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I nt e r p lay of c o m put e r si m u la t i on s a nd x - r ay a b s o r pt i on s p ec t r a i n th e s tud y of th e b r o m i d e h y d r a t i on s t r u c tu r e P at rick J . M e rkli ng, R eg l a A y a l a, J o s e ´M . M a r tı ´ ne z , R afae l R . P appa l a r do, and E n ri que S a ´ n c he z M a rc o s a ) Depa r t amen t o de Qu ı ´m i ca F ı ´ s i ca, Un i ve rs i dad de Sev ill a, 41012-Sev ill a, Spa i n R ece i ved 4 Apr il 2003 ; accep t ed 1 J u l y 2003 X-ray ab s orp ti on s pec t ra EXA FS and XANE S were genera t ed fro m s nap s ho t s of a M on t e C ar l o M C s i m u l a ti on of a bro m i de i on aqueou s s o l u ti on and fro m m ode l s t ruc t ure s . The M C s i m u l a ti on re li e s on a recen tl y deve l oped and t e s t ed po l ar i zab l e po t en ti a l ba s ed on ab i n iti opo t en ti a l energy s urface s . A co m par i s on w it h t he exper i m en t a l K -edge B r s pec t ru m of a 0.3 M Y B r3aqueou s s o l u ti on wa s perfor m ed. XANE S s pec t ra are reproduced accep t ab l y on l y i f s t a ti s ti ca l fl uc t ua ti on s are i nc l uded, wh i ch i s perfor m ed i n t h i s work by u s i ng s nap s ho t s fro m co m pu t er s i m u l a ti on. A s expec t ed, s i ng l e s ca tt er i ng B rO con t r i bu ti on s are do m i nan t i n t he ca s e of t he EXA FS reg i on. Due t o t h i s fac t , B r i n wa t er i s a good m ode l s y s t e m for s t udy i ng t he i n fl uence of t he d i s t r i bu ti on of d i s t ance s on t he de t er m i na ti on of s t ruc t ura l para m e t er s . Then, a para ll e l s t udy of t he da t a ana l y s i s procedure of t he exper i m en t a l EXA FS s pec t ru m and t ho s e t heore ti ca ll y co m pu t ed fro m t he s t ruc t ure s s upp li ed by t he M C s i m u l a ti on, wa s carr i ed ou t . The s hape of t he d i s t r i bu ti on func ti on and it s a s y mm e t ry m u s t be t aken i n t o accoun t i n a prac ti ca l way t o ob t a i n a m ore accura t e de t er m i na ti on of t he B rO fi r s t - s he ll d i s t ance. A fur t her re fi ne m en t con s i s t s i n u s i ng t he co m pu t er s i m u l a ti on t o ex t rapo l a t e t he B rO d i s t ance fro m t he exper i m en t a l EXA FS s pec t ru m . In t h i s way, a B rO d i s t ance of 3.44 0.07 Å and a coord i na ti on nu m ber of 6 0.5 were de t er m i ned. © 2003 Ame r i can In s tit u t e o f Phy s i c s .DOI : 10.1063 / 1.1603719 I. I NTR O DUCT I O N The s t ruc t ure of i on i c s o l u ti on s ha s been a m a tt er of i ncrea s i ng i n t ere s t fro m exper i m en t a l and t heore ti ca l po i n t s of v i ew.1–3 The m a i n exper i m en t a l t echn i que s for s t ruc t ura l s t ud i e s of s uch s y s t e ms are x-ray d i ffrac ti on X R D , neu t ron d i ffrac ti on ND , and x-ray ab s orp ti on s pec t ro s copy XA S . A lt hough X R D and ND can y i e l d s t ruc t ura l i nfor m a ti on abou t d i s ordered s y s t e ms li ke m o s t li qu i d s , t he i r accuracy decrea s e s s t rong l y i n t he ca s e of m u lti co m ponen t s y s t e ms X R D or requ i re s con s i derab l e s yn t he ti c effor t s t o perfor m t he i s o t op i c s ub s tit u ti on s ND .4,5 Th i s fac t re s t r i c t s t he i r u s e, a s doe s t he need for re l a ti ve l y h i gh concen t ra ti on s . Si nce t he 1980 s , one of t he XA S t echn i que s , ex t ended x-ray ab s orpti on fi ne s t ruc t ure EXA FS , ha s been app li ed t o de t er m i ne t he p s eudopar ti a l pa i r corre l a ti on func ti on s of a t o ms i n bo t h cry s t a lli ne and a m orphou s s y s t e ms .6 B ecau s e XA S i s e l e m en t - s pec ifi c, t he l oca l s t ruc t ure around one t ype of a t o m can be ob t a i ned by EXA FS . Add iti ona ll y, it can be app li ed t o a l arge range of concen t ra ti on s , rang i ng t yp i ca ll y fro m a few m illi m o l ar t o s evera l m o l ar. X-ray ab s orp ti on s pec t ro s copy ha s t rad iti ona ll y been s ubd i v i ded, accord i ng t o t wo energy reg i on s of a s pec t ru m : x-ray ab s orp ti on near-edge s t ruc t ure XANE S , wh i ch corres pond s t o t he near-edge reg i on t ha t ex t end s fro m t he t hre s h- o l d t o abou t 50 eV above t he edge, and EXA FS , wh i ch ext end s fro m energ i e s of abou t 50 t o m ore t han 1000 eV above t he edge. Si nce t he k i ne ti c energy of t he pho t oe l ec t ron i s l ow i n t he XANE S reg i on, m u lti p l e s ca tt er i ng M S effec t s are do m i nan t , t ha t i n t he par ti cu l ar ca s e of i on i c s o l u ti on s are m o s tl y due t o s ca tt er i ng pa t hway s be t ween a t o ms of t he fi r s t and s econd s o l va ti on s he ll s around t he ab s orber a t o m . In t he XANE S reg i on, bo t h geo m e t r i ca l and e l ec t ron i c de t a il s affec t t he s hape of a s pec t ru m , and t herefore t here i s no genera l , d i rec t , re l a ti on s h i p be t ween s pec t ru m and geo m e t ry a s i n t he ca s e of EXA FS .7Th i s i s why t he t echn i que i s of t en u s ed a s a fi ngerpr i n t for charac t er i z i ng t he ne i ghborhood of t he ab s orber a t o m .8 In t he EXA FS reg i on, t he s ca tt ered pho t oe l ec t ron ha s a h i gh k i ne ti c energy, s o t ha t s i ng l e back s ca tt er i ng proce ss e s are do m i nan t . However, m u lti p l e s ca tt er i ng pheno m ena m ay con t r i bu t e no ti ceab l y t o t he s pec t ru m , m ak i ng it s i n t erpre t ati on m ore d i f fi cu lt . In order t o ex t rac t i nfor m a ti on con t a i ned i n an EXA FS s pec t ru m , a nu m ber of s i m p li fy i ng a ss u m pti on s have t o be m ade. B ear i ng i n m i nd t ha t t he nu m ber and corre l a ti on of var i ab l e s needed i n t he EXA FS ana l y s i s i s of t en s uper i or t o t he i nfor m a ti on con t a i ned i n t he EXA FS s pec t ru m ,7,9–11 t he u s e of i nfor m a ti on der i ved fro m o t her s ource s , li ke co m pu t a ti ona l m e t hod s , i s of s pec i a l i n t ere s t . Th i s procedure ha s proven t o be s ucce ss fu l i n m any s t ud i e s of s t ruc t ura l e l uc i da ti on of s o li d and li qu i d s y s t e ms .12–17 The a i m of t h i s work i s t o ob t a i n t he bro m i de hydra ti on s t ruc t ure by m ean s of t he co m b i na ti on of exper i m en t a l i nform a ti on der i ved fro m XA S t echn i que s and t heore ti ca l da t a fro m co m pu t er s i m u l a ti on s . When dea li ng w it h t he s t ruc t ura l de s cr i p ti on of i on i c s o l u ti on s , t he pa tt ern s for t he ca ti on and an i on hydra ti on are far fro m s i m il ar, m o s tl y due t o t wo reas on s . Fi r s t of a ll , an i on env i ron m en t i s m a i n l y de t er m i ned by t he re s u lt an t force of t he co m pe titi on be t ween i on–d i po l e i naE l ec t ron i c m a il: s anchez@ s i m u l ux.u s .e s J OU R NAL O F C HE M I C AL P HY S I C S VOLU M E 119, NU M B E R 13 1 O C TO B E R 2003 66470021 - 9606/2003/119 ( 13 ) /6647/8/$20.00 © 2003 A m e ric an In s t i tute of P h ysics R eu s e of A I P P ub lis h i ng c ontent is s ub j e c t to the te rms : http s ://pub lis h i ng.a i p.o r g/autho rs / ri ght s- and - pe rmissi on s . D o w n l oaded to I P : 150.214.182.116 O n: W ed, 19 O c t 2016 14:53:39
t erac ti on s , wh i ch t end t o favor s y mm e t r i c hydrogen a t o ms arrange m en t s around t he an i on-oxygen ax i s , and hydrogen bond i ng t o t he an i on, wh i ch favor s an a s y mm e t r i c arrangem en t of it s s urround i ng wa t er m o l ecu l e s t o m ax i m i ze t he hydrogen bond i n t erac ti on. The s econd rea s on i s t ha t t he e l ec t ron den s it y d i s t r i bu ti on i s m ore expanded around t he nuc l eu s i n t he an i on ca s e wha t re s u lt s i n m ore i m por t an t fi r s t - and s econd-order per t urba ti on s w it h re s pec t t o t he l oca l e l ec t r i c fi e l d s . The s e t wo rea s on s an ti c i pa t e no ti ceab l e d i fference s i n t he s o l ven t organ i za ti on around ca ti on s and an i on s , i n par ti cu l ar of m onoa t o m i c or s i m p l e i on s . In add iti on, t he weak bro m i de–wa t er i n t erac ti on s i m p l y ex t re m e l y fa s t s o l ven t -exchange ra t e s of t he fi r s t s o l va ti on s he ll . A ll t he s e rea s on s m ake t he XA S s t udy of t he bro m i de hydra ti on qu it e d i fferen t fro m t he s t udy of h i gh l y charged ca ti on s prev i ou s l y carr i ed ou t by our group.18–25 Obv i ou s l y, t he s en s iti v it y of t he EXA FS t echn i que t o t he d i s order m ake s t he s t ruc t ura l ana l y s i s of t h i s s y s t e m m ore d i f fi cu lt . Thu s , t he u s e of t heore ti ca l i nfor m a ti on i s expec t ed t o s hed li gh t on it . S evera l au t hor s have prev i ou s l y exa m i ned t he bro m i de hydra ti on w it h t he he l p of t heore ti ca l t oo l s . Wa ll en e t a l .26 u s ed m o l ecu l ar dyna m i c s s i m u l a ti on s t o genera t e t heore ti ca l EXA FS s pec t ra w it h t he progra m F E FF and t he evo l u ti on a s a func ti on of pre ss ure and t e m pera t ure of EXA FS and XANE S s pec t ra wa s ana l yzed. D’Ange l oe t a l .27 s t ud i ed a l s o EXA FS s pec t ra w it h t he progra m GNXA S , and co m b i ned M D s i m u l ati on re s u lt s w it h a s hor t range m ode l d i s t r i bu ti on ba s ed on Ga mm a func ti on s t o fit t he EXA FS s pec t ru m . However, none of t he m ca l cu l a t ed t he bro m i de XANE S s pec t ru m . One of t he m o s t co mm on a ss u m p ti on s m ade t o ca l cu l a t e XA S s pec t ra i s t o reduce t he s y s t e m t o a s i ng l e s t ruc t ure. Never t he l e ss , t he con t r i bu ti on fro m m o l ecu l e s and arrangem en t s i n s t an t aneou s l y d i s t or t ed ha s an i m por t an t effec t on t he average s pec t ru m ,22,25 e s pec i a ll y i n l ab il e s t ruc t ure s li ke t he bro m i de i on hydra ti on. In t h i s s en s e, t he po ss i b ilit y of con s i der i ng s t a ti s ti ca l i nfor m a ti on m ake s t he ana l y s i s procedure ea s i er. A recen tl y deve l oped bro m i de–wa t er i n t erac ti on po t en ti a l , wh i ch i nc l uded t he po l ar i zab ilit y of par ti c l e s ba s ed on ab i n iti oda t a and who s e good behav i or ha s recen tl y been checked by co m pu t er s i m u l a ti on s ,28 w ill be e m p l oyed i n t h i s co m b i ned exper i m en t a l – t heore ti ca l s t udy. I t i s wor t h po i n t - i ng ou t t ha t t he t heore ti ca l s pec t ra are co m pu t ed fro m fi r s t pr i nc i p l e s , s i nce no e m p i r i ca l para m e t er s were i n t roduced ne it her i n t he i n t er m o l ecu l ar po t en ti a l s , nor i n t he co m pu t ati on of t he XA S s pec t ra. The XANE S s pec t ru m w ill be co m - pu t ed fro m a repre s en t a ti ve s e t of geo m e t r i e s ex t rac t ed fro m t he s t a ti s ti ca l t ra j ec t ory. W it h re s pec t t o t he EXA FS ana l y s i s , on one s i de t he M D po t en ti a l s ha ll be probed, on t he o t her s i de, de t a il s of t he s t ruc t ura l de t er m i na ti on w ill be i nve s ti - ga t ed. II. M E TH O D O L OG Y Theore ti ca l XANE S and EXA FS s pec t ra of t he B r K -edge 13 474 eV are ca l cu l a t ed by a co m b i na ti on of s t ati s ti ca l and quan t u m - m echan i ca l ca l cu l a ti on s . The s t udy of t he bro m i de hydra ti on wa s perfor m ed u s i ng t hree approache s : i co m pu t a ti on of XANE S s t ruc t ure s fro m quan t u m - m echan i ca ll y m i n i m i zed c l u s t er s w it hnwa t er m o l - ecu l e s (4 n7) ; ii co m pu t a ti on of XANE S s pec t ra t ak- i ng i n t o accoun t t he s t a ti s ti c s t hrough M on t e C ar l o s i m u l ati on s nap s ho t s ; iii ana l y s i s of EXA FS s pec t ra i n t wo way s : on t he one hand, t he exper i m en t a l s pec t ru m wa s co m pared t o a t heore ti ca ll y co m pu t ed one fro m M on t e C ar l o s i m u l a ti on s nap s ho t s ; on t he o t her hand, t he fitti ng procedure of t he EXA FS s pec t ru m wa s carr i ed ou t on bo t h s pec t ra, t he exper i m en t a l one and t he one co m pu t ed fro m M on t e C ar l o s i m u l a ti on s . The co m par i s on of t he fit s wa s carr i ed ou t w it h t he a i m of t e s ti ng t he va li d it y of t he m ode l s t ruc t ure s u s ed t o de s cr i be t he bro m i de hydra ti on. The exper i m en t a l B r K -edge XA S s pec t ra u s ed i n t h i s work for 0.3 M aqueou s s o l u ti on s of Y B r3were m ea s ured a t bea m li ne B L12 C of t he P ho t on F ac t ory i n T s ukuba, J apan. The r i ng curren t wa s 300 m A, and t he r i ng energy 2.5 GeV. A h i gh re s o l u ti on Si 311 channe l -cu t m onochro m a t or wa s u s ed. C a li bra ti on wa s carr i ed ou t w it h t he L 2-edge of a Au fo il 13734 eV . Da t a were co ll ec t ed i n t ran sm i ss i on m ode u s i ng i on i za ti on cha m ber s a s de t ec t or s . The quan t u m - m echan i ca ll y op ti m i zed s t ruc t ure s u s ed for ob t a i n i ng XANE S s pec t ra were t aken fro m a prev i ou s s t udy on t he m i cro s o l va ti on of t he bro m i de i on i n wa t er, m e t hano l , and ace t on it r il e.29 In t h i s s t udy, B r(H2O)nc l u s t er s (1 n8) were op ti m i zed a t t he B 3LY P l eve l w it h doub l eba s i s s e t s aug m en t ed w it h po l ar i za ti on and d i ffu s e func ti on s . St a ti s ti ca l i nfor m a ti on wa s ob t a i ned fro m M on t e C ar l o M C s i m u l a ti on s u s i ng fi r s t -pr i nc i p l e s bro m i de–wa t er i n t erac ti on po t en ti a l s recen tl y deve l oped by our group.28 F or t h i s po t en ti a l , t he M ob il e C harge Den s it y i n Har m on i c O s c ill at or s M ode l wa s e m p l oyed t o de s cr i be bro m i de an i on and wa t er s pec i e s , bo t h of t he m be i ng po l ar i zab l e, and t he wa t er fl ex i b l e. The wa t er–wa t er i n t erac ti on s were de s cr i bed by a M C DHO po t en ti a l prev i ou s l y de s cr i bed by t he C uernavaca group, M ex i co.30 The re li ab ilit y of t he re s u lt s der i ved fro m nu m er i ca l s i m u l a ti on s depend s cr iti ca ll y on t he po t en ti a l m ode l de s cr i b i ng t he i n t erac ti on s a m ong t he s it e s de fi n i ng t he s y s t e m . The i n t erac ti on po t en ti a l u s ed ha s a l ready been t e s t ed i n prev i ou s s t ud i e s ,28 where t he s i m u l a t ed s y s t e ms s how a good agree m en t w it h exper i m en t a l e s ti m a ti on s . The M C s i m u l a ti on s were carr i ed ou t w it h t he M C HANG progra m deve l oped by t he group of C uernavaca.31 The s y s t e m s i m ul a t ed con s i s t s of 1 B r 211 wa t er m o l ecu l e s i n t he NVT en s e m b l e a t 300 K u s i ng t he P OT–2 i n t erac ti on po t en ti a l fro m R ef. 28. P er i od i c boundary cond iti on s were app li ed, and l ong-range i n t erac ti on s were co m pu t ed by t he Ewa l d s u m m e t hod, i nc l ud i ng a t er m t o accoun t for t he ne t charge of t he s y s t e m .32,33 F ur t her de t a il s abou t t he M C s i m u l a ti on s are g i ven i n R ef. 28. K -Edge XANE S s pec t ra of B r i n wa t er were ca l cu l a t ed fro m 40 s nap s ho t s t aken every 120 K (K 103) con fi gurati on s of a M C s i m u l a ti on. The s i m u l a t ed XANE S s pec t ru m i s an average over t he s pec t ra of t he s nap s ho t s . XA S s pec t ra have been co m pu t ed w it h t he F E FF 8.10 progra m code34 deve l - oped by R ehr’ s group. The po t en ti a l ca l cu l a ti on s u s e t he Hed i n–Lundqv i s t s e l f-energy approx i m a ti on.35 A s e l fcon s i s t en t fi e l d procedure S C F wa s e m p l oyed. A 6.0 Å cu t - off rad i u s wa s cho s en for t he S C F t rea t m en t and for t he fu ll - m u lti p l e s ca tt er i ng pa t h s , en s ur i ng t he i nc l u s i on of t he s econd s o l va ti on s he ll i n t he co m pu t a ti on of t he s pec t ra. A m uf fi nti n po t en ti a l wa s app li ed w it h over l ap cr it er i a of 1.0 6648 J . C he m . P h ys ., V o l . 119, N o. 13, 1 O c tobe r 2003 M e rkli ng eta l . R eu s e of A I P P ub lis h i ng c ontent is s ub j e c t to the te rms : http s ://pub lis h i ng.a i p.o r g/autho rs / ri ght s- and - pe rmissi on s . D o w n l oaded to I P : 150.214.182.116 O n: W ed, 19 O c t 2016 14:53:39
t ouch i ng s phere s , 1.15 and 1.15 for B r, O, and H a t o ms , re s pec ti ve l y. The s e cr it er i a were de t er m i ned ad hoc bu t cou l d be j u s tifi ed w it h t he i on i c na t ure of t he ab s orb i ng a t o m . I t wa s found t ha t t he S C F rad i u s cou l d be l owered t o 5.0 Å w it hou t affec ti ng t he re s u lt s . A XANE S s pec t ru m ca l cu l a t ed fro m 200 s nap s ho t s t aken every 250 K con fi gura ti on s and S C F cu t off of 5.0 Å y i e l d s very s i m il ar re s u lt s . In prev i ou s s t ud i e s on ca ti on hydra ti on s t ruc t ure,12,22,24,25 t he i nc l u s i on of hydrogen a t o ms proved nece ss ary for ob t a i n i ng a rea li s ti c back s ca tt er i ng po t en ti a l bu t l ed t o a s en s i b l e degrada ti on of t he s pec t ru m when t hey were i nc l uded a s back s ca tt erer s . D i f fi cu lti e s are m a i n l y a ss oc i a t ed w it h an overe s ti m a ti on of t he back s ca tt er i ng con t r i buti on, bu t t h i s doe s no t affec t t he i r ro l e i n t he s e l f-con s i s t en t fi e l d ca l cu l a ti on of t he po t en ti a l .16 In t he ca s e of bro m i de hydra ti on s t ruc t ure, our re s u lt s u s i ng t he F E FF progra m i nd i - ca t ed t ha t t he s i m u l a t ed s pec t ra are m ore s i m il ar t o t he exper i m en t a l one s bo t h EXA FS and XANE S when hydrogen a t o ms are i nc l uded a s back s ca tt erer s . O t her au t hor s , who do no t u s e t he s a m e m e t hodo l og i ca l approach t o co m pu t e t he EXA FS s pec t ra, work w it h t he a ss u m p ti on of u s i ng hydrogen a t o ms a s back s ca tt erer s i n bo t h an i on and ca ti on s t ud i e s .17 The d i fferen t s t ra t egy hand li ng ca ti on and an i on hydra ti on, apar t fro m it s heur i s ti ca l j u s tifi ca ti on a s s een i n Fi g s . 3 and 4, cou l d be under s t ood by t he pre s ence of a c l o s e s t hydrogen s he ll around t he an i on. The bro m i de i on i nduce s t he pre s ence of a s e t of hydrogen a t o ms of fi r s t - s he ll wa t er m o l ecu l e s i n it s c l o s e s t v i c i n it y, wh i ch are found t o p l ay a s i gn ifi can t ro l e i n bo t h t he pho t oe l ec t ron s ca tt er i ng pheno m enon and t he de t er m i na ti on of e l ec t ron i c wave functi on s of t he bro m i de c l u s t er s . A s i m p lifi ed expre ss i on of t he EXA FS func ti on i s g i ven by6 k j N j kR j 2S0 2k F j k e 2 j 2k2e2R j / (k) s i n 2kR j j k, 1 where (k) i s t he t o t a l a m p lit ude a s a func ti on of t he vec t or kand t he s u mm a ti on goe s over a ll pa t h s j . N j i s t he coord i - na ti on nu m ber, R j i s ha l f of t he pa t h l eng t h, S0 2(k) i s t he a m p lit ude reduc ti on fac t or, F j (k) i s t he back s ca tt er i ng a m - p lit ude, j 2 i s t he s econd-order cu m u l an t known a s t he Debye–Wa ll er DW fac t or, (k) t he m ean free pa t h of t he pho t oe l ec t ron, and j (k) t he pha s es h i f t . In Eq. 1 , t he d i s order i s de s cr i bed by t he DW fac t or. None t he l e ss , when t heore ti ca l i nfor m a ti on der i ved fro m num er i ca l s i m u l a ti on s i s con s i dered, s t ruc t ura l fl uc t ua ti on s around t he an i on are i m p li c it w it h i n t he s a m p li ng of t he confi gura ti ona l s pace. Then, t he EXA FS func ti on can be a lt erna ti ve l y expre ss ed a s 22 k1 N s i s t ruc j pa t h s N j kR ij 2S0 2k F j k e 2R i j / (k) s i n 2kR i j j k, 2 where N s i s t he nu m ber of s t ruc t ure s con s i dered i n t h i s ca s e 10 000 s t ruc t ure s even l y s paced over 50 M ( M 106) M C con fi gura ti on s , i goe s over t he s t ruc t ure s der i ved fro m t he s t a ti s ti ca l s a m p li ng, and j over t he pa t h s . The ro l e p l ayed by t he exponen ti a l con t a i n i ng t he DW fac t or of Eq. 1 i s rep l aced by an average over s t ruc t ure s i n Eq. 2 . In order t o check t he convergence of t he re s u lt s , a co m pu t a ti on w it h 40000 s t ruc t ure s even l y s paced over 200 M con fi gura ti on s wa s a l s o perfor m ed. No d i fference s were found be t ween bo t h averaged s pec t ra. F ur t her exa m p l e s of t h i s averag i ng over s i m u l a t ed s pec t ra m ay be found i n R ef s . 12, 15, 26, 36, and 37. The cu t -off rad ii s e l ec t ed were t he s a m e a s t ho s e cho s en i n t he XANE S s pec t ra. The con s i dered pa t h s were re s t r i c t ed t o a l eng t h of up t o 7.0 Å and an a m p lit ude of a t l ea s t 9% of t he i n t en s it y of t he s hor t e s t B rH pa t h. St ruc t ura l para m e t er s were ob t a i ned fro m bo t h exper i - m en t a l and t heore ti ca l s pec t ra by m ean s of fitti ng a m ode l s t ruc t ure t o Eq. 1 . C on t ac t i on pa i r s cou l d be exc l uded, a s appeared a s we ll fro m t he ana l y s i s of t he Y K -edge.38 Thu s , t he m ode l s t ruc t ure cho s en i s t he hexahydra t ed c l u s t er cdep i c t ed i n Fi g. 1. EXA FS da t a were ana l yzed w it h t he F E FF IT 2.55 s of t ware package.39 The fitti ng of t he exper i m en t a l EXA FS s i gna l t o Eq. 1 i s ba s ed on a s t andard non li near l ea s t s quare s t echn i que we ll -e s t ab li s hed i n t he lit era t ure.40 III. R ES ULT S AND D I S CU SS I O N A . X AN ES s p ec t r a C a l cu l a t ed XANE S s pec t ra fro m a s er i e s of quan t u m - m echan i ca ll y m i n i m i zed s t ruc t ure s con t a i n i ng be t ween 4 and 7 wa t er m o l ecu l e s are d i s p l ayed i n Fi g. 2 a and co m pared w it h t he exper i m en t a l s pec t ru m . The geo m e t r i e s of t he s t ruct ure s s e l ec t ed are s hown i n Fi g. 1. The ca l cu l a t ed XANE S s pec t ra s how no ti ceab l e d i fference s , e s pec i a ll y w it h re s pec t t o t he re l a ti ve i n t en s it y of t he re s onance s . To t he con t rary, t he energy va l ue s of t he fi r s t t wo re s onance s wh i ch appear a t 13 472 and 13 489 eV, re s pec ti ve l y, are reproduced rea s onab l y we ll by a ll of t he m and are i n agree m en t w it h t he exper i m en t a l s pec t ru m . The co m par i s on w it h t he exper i m en t a l s pec t ru m s how s t ha t t he ra ti o of t he he i gh t s of t he re s onance s i s no t reproduced. Wha t i s m ore, t he m a i n re s onance of t he exper i m en t a l s pec t ru m i s w i der and h i gher t han t he one s of t he co m pu t ed s pec t ra. XANE S s pec t ra are genera ll y con s i dered t o be i n s en s i - ti ve t o d i s order, bu t charac t er i s ti c of t he coord i na ti on geo m - e t ry. In t he ca s e of bro m i de hydra ti on, where t he hydra ti on s t ruc t ure i s no t we ll de fi ned, t he s en s iti vene ss of t he XANE S s pec t ru m t o t he i n s t an t aneou s geo m e t r i e s can be ill u s t ra t ed on t hree s t ruc t ure s p i cked ou t of t he 40 con s i dered t o ca l cu- F IG. 1. Geo m e t r i e s of t he quan t u m - m echan i ca ll y op ti m i zed s t ruc t ure s u s ed t o ca l cu l a t e XANE S s pec t ra of Fi g. 2 a . 6649 J . C he m . P h ys ., V o l . 119, N o. 13, 1 O c tobe r 2003 B r o mi de h y d r at i on s t r u c tu r e R eu s e of A I P P ub lis h i ng c ontent is s ub j e c t to the te rms : http s ://pub lis h i ng.a i p.o r g/autho rs / ri ght s- and - pe rmissi on s . D o w n l oaded to I P : 150.214.182.116 O n: W ed, 19 O c t 2016 14:53:39
l a t e t he average s t a ti s ti ca l s pec t ru m Fi g. 2 b . On t he one hand, and un li ke t he ca s e of t he quan t u m - m echan i ca ll y op ti - m i zed c l u s t er s , s o m e of t he i nd i v i dua l s pec t ra exh i b it m ore i n t en s e re s onance s t han t he exper i m en t a l one. On t he o t her hand, t he i nd i v i dua l XANE S s pec t ra d i ffer m ore be t ween each o t her, t han t ho s e co m pu t ed fro m quan t u m - m echan i ca l s t ruc t ure s . Th i s s en s iti v it y of t he XANE S s pec t ra t o geom e t r i ca l change s fro m t he fl uc t ua ti on s of t he s y s t e m s uppor t s s t rong l y t he need t o i nc l ude s t a ti s ti ca l i nfor m a ti on i n t he s i m u l a ti on of XANE S s pec t ra of bro m i de s o l u ti on s . If a un i que m ode l s t ruc t ure had been t aken i n t o con s i dera ti on, t he d i s crepanc i e s be t ween t heore ti ca l and exper i m en t a l s pect ra wou l d have been a s cr i bed t o t he approx i m a ti on s con s i dered i n t he quan t u m co m pu t a ti on s needed t o genera t e t he s pec t ru m , and even t ua ll y, t he s e m i e m p i r i ca l approx i m a ti on s i n t roduced i n ob t a i n i ng s o m e of t he para m e t er s . In t he s a m e fi gure, t he co m pu t ed s pec t ra u s i ng t he s t ruc t ure s t runca t ed t o t he fi r s t s o l va ti on s he ll are s hown. The i nd i v i dua l s pec t ra are s t rong l y affec t ed by t he t runca ti on, wha t ill u s t ra t e s how XANE S i s s en s iti ve t o t he s o l va ti on beyond t he fi r s t s he ll , a s a l ready ob s erved i n t he ca s e of ca ti on hydra ti on.24,25 In Fi g. 3, t he co m par i s on of t he averaged ca l cu l a t ed s pec t ru m fro m s t a ti s ti ca l i nfor m a ti on and t he exper i m en t a l one i s s hown. B o t h t he po s iti on of t he t wo m a i n re s onance s and t he ra ti o of t he i r he i gh t s agree. A s expec t ed fro m t he qua lit a ti ve ana l y s i s of t he m e t hodo l ogy u s ed, t he w i d t h of t he m a i n re s onance of t he averaged s t a ti s ti ca l s pec t ru m i s m ore s i m il ar t o t he exper i m en t a l one t han t ha t ob t a i ned fro m a un i que s t ruc t ure. Never t he l e ss , t he fac t t ha t t he i n t en s it y of t he m a i n re s onance i ncrea s e s when a grea t nu m ber of s pec t ra der i ved fro m d i fferen t s t ruc t ure s i s i nc l uded, i s s t r i k i ng. In order t o s t udy t he s en s iti v it y of t he XANE S reg i on t o t he ab s orber-back s ca tt erer d i s t ance, t he XANE S s pec t ru m ha s been reca l cu l a t ed con s i der i ng t he s a m e po i n t s of t he confi gura ti ona l s pace, bu t i nc l ud i ng on l y s o l ven t m o l ecu l e s of t he fi r s t s o l va ti on s he ll . Accord i ng t o t he rad i a l d i s t r i bu ti on func ti on of t he M C s i m u l a ti on s ,28 a m o l ecu l e be l ong s t o t he fi r s t s o l va ti on s he ll when t he B rO d i s t ance i s l ower t han 4.1 Å. The averaged s pec t ru m ob t a i ned i s i nc l uded i n Fi g. 3 s hor t da s hed li ne and d i ffer s s li gh tl y fro m t he one con t a i n- i ng m ore t han one hydra ti on s he ll da s hed li ne . Th i s behav- i or i s d i fferen t fro m t he one found by our group i n t he s t udy of ca ti on hydra ti on.22,24,25 In t he l a tt er ca s e, s pec t ra ca l cul a t ed fro m s t ruc t ure s t ha t con t a i ned on l y one s o l va ti on s he ll pre s en t ed a m ore i n t en s e m ax i m u m , and a s li gh t d i s p l acem en t and narrow i ng of t he m a i n re s onance wa s ob s erved. The effec t of t he wa t er m o l ecu l e s beyond t he fi r s t hydra ti on s he ll on t he averaged XANE S s pec t ru m i s sm a ll i n t he ca s e of t he bro m i de hydra ti on, un li ke wha t i s ob s erved when co m pu ti ng t he effec t of h i gher s he ll s for i nd i v i dua l s naps ho t s . Thu s , it doe s no t s ee m po ss i b l e t o re t r i eve non t r i v i a l s t ruc t ura l i nfor m a ti on beyond t he fi r s t hydra ti on s he ll for t h i s an i on i n s t ud i e s of s o l u ti on che m i s t ry. The ca l cu l a t ed XANE S s pec t ru m u s i ng a cu t off rad i u s of 6.0 Å, where hydrogen a t o ms were no t i nc l uded a s back s ca tt erer s , i s a l s o p l o tt ed i n Fi g. 3 do tt ed li ne s . Th i s co m pu t ed s pec t ru m d i ffer s s i gn ifi can tl y fro m t he o t her s pec t ra i nc l uded i n t he fi gure. B . EX AF S s p ec t r a The co m par i s on of t he exper i m en t a l and t heore ti ca l EXA FS s pec t ra i n t er ms of (k)k2 i s d i s p l ayed i n Fi g. 4. The agree m en t be t ween bo t h s pec t ra i s s a ti s fac t ory, e s pec i a ll y con s i der i ng t ha t no e m p i r i ca l para m e t er s were i nc l uded i n t he co m pu t a ti on of t he t heore ti ca l s pec t ru m . When H a t o ms are exc l uded a s back s ca tt erer s , t he agree m en t i s found t o be far fro m s a ti s fac t ory, s uppor ti ng t he i m por t ance of hydrogen a t o ms i n t he XA S s pec t ra of t he ha li de aqueou s s o l u ti on s .41–44 A s h i gh li gh t ed i n t he s e prev i ou s work s , t h i s i s F IG. 2. Exper i m en t a l B r K -edge XANE S s o li d li ne and t he one s co m pu t ed fro m quan t u m - m echan i ca ll y op ti m i zed s t ruc t ure s s hown i n Fi g. 1. b Ind i - v i dua l XANE S s pec t ra co m pu t ed for d i fferen t s nap s ho t s , e it her re s t r i c t ed t o fi r s t hydra ti on s he ll da s hed li ne s or no t s o li d li ne s . F IG. 3. Exper i m en t a l B r K -Edge XANE S s o li d li ne and co m pu t ed fro m M C s i m u l a ti on s , e it her u s i ng fi r s t hydra ti on s he ll s hor t da s hed li ne , or up t o 6 Å l ong da s hed li ne . The hypo t he ti ca l ca s e where H a t o ms are no t i nc l uded a s back s ca tt erer s i s s hown i n do tt ed li ne s . 6650 J . C he m . P h ys ., V o l . 119, N o. 13, 1 O c tobe r 2003 M e rkli ng eta l . R eu s e of A I P P ub lis h i ng c ontent is s ub j e c t to the te rms : http s ://pub lis h i ng.a i p.o r g/autho rs / ri ght s- and - pe rmissi on s . D o w n l oaded to I P : 150.214.182.116 O n: W ed, 19 O c t 2016 14:53:39
due t o t he near l y li near a li gn m en t of a t o ms B rHO and a s a con s equence, t he hydrogen a t o m ha s a focu s i ng effec t for t he pho t oe l ec t ron wave. Fi gure 5 a d i s p l ay s t he exper i m en t a l s pec t ru m and it s fit u s i ng a s a m ode l s t ruc t ure c l u s t er ‘‘c’’ of Fi g. 1. In Fi g. 5 b , t he pha s e-correc t ed F our i er t ran s for m F T a l ong w it h it s fit are p l o tt ed. A s u mm ary of t he s t ruc t ura l para m e t er s ob t a i ned i n t he fit procedure i s s hown i n t he ‘‘exper i m en t a l ’’ fra m e of Tab l e I. A s s een i n t he t ab l e, t he va l ue s co m pare we ll w it h exper i m en t a l re s u lt s ob t a i ned by o t her au t hor s . M u lti e l ec t ron exc it a ti on s are expec t ed around 5, 7.3, and 8.22 Å 1.38 They can be de t ec t ed exper i m en t a ll y i f t he d i fference s pec t ru m be t ween exper i m en t a l s pec t ru m and fit exh i b it s peak s approx i m a t e l y a t t he i nd i ca t ed k-va l ue s . Th i s i s no t t he ca s e, and t herefore m u lti e l ec t ron exc it a ti on s were no t i nc l uded i n t he ana l y s i s . S o m e au t hor s s t udy i ng bro m i de conc l uded t ha t m u lti e l ec t ron exc it a ti on s were no t i m por t an t ,38,41 wh il e o t her s reached a h i gher e s ti m a t e of m u lti e l ec t ron exc it a ti on s and reco mm ended t he i r i nc l u s i on i n t he da t a ana l y s i s .45,46 The fac ilit y t o hand l e i ndependen t s t ruc t ura l i nfor m a ti on of s t a ti s ti ca l na t ure on t he s y s t e m under s t udy enab l e s u s t o under t ake a s econd EXA FS da t a ana l y s i s wh i ch corre s pond s t o t he co m pu t ed EXA FS s pec t ru m fro m t he M C s nap s ho t s da s hed li ne i n Fi g. 4 . Th i s t ype of s t ra t egy ha s a l ready been perfor m ed i n prev i ou s work s dea li ng w it h ca ti on hydra ti on.22,25 A t fi r s t s i gh t , t h i s cou l d be env i s aged a s an unna t ura l procedure t o ob t a i n t he s t ruc t ura l i nfor m a ti on, a s t he d i rec t exa m i na ti on of d i s t r i bu ti on func ti on s der i ved fro m M C s ee ms t o offer a m ore d i rec t way t o do it . However, t he a p r i o r i know l edge of t he s t ruc t ura l re s u lt s g i ve s u s an i dea l fra m ework t o check t he u s ua l da t a ana l y s i s procedure t o ext rac t t h i s i nfor m a ti on fro m an EXA FS s pec t ru m . Fi gure s 5 a and 5 b s how t he co m par i s on be t ween t he t heore ti ca ll y co m pu t ed s pec t ru m and it s fit . The fitt ed s pec t ru m and it s F T are i n qu it e good agree m en t w it h t he i r corre s pond i ng t heore ti ca l s pec t ra. F or t he purpo s e of t he fit , s i ng l e s ca tt er i ng pa t h s B rO and B rH and t he m u lti p l e s ca tt er i ng pa t h s B rHO and B rHOH were con s i dered. To reduce t he nu m ber of fit para m e t er s , a ll DW fac t or s for t he B rO and B rH pa t h s were a ss u m ed t o be i den ti ca l , a s s ugge s t ed by t he s i m u l a ti on va l - ue s ( B rO 20.055 i n Tab l e I and B rH 20.059). In t he ca s e of t he t heore ti ca l s pec t ru m , t he coord i na ti on nu m ber wa s fi xed t o t he m ean va l ue of t he s i m u l a ti on. S0 2, t he a m p lit ude reducti on fac t or, wa s s e t t o 1. The ‘‘ t heore ti ca l ’’ va l ue s g i ven i n Tab l e I are a ll ob t a i ned fro m t he M on t e C ar l o s i m u l a ti on re s u lt s . The ‘‘ M C s i m u l ati on’’ li ne g i ve s d i rec t re s u lt s co m pu t ed fro m t he s t a ti s ti ca l s i m u l a ti on. ‘‘ Fit t o t heore ti ca l s pec t ru m ’’ genera t e s an EXA FS s pec t ru m fro m t he s i m u l a ti on s nap s ho t s and fit s t h i s s pec t ru m , u s i ng or no t t he t h i rd order cu m u l an t . The s e t wo fit s run para ll e l t o t he ‘‘ Fit t o exper i m en t a l s pec t ru m ,’’ t he m a i n d i fference be i ng t ha t t he EXA FS func ti on ana l yzed i s t ha t ob t a i ned fro m t he s nap s ho t s of t he M C s i m u l a ti on. In t he t ab l e, t he re s u lt s of t wo fit s of t he t heore ti ca l s pec t ru m can be co m pared : t he fi r s t con s i der s on l y cu m ul an t s up t o s econd order, t he s econd i nc l ude s t he t h i rd order cu m u l an t , wh i ch i s con s t ra i ned w it h t he s econd order cu m ul an t va l ue by fi x i ng t he s kewne ss ra ti o3 / (2)3 / 2] t o a va l ue of 0.37. Th i s nu m ber ar i s e s fro m t he s i m u l a ti on a s exp l a i ned be l ow. The d i fference be t ween t he fitt ed B rO d i s - t ance s are w it h i n 0.1 Å due t o t he i n t roduc ti on of t he t h i rd order cu m u l an t . The s a m e procedure perfor m ed on t he exper i m en t a l s pec t ru m y i e l d s s i m il ar conc l u s i on s . C o m parab l e fi nd i ng s were ob t a i ned by D’Ange l oe t a l . i n a s t udy of brom i de i n m e t hano l .42 The d i s t ance i n t he fit t o t he co m pu t ed s pec t ru m i s 0.1 Å F IG. 4. C o m par i s on of t he exper i m en t a l s o li d li ne and co m pu t ed l ong da s hed li ne k2-we i gh t ed EXA FS func ti on. When H a t o ms are no t i nc l uded a s back s ca tt erer s , t he EXA FS func ti on wou l d be repre s en t ed by t he s hor t da s hed li ne. F IG. 5. a Exper i m en t a l EXA FS s pec t ru m and it s be s t fit w it h t he para m - e t er s i nc l uded i n Tab l e I. b P ha s e-correc t ed F our i er t ran s for m of t he s pect ru m and it s fit . 6651 J . C he m . P h ys ., V o l . 119, N o. 13, 1 O c tobe r 2003 B r o mi de h y d r at i on s t r u c tu r e R eu s e of A I P P ub lis h i ng c ontent is s ub j e c t to the te rms : http s ://pub lis h i ng.a i p.o r g/autho rs / ri ght s- and - pe rmissi on s . D o w n l oaded to I P : 150.214.182.116 O n: W ed, 19 O c t 2016 14:53:39
l arger t han t he corre s pond i ng exper i m en t a l one 3.44 ver s u s 3.34 . On one hand, t h i s d i s crepancy cou l d be a s cr i bed t o t he m o l ecu l ar po t en ti a l m ode l s . On t he o t her hand, t he d i s crepancy cou l d ar i s e fro m t he fitti ng procedure it s e l f a s d i s cu ss ed be l ow. C . An alysis of th e p r o ce du r e to obt ai n th e g e o m e t r ical p a r a m e t e r s f r o m a non r i g i d d is t r i but i on a r ound th e r e f e r e n ce a to m The EXA FS s pec t ru m of t he bro m i de an i on i n wa t er i s a concep t ua ll y i n t ere s ti ng ca s e for m e t hodo l og i ca l s t ud i e s becau s e t he s pec t ru m i s do m i na t ed by t he B rO back s ca tt er i ng con t r i bu ti on. The pre s en t s t udy corrobora t e s t ha t con t r i buti on s fro m m u lti p l e s ca tt er i ng pa t h s excep t ed t he ‘‘focu s - i ng’’ pa t h B rHO and s i ng l e s ca tt er i ng con t r i bu ti on s fro m a t o ms a t d i s t ance s l arger t han 5.0 Å p l ay a m i nor ro l e.26,27 The B rO d i s t r i bu ti on of d i s t ance s i s , however, qu it e broad and a s y mm e t r i c. Therefore, a m ode l s t ruc t ure s hou l d be va li d, i f it wa s ab l e t o reproduce e ss en ti a ll y t he probab ilit y d i s t r i bu ti on func ti on of t he B rO d i s t ance s . In t h i s s ec ti on, t he ana l y s i s w ill be perfor m ed exc l u s i ve l y on t he t heore ti ca ll y co m pu t ed s pec t ru m , s o t ha t exper i m en t a l con s i dera ti on s do no t need t o be t aken i n t o accoun t and t he d i s t r i bu ti on i s known. The a i m i s t o m on it or t horough l y how t he EXA FS de t er m i na ti on can reproduce t he geo m e t r i ca l d i s t r i bu ti on, wha t wa s u s ed rever s e l y t o genera t e t he EXA FS s pec t ru m . A s t r i k i ng fea t ure of t he s t ruc t ura l de t er m i na ti on by EXA FS s pec t ro s copy i s t ha t d i s t ance s are u s ua ll y s li gh tl y s hor t er t han expec t ed, and / or ob t a i ned by o t her t echn i que s .1 S uch a d i fference i s a l s o ob s erved be t ween t he d i s t ance obt a i ned by averag i ng t he M C s i m u l a ti on s nap s ho t s and t he fitt ed d i s t ance t o t he t heore ti ca l s pec t ru m for exa m p l e, R B rO 3.54 ver s u s 3.44 Å . In fac t , t he coord i na ti on d i s t ance ob t a i ned fro m t he EXA FS fit i s nu m er i ca ll y very c l o s e t o t he m ax i m u m of t he g( r ) func ti on s hown for i n s t ance i n R ef. 28. Th i s ob s erva ti on app li e s a l s o t o t he ca s e of t he s econd s he ll of R h3and C r3.24,25 In t he bro m i de s t udy, t he fitt ed DW fac t or s are on l y rough l y ha l f of t he va l ue found i n t he s i m ul a ti on 0.037 ver s u s 0.055 Å2), wh il e t he coord i na ti on nu m - ber i s m a i n t a i ned fi xed. The s y s t e m a ti c undere s ti m a ti on of d i s t ance s even when t he ‘‘correc t ’’ t h i rd order cu m u l an t i s u s ed enab l e s a s li gh t re fi ne m en t of t he e s ti m a t ed exper i m ent a l d i s t ance ba s ed on a t ran s ferab ilit y of t he d i fference obt a i ned fro m t he t heore ti ca l co m pu t a ti on. Th i s s hou l d be warran t ed i f t he s hape of t he d i s t r i bu ti on of t he s i m u l a ti on corre s pond s t o t he rea l one, R t heor RM C Si m u l a ti on R Fit t o t heor w it h3 3.54 3.44 Å 0.1 Å. Then, Rexp– t heor R Fit t o exp w it h3R t heor 3.34 0.1 Å. Therefore, our e s ti m a t e of t he average fi r s t s he ll B rO d i s - t ance fro m t he exper i m en t a l s pec t ru m i s 3.44 0.07 Å. In order t o fi nd ou t m ore abou t t he rea s on s for t h i s d i fference i n t he fi r s t hydra ti on s he ll , s evera l a tt e m p t s were m ade u s i ng on l y t he i nfor m a ti on abou t t he d i s t r i bu ti on i n t h i s s he ll . The s t ruc t ura l i nfor m a ti on u s ed i n a ll t he s e ca l cu l ati on s i s t ha t ob t a i ned fro m t he M C re s u lt s . Tab l e I g i ve s t he i n t egra ti on nu m ber, average B rO d i s t ance and it s DW fac t or (2). F or t he purpo s e of t he ana l y s i s , t he B rO fi r s t peak had t o be i s o l a t ed s o m ewha t arb it rar il y, s i nce t he d i s t r i bu ti on func ti on doe s no t drop t o zero. The cho s en cr it er i u m wa s t o u s e a s w it ch i ng func ti on, cen t ered around t he m i n i m u m of t he d i s t r i bu ti on func ti on, t ha t br i ng s t he d i s t r i bu ti on t o zero arc t angen tl y be t ween 3.8 and 4.2 Å. If a s t r i c t cu t off cr it er i u m i s cho s en i n s t ead, t he qua lit a ti ve conc l u s i on s drawn here are no t affec t ed. The reference d i s t r i bu ti on i n a ll t he s e ca l cu l a ti on s i s g i ven by t he probab ilit y d i s t r i bu ti on func ti on P D F , p l o tt ed i n Fi g. 6 s o li d li ne . Th i s func ti on i s d i rec tl y re l a t ed t o t he rad i a l d i s t r i bu ti on func ti on (g(R)), P D F R B rO N g s wR B rO R B rO 2, 3 where t he s uper s cr i p t ‘‘ s w’’ refer s t o t he s w it ched g(R) and N i s a nor m a li za ti on con s t an t . TA B LE I. B e s t fit d i s t ance s , Debye–Wa ll er fac t or s , and coord i na ti on nu m ber s around t he bro m i de an i on ob t a i ned fro m t he ana l y s i s of t he EXA FS s pec t ra and of t he M C s i m u l a ti on u s i ng 10 000 s nap s ho t s . N OR B rO / Å B rO 2 / Å23 / Å3 Exper i m en t Fit t o exper i m en t a l s pec t ru m 5.84a3.27 0.04 0.035 0.002 Fit t o exper i m en t a l s pec t ru m w it h30.37( B rO 2)3 / 2 5.84a3.34 0.03 0.034 0.002 0.0023 0.0002 R ef. 26 7.2 0.4 3.36 0.01 0.027 0.002 0.0014 0.0006 R ef. 27 6.9 3.34 0.04 0.0065 R ef. 50 6a3.19 0.016 R ef. 48 6a3.20 0.022 0.0034 R ef. 41 5.1 0.5 3.29 0.04 0.026 0.03 0.0020 0.0020 Theory M C s i m u l a ti on 5.84 0.3 3.54 0.01 0.055 0.005 0.0036 0.0002 Fit t o t heore ti ca l s pec t ru m 5.84a3.37 0.03 0.037 0.002 Fit t o t heore ti ca l s pec t ru m w it h30.37( B rO 2)3 / 2 5.84a3.44 0.03 0.036 0.002 0.0025 0.0004 Fit t o 1 s t - s he ll P D F 7.0 0.1 3.50 0.01 0.065 0.001 Fit t o 1 s t - s he ll P D F w it h36.9 0.1 3.54 0.01 0.058 0.001 0.0052 0.0005 a Fi xed va l ue. 6652 J . C he m . P h ys ., V o l . 119, N o. 13, 1 O c tobe r 2003 M e rkli ng eta l . R eu s e of A I P P ub lis h i ng c ontent is s ub j e c t to the te rms : http s ://pub lis h i ng.a i p.o r g/autho rs / ri ght s- and - pe rmissi on s . D o w n l oaded to I P : 150.214.182.116 O n: W ed, 19 O c t 2016 14:53:39
To fo ll ow t he s t ep s of an EXA FS da t a ana l y s i s , t he F our i er t ran s for m of t he P D F wa s u s ed a s i npu t for t he fit of t he fo ll ow i ng expre ss i on : 47 P D F k A exp i R B rOk2k2 / 2 i 3k3 / 6 4 wh i ch y i e l d s ‘‘effec ti ve cu m u l an t s .’’ Tab l e I g i ve s t wo s e t s of re s u lt s , con s i der i ng or no t t he t h i rd order cu m u l an t . ‘‘ Fit t o 1 s t s he ll P D F ’’ u s e s t he B rO d i s t r i bu ti on func ti on and fit s coord i na ti on nu m ber, d i s t ance, and DW fac t or i n a m anner de t a il ed i n t he nex t s ec ti on. ‘‘ Fit t o 1 s t s he ll P D F w it h3’’ add iti ona ll y fit s t he t h i rd order cu m u l an t . The t h i rd order cu m u l an t i s found t o be 0.0052 Å3 s ee Tab l e I , t ha t i s , 0.37( 2)3 / 2. C on s t ra i n i ng t he s kewne ss t o a va l ue of 0.37 i n a ll t he fit s en s ure s t ha t t he d i s t r i bu ti on s found are co m parab l y a s y mm e t r i ca l . Th i rd order cu m u l an t s fi na ll y d i ffer grea tl y be t ween au t hor s and m e t hod s u s ed. A d i rec t fit t o t he EXA FS s pec t ru m i s s ub j ec t t o h i gh uncer t a i n ti e s : Wa ll en e t a l .26 de t er m i ne a nega ti ve va l ue, wh il e Si m one t e t a l .41 ob t a i n a va l ue i n agree m en t w it h t ho s e ob t a i ned by o t her au t hor s u s i ng a lt erna t e approache s .48 D’Ange l oe t a l .27 obt a i n a s kewne ss of 0.81. W it h i n t he i r approach, however, h i gher order cu m u l an t s a l s o p l ay a s i gn ifi can t ro l e. In t h i s work, a d i rec t ca l cu l a ti on of 3fro m t he M C s i m u l a ti on y i e l d s 0.0036, t ha t i s a s kewne ss of 0.28, bu t i f we wan t t o neg l ec t h i gher order cu m u l an t s , it i s m ore i n t ere s ti ng t o m ake u s e of an effec ti ve va l ue. When s econd and t h i rd order cu m u l an t s are i nc l uded, t he average d i s t ance de t er m i ned i n t he fit of t he P D F i s equa l t o t he reference one 3.54 Å . The corre s pond i ng d i s t r i bu ti on i s p l o tt ed i n Fi g. 6 do tt ed li ne . When t he fit i nc l ude s on l y s econd order cu m u l an t s , t he d i s t ance de t er m i ned i s 3.50 Å l ong da s hed li ne . Tha t i s , a s hor t en i ng of t he d i s t ance i s ob s erved. Th i s va l ue i s qu it e d i fferen t fro m t he one ob t a i ned by fitti ng t o t he co m pu t ed EXA FS func ti on 3.44 or 3.37 Å, re s pec ti ve l y . Ano t her t e s t of t he m e t hod for t he de t er m i na ti on of t he s t ruc t ure li e s i n t he i nve s ti ga ti on of t he po ss i b l e ar ti fac t a s - s oc i a t ed t o t he genera ti on of t he EXA FS func ti on v i a t he F E FF/F E FF IT m e t hod fro m t he s nap s ho t s of t he M C s i m u l ati on. Two nu m er i ca l exa m i na ti on s have been de s i gned. The fi r s t con s i s t ed i n genera ti ng a t heore ti ca l EXA FS s pec t ru m ar i s i ng s o l e l y fro m s i ng l e s ca tt er i ng con t r i bu ti on s of t he fi r s t s he ll of oxygen a t o ms . The fit i nc l uded on l y B rO s i ng l e s ca t - t er i ng pa t h s and s econd order cu m u l an t s , y i e l d i ng a d i s t ance of 3.36 Å. The s econd exa m i na ti on wa s t he genera ti on of an EXA FS s pec t ru m ba s ed on m ode l s t ruc t ure s of t he geo m e t ry ‘‘c’’ of Fi g. 1, where t he po s iti on of t he wa t er m o l ecu l e s wa s s y mm e t r i ca ll y m od ifi ed be t ween 2.8 and 4.2 Å for t he B rO d i s t ance. The s e s pec t ra were we i gh t ed by t he P D F of t he fi r s t peak. Th i s t heore ti ca l s pec t ru m bear s a c l o s e re s e m b l ance t o t he one ob t a i ned by t he averag i ng of s pec t ra fro m M C s naps ho t s , and t he fit para m e t er s are very s i m il ar. Th i s i s a s t rong i nd i ca ti on t ha t t he rea s on for t he d i s crepancy i s no t due t o m u lti p l e s ca tt er i ng effec t s or t he pre s ence of hydrogen a t o ms c l o s e t o t he bro m i de, bu t i s ra t her t o be found i n t he s hape of t he d i s t r i bu ti on and t he i nab ilit y t o ad j u s t it w it h DW fac t or s . I V . C O NCLUD I N G R E MARK S XANE S and EXA FS s pec t ra of B r K -edge of bro m i de i n wa t er were ca l cu l a t ed fro m s i m u l a ti on s nap s ho t s and, i n t he ca s e of XANE S , quan t u m - m echan i ca ll y m i n i m i zed c l u s t er s were a l s o probed. Wherea s t he quan t u m - m echan i ca l c l u s t er s do no t co m pare we ll w it h exper i m en t a l da t a i n s o l u ti on, t he s e t of s i m u l a ti on da t a l ead s t o a good agree m en t . The d i s - crepanc i e s be t ween XANE S s pec t ra ca l cu l a t ed fro m quan t u m - m echan i ca l s t ruc t ure s and M C s i m u l a ti on s s ugge s t t he need for i nc l ud i ng s t a ti s ti ca l i nfor m a ti on i n t he co m put a ti on. In t h i s s en s e, it i s e ss en ti a l t o u s e a s t a ti s ti ca l d i s t r i - bu ti on of wa t er m o l ecu l e s around t he bro m i de an i on der i ved fro m a conden s ed m a tt er s y s t e m where i on–wa t er and wa t er–wa t er i n t erac ti on s p l ay a s i gn ifi can t ro l e. B ear i ng i n m i nd t ha t i n t er m o l ecu l ar po t en ti a l s were fitt ed t oab i n iti o ca l cu l a ti on s of s i m il ar l eve l t han t ho s e u s ed for t he s t ruc t ure op ti m i zed quan t u m - m echan i ca ll y, t he m a i n rea s on t o j u s ti fy t he d i fference m u s t be t he s t a ti s ti ca l fac t or s . In t he ca s e of t he EXA FS co m pu t a ti on s of bro m i de hydra ti on, t he m a i n con t r i bu ti on s are due t o s i ng l e s ca tt er i ng fro m t he fi r s t hydra ti on s he ll and, due t o t h i s rea s on, can be hand l ed rea li s ti ca ll y by a one-d i m en s i ona l d i s t r i bu ti on of m ode l s t ruc t ure s . Th i s i s a s i m p lifi ed p i c t ure of t he m ore rea li s ti c s ca tt er i ng pheno m enon where B rHO pa t h s and B rH pa t h s are be i ng con s i dered. The broad and a s y mm e t r i c d i s t r i bu ti on of B rO d i s t ance s i n t he s i m u l a ti on wa s de s cr i bed i n t er ms of an a s y mm e t ry para m e t er of 0.37 s kewne ss i n order t o be ab l e t o ob t a i n s econd and t h i rd order cu m u l an t s w it h l ow i nde t er m i na ti on s for t he fit t o t he EXA FS s pec t ru m . Th i s a s y mm e t ry para m - e t er wa s ob t a i ned by fitti ng t he B rO d i s t r i bu ti on of t he s i m ul a ti on i nks pace. The d i s crepanc i e s t ha t appear be t ween t he t heore ti ca l EXA FS s pec t ru m and it s fit u s i ng cu m u l an t s i nd i ca t e t ha t s y s t e ms w it h s i gn ifi can t geo m e t r i ca l d i s order i n t he c l o s er env i ron m en t of t he ab s orber a t o m , li ke t he fi r s t hydra ti on s he ll of t he bro m i de an i on, can hard l y be de s cr i bed by cum u l an t s li m it ed t o t h i rd or four t h order.49 Due t o t he charac t er i s ti c s of t he probab ilit y d i s t r i bu ti on func ti on, d i s t ance s ob t a i ned by a conven ti ona l fit procedure t o t he EXA FS s pect ru m are ob s erved t o be c l o s e t o t he m ax i m u m of t he rad i a l d i s t r i bu ti on func ti on when s o l e l y DW fac t or s are con s i dered, F IG. 6. B rO probab ilit y d i s t r i bu ti on func ti on s P D F fro m M C s i m u l a ti on s o li d li ne , fro m fit t o t heore ti ca l EXA FS s pec t ru m w it h3da s hed , and fro m t wo fit s t o t he M C P D F: w it h cu m u l an t s up t o 2 l ong da s hed and up t o 3 do tt ed . 6653 J . C he m . P h ys ., V o l . 119, N o. 13, 1 O c tobe r 2003 B r o mi de h y d r at i on s t r u c tu r e R eu s e of A I P P ub lis h i ng c ontent is s ub j e c t to the te rms : http s ://pub lis h i ng.a i p.o r g/autho rs / ri ght s- and - pe rmissi on s . D o w n l oaded to I P : 150.214.182.116 O n: W ed, 19 O c t 2016 14:53:39
and a l s o fa ll s hor t when t h i rd order cu m u l an t s are i n t roduced. The s y s t e m a ti c undere s ti m a ti on of d i s t ance s even when t he ‘‘correc t ’’ t h i rd order cu m u l an t i s u s ed enab l e s a s li gh t re fi ne m en t of t he e s ti m a t ed exper i m en t a l d i s t ance. If we a ss u m e t ha t t he d i s t r i bu ti on of d i s t ance s fro m t he s i m ul a ti on i s correc t , we ob t a i n t ha t t he average B rO d i s t ance de t er m i ned i n t he exper i m en t a l fit 3.34 Å i s undere s ti m a t ed by 0.1 Å. Therefore, our be s t gue ss of t he exper i m en t a l d i s - t ance i s 3.44 0.07 Å. A co m b i na ti on of exper i m en t a l and t heore ti ca l da t a ana l y s i s g i ve s w i der po ss i b iliti e s t o i nve s ti - ga t e t he geo m e t r i ca l proper ti e s of s y s t e ms pre s en ti ng ill - de fi ned s t ruc t ura l pa tt ern s . ACKN O WL E D G M E NT S The au t hor s t hank Dr. A. M un ˜ oz- P a ´ez for her exper i - m en t a l co ll abora ti on and her he l pfu l d i s cu ss i on s . S ugge s - ti on s fro m t he referee have i m proved t h i s paper. P a t r i ck M erk li ng w i s he s t o t hank t he J un t a de Anda l uc ı ´a and t he Deu t s che F or s chung s ge m e i n s chaf t for fi nanc i a l s uppor t . Exper i m en t a l s pec t ra were m ea s ured under propo s a l 95G-215 of t he P ho t on F ac t ory, T s ukuba, J apan. F undac i o ´n R a m o ´n Arece s XI C oncur s o Nac i ona l i s acknow l edged for fi nanc i a l s uppor t . 1H. Oh t ak i and T. R adna i , C he m . R ev. Wa s h i ng t on, D. C .93, 1157 1993 . 2Y. M arcu s ,Ion So l va ti on W il ey, C h i che s t er, 1986 . 3D. T. R i chen s , T he C hem i s t r y o f Aqua Ion s W il ey, C h i che s t er, 1997 . 4 M . M ag i n i , G. L i cher i , G. P a s ch i na, G. Pi cca l uga, and G. 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