 1000) did no eplica e in ou esul s (Addi ional ile 10: Table S8) [7,15,17,18,20,21,23,24,55]. When com- pa ing he genome-wide signi ican indings om he la ges BMI EWASs (N> 1000) in adul s o ou mos sig- ni ican indings ac oss he ou age anges, we ound an inc easing o e lap wi h age (Table 3and Add- i ional ile 11: Table S9) [5,6,9,25,26,56–59]. We used wo cu o s o selec he mos signi ican indings in ou esul s: a P alue < 1 × 10 −5 , o iden i y “sugges i e” ind- ings, and a less s ingen , nominal P alue < 0.05. The numbe o CpGs ha me hese c i e ia a e p o ided in Table 3. Fi s , we examined he absolu e numbe o o e lapping CpGs be ween he s udies in adul s and ou indings wi h a P alue < 1 × 10 −5 and calcula ed en ich- men . Wi h ad ancing age ac oss childhood and adoles- cence, we obse ed inc easing en ichmen o he 187 CpGs p e iously epo ed o be associa ed wi h adul BMI in he la ges s udy o da e (N= 10,261) [5]. Fo he wo co d blood models, he e was no o e lap wi h he adul indings (P en ichmen = 1), o he c oss-sec ional model in childhood 2/187 adul hi s o e lapped, (P en ichmen = 0.0002), and o he c oss-sec ional model in adolescence 3/187 o e lapped (P en ichmen = 2.10 × 10 −7 )(Table3and Addi ional ile 11:Table S9). Using he less s ingen cu o (P alue < 0.05), his end was e en clea e . The o e lap be ween he 187 CpGs om he adul EWAS and he CpGs in ou da a wi h a P alue < 0.05 was 8/187 CpGs (P en ichmen = 0.77, analysis A) o he associa ion o co d blood DNA me hyla ion and ea ly childhood BMI and 11/187 CpGs (P en ichmen = 0.30, analysis B) o he as- socia ion o co d blood DNA me hyla ion and la e child- hood BMI. Fo he c oss-sec ional model in childhood, he o e lap was 61/187 CpGs (P en ichmen = 1.97 × 10 −20 ,ana- lysis C), and in adolescence, he o e lap was 77/187 CpGs (P en ichmen = 1.68 × 10 −44 , analysis D) (Table 3and Add- i ional ile 11: Table S9). Twen y-se en CpGs we e among he en iched CpGs in bo h he childhood and he adoles- cen model. This o e lap was no signi ican (P= 0.88). Co ela ion coe icien s be ween he e ec es ima es o he 187 hi s and he e ec es ima es o hose CpGs in he ou models inc eased wi h age (analysis A = −0.186 (P= 0.01), analysis B = −0.013 (P= 0.86), analysis C = 0.604 (P= 5.31 × 10 −20 ), and analysis D = 0.816 (P= 7.89 × 10 −46 ). The di e ence in co ela ion coe icien s was signi ican o all compa isons (P’s o compa ison be ween co ela ion coe icien s < 0.01) excep o he compa ison be ween models A and B (P= 0.09). E ec sizes o he associa ions o hese 187 adul BMI CpGs in ou analyses inc eased wi h ad ancing age o chil- d en in ou analyses (Addi ional ile 5: Supplemen a y In- o ma ion, Fig. S5). We ound simila ends o en ichmen o CpGs om o he EWASs in adul s and ad- olescen s (Table 3)[6,9,25,26,56–59]. O hose indings om adul s udies ha had a nominal P alue (< 0.05) in ou models, 17–35%we e epo edbymo e hanone adul s udy. Mos o hese we e ound in wo o h ee s udies, bu ou , cg06500161, cg19750657, cg12593793, and cg18181703, we e epo ed in six o se en p e ious analyses. Func ional analyses A unc ional en ichmen analysis using genes linked o he CpGs wi h P alues < 1 × 10 −4 in each o he models showed no unc ional en ichmen o Gene On ology (GO) e ms o Kyo o Encyclopedia o Genes and Genomes (KEGG) e ms (FDR < 0.05) (Addi ional ile 12: Table S10). Discussion In his la ge me a-analysis o EWASs o childhood and adolescen BMI, we ound li le e idence o an associa ion be ween DNA me hyla ion and childhood o adolescen BMI. DNA me hyla ion a h ee di e en CpGs, each one in a di e en age ange, was associa ed wi h BMI in ea ly li e. Wi h he ad ancing age o child en in ou analyses, we obse ed inc easing en ichmen o CpGs p e iously iden i ied o hei ela ion wi h adolescen o adul adi- posi y. In addi ion, o he 187 CpGs iden i ied in he la - ges p e ious s udy o adul BMI, we ound inc easing e ec sizes and inc easing co ela ions be ween he adul e ec sizes and hose in ou analyses, wi h age. In e p e a ion o main indings Childhood obesi y is a majo public heal h p oblem and associa ed wi h sho - and long- e m mo bidi y and mo - ali y [61]. Al hough he e is some e idence om p e ious s udies ha DNA me hyla ion may media e associa ions o p egnancy- ela ed exposu es wi h o sp ing adiposi y, only ew speci ic CpG si es ha e been iden i ied [4,27]. Thus a , mos o he e idence o associa ions o DNA me hyla ion wi h adiposi y s ems om adul s udies. In his s udy, we ound li le e idence o an associa ion be ween DNA me hyla ion and childhood o adolescen BMI. DNA me hyla ion a h ee CpGs (cg05937453, cg25212453, and cg10040131), each in a di e en age ange, was associa ed wi h BMI a Bon e oni signi i- cance, P< 1.06 × 10 −7 . Howe e , we did obse e inc eas- ing en ichmen and inc easing poin es ima es o CpGs Vehmeije e al. Genome Medicine (2020) 12:105 Page 8 o 15 Table 3 Absolu e numbe o o e lapping CpGs and P alues o he en ichmen o signi ican CpGs om p e ious EWASs (N> 1000) in ou da a P e ious s udy (Nsi es associa ed wi h BMI) Signi icance le el Analysis A: associa ion o co d blood DNA me hyla ion wi h ea ly childhood BMI (2–5 yea s) Analysis B: associa ion o co d blood DNA me hyla ion wi h la e childhood BMI (5–10 yea s) Analysis C: c oss- sec ional analysis o whole blood DNA me hyla ion wi h childhood BMI (2–10 yea s) Analysis D: c oss-sec ional analysis o whole blood DNA me hyla ion wi h adolescen BMI (12–18 yea s) 1×10 −5 N=7 N=8 N=51 N=26 0.05 N= 22,687 N= 20,645 N= 37,074 N= 25,292 Ali e al. [56] (3 CpGs) 1 × 10 −5 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 0.05 0 P en ichmen =1 0 P en ichmen =1 1/3 P en ichmen = 0.24 0 P en ichmen =1 Aslibekyan e al. [6](8 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 0.05 0 P en ichmen =1 0 P en ichmen =1 1/8 P en ichmen = 0.51 2/8 P en ichmen = 0.08 Campanella e al. [57] (26 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 1/26 P en ichmen = 0.002 0.05 3/26 P en ichmen = 0.16 1/26 P en ichmen = 0.72 6/26 P en ichmen = 0.02 11/26 P en ichmen = 1.006 × 10 −7 Geu s e al. [58] (310 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 2/310 P en ichmen = 0.0006 2/310 P en ichmen = 0.0002 0.05 12/310 P en ichmen = 0.90 13/310 P en ichmen = 0.73 103/310 P en ichmen = 3.92 × 10 −34 125/310 P en ichmen = 6.63 × 10 −70 Mendelson e al. [9] (83 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 2/83 P en ichmen = 4.67 × 10 −5 3/83 P en ichmen = 1.81 × 10 −8 0.05 4/83 P en ichmen = 0.64 8/83 P en ichmen = 0.045 28/83 P en ichmen = 1.36 × 10 −10 45/83 P en ichmen = 3.02 × 10 −33 Sayols-Baixe as e al. [59] (96 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 0.05 8/96 P en ichmen = 0.13 9/96 P en ichmen = 0.04 24/96 P en ichmen = 1.53 × 10 −6 30/96 P en ichmen = 1.85 × 10 −14 Sun e al. [26]black pa icipan s (36 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 1/36 P en ichmen = 0.002 0.05 3/36 P en ichmen = 0.30 6/36 P en ichmen = 0.007 13/36 P en ichmen = 4.98 × 10 −6 22/36 P en ichmen = 1.50 × 10 −18 Sun e al. [26]whi e pa icipan s (349 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 0.05 12/349 P en ichmen = 0.959 22/349 P en ichmen = 0.12 86/349 P en ichmen = 4.13 × 10 −19 116/349 P en ichmen = 1.75 × 10 −54 Wahl e al. [5] (187 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 2/187 P en ichmen = 0.0002 3/187 P en ichmen = 2.10 × 10 −7 0.05 8/187 P en ichmen = 0.77 11/187 P en ichmen = 0.29 61/187 P en ichmen = 1.97 × 10 −20 77/187 P en ichmen = 1.68 × 10 −44 Wang e al. [25] (54 CpGs) 1×10 −5 0 P en ichmen =1 0 P en ichmen =1 0 P en ichmen =1 1/54 P en ichmen = 0.003 0.05 2/54 P en ichmen = 0.79 4/54 P en ichmen = 0.26 23/54 P en ichmen = 2.49 × 10 −11 33/54 P en ichmen = 3.98 × 10 −27 NCpGs in ≥2 adul s udies 0.05 9/52 (17.3%) 23/75 (30.7%) 98/347 (28.2%) 163/465 (35.1%) Two cu o s we e used o selec he signi ican indings in ou esul s: a P alue < 1 × 10 −5 , o iden i y “sugges i e” indings, and a less s ingen , nominal P alue < 0.05, o iden i y any ends. We used a hype geome ic es o calcula e en ichmen wi h he phype unc ion in he R S a s package in R. Resul s in bold a e nominally signi ican . O hose indings om adul s udies ha had a nominal P alue (< 0.05) in ou models, 17–35% we e epo ed by mo e han one adul s udy Vehmeije e al. Genome Medicine (2020) 12:105 Page 9 o 15