First- and Second-Order Thermal Diffuse Scattering (TDS) Intensity in Molecular Crystals: Influence on Crystal Structure Parameters
Abstract
First- and second-order thermal diffuse scattering (TDS) intensities are calculated in the long-wave approximation allowing for dispersion (LWD) in monoclinic phenothiazine from polarization vectors and lattice-mode frequencies obtained from lattice dynamical calculations within the harmonic approximation and the external Born-von K~irmfin formalism using an atom-atom potential function in the form V(r) =-A/r6+ B exp (-Cr). The influence of firstand second-order TDS intensity on electronic density maps is analysed and compared. Least-squares refinements of positional and thermal parameters are carried out in different ranges of sin 0/A taking into account both first- and second-order TDS contributions and the results are discussed.
Full text
491
Ac a C ys . (1985). A41, 491-494
Fi s - and Second-O de The mal Di use Sca e ing (TDS) In ensi y in Molecula C ys als:
In luence on C ys al S uc u e Pa ame e s
BY A. CR~ADO, A. CONDE AND R.
MARQUEZ
Depa amen o de Op ica y Secci6n de F sica Cen o Coo dinado del CSIC, Uni e sidad de Se illa, Spain
(Recei ed
24
July
1984;
accep ed
22
Ap il
1985)
Abs ac
Fi s - and second-o de he mal di use sca e ing
(TDS) in ensi ies a e calcula ed in he long-wa e
app oxima ion allowing o dispe sion (LWD) in
monoclinic pheno hiazine om pola iza ion ec o s
and la ice-mode equencies ob ained om la ice
dynamical calcula ions wi hin he ha monic app oxi-
ma ion and he ex e nal Bo n- on K~i m in o malism
using an a om-a om po en ial unc ion in he o m
V( ) =-A/ 6+ B exp (-C ). The in luence o i s -
and second-o de TDS in ensi y on elec onic densi y
maps is analysed and compa ed. Leas -squa es e ine-
men s o posi ional and he mal pa ame e s a e
ca ied ou in di e en anges o sin 0/A aking in o
accoun bo h i s - and second-o de TDS con ibu-
ions and he esul s a e discussed.
In oduc ion
In p e ious pape s (C iado, Conde & M~i quez,
1985a, b) we epo ed a compu a ional p ocedu e o
calcula e i s - and second-o de he mal di use sca -
e ing in ensi y o molecula c ys als om a la ice
dynamical calcula ion, using he ex e nal Bo n-yon
K i m~in o malism in he ha monic app oxima ion.
An a om-a om po en ial- unc ion model was u ilized
as a sum o pai wise con ibu ions in he o m V( ) =
-A/ 6 + B exp (- C ) and he p ocedu e was applied
o monoclinic pheno hiazine. Fi s -o de co ec ion
ac o s o in eg a ed B agg in ensi ies due o he mal
di use sca e ing (TDS) in ensi y we e calcula ed
wi h he ull la ice dynamical o mulae and in he
long-wa e (LWD) (Bo n & Huang, 1968) app oxima-
ion allowing o dispe sion and bo h esul s we e
p ac ically iden ical. The in luence o i s -o de TDS
in ensi y on elec onic densi y maps was s udied; he
main con ibu ion was a posi i e addi ional densi y
concen a ion a ound he a omic posi ions. A leas -
squa es p ocess was ca ied ou o check he in luence
o i s -o de TDS in ensi y upon a iable pa ame e s;
he main in luence was ound o e he he mal pa am-
e e s, which unde wen a dec ease wi h espec o
hei ue alue.
Calcula ions ha e al eady been pe o med
(Helmold & Vos, 1977) on he in luence o he i s -
0108-7673/85/050491-04501.50
o de TDS con ibu ion upon s uc u al pa ame e s
and ou pu pose he e is o s udy he in luence o he
second-o de one.
Basic heo y
Fi s -o de TDS in ensi y has been calcula ed using
he LWD app oxima ion in which he exp ession o
he in ensi y a a poin S o he ecip ocal space such
ha S = G
-q, whe e G = 2~ H and H is a
ecip ocal-
la ice poin , is gi en by (Coch an, 1963; Coch an &
Pawley, 1964; Bo n & I-Iuang, 1968)
dll(S = G-q)/dq
= NS 2 F(G) 2 ~ [Ej(q)/w~(q)]{s. eLW(qj)}2, (1)
Jac
whe e N is he numbe o uni cells in he c ys al,
jac
s ands o he di e en acous ic modes wi h wa e
ec o q, o~j(q) is he angula equency o mode (q j),
Ej(q) is i s ene gy, s is a uni ec o along S, F(G)
is he B agg s uc u e ac o and
eLW(qj)
is he
pola iza ion ec o o mode (q j) in he LW app oxi-
ma ion; i can be ound by sol ing he eigen alue
equa ion (Bo n & Huang, 1968; Ma adudin,
Mon oll, Weiss & Ipa o a, 1971)
D(q)U(q) = o~2(q)U(q), (2)
whe e D(q) is he dynamical ma ix.
The second-o de TDS in ensi y should be calcu-
la ed in he exac la ice dynamical p ocedu e bu
compu ing imes a e p ohibi i e. Because o his, we
ha e also adop ed he LWD app oxima ion o calcu-
la ing second-o de TDS in ensi y. Wi h his app oxi-
ma ion, he exp ession o i is
dI2(S = G-q)/dq
n 2 2
-(S2/2)IF(G)I2E E E
{[Ej,(q )Ej,,(q
)/o)j,(q )o)j,,(q
)]
q' Jac Jae
×[s. eLW(q'j')s, eLW(q'~]")]2}, (3)
whe e q' uns o e all he allowed wa e ec o s inside
he B illouin zone and q = q'+q". This sum akes a
long compu ing ime o a c ys al o a ini e size and,
as we a e only in e es ed in he beha iou o densi y
maps and s uc u al pa ame e s wi h espec o he
© 1985 In e na ional Union o C ys allog aphy
492 FIRST- AND SECOND-ORDER THERMAL DIFFUSE SCATTERING
ac o S 4, we ha e adop ed a second simpli ying
app oxima ion (Ramachand an & Woos e , 1951),
which consis s o a heo e ical e alua ion o he sum
(in eg al o a la ge c ys al) o e q' assuming a linea
ela ion coj(q) =
~q
(LW app oxima ion), whe e j is
he eloci y o he wa e, which is assumed o be
independen o he di ec ion o q. The ac o in ol ing
he pola iza ion ec o s is eplaced wi h a cons an
ac o a he alues ha minimize he p oduc
2 , z ,, q, q,,
oj,(q)wj,,(q
)" = =q/2"
and he in eg al o e he
B illouin zone is ex ended o in ini y. Wi h hese
app oxima ions, he exp ession o second-o de TDS
in ensi y o poin s su icien ly nea he ecip ocal-
la ice poin s is ound o be, a high empe a u es
[ E)(q) = KsT]:
dI2(S = G-q)/dq
= ( NVcS4
q3/16)(K8
T)2] F(G)I
2
× ~ ~ {[s. eLW(qj')s, eLW(qj")]2/ O],(q) o],,(q)},
J~cJae
(4)
whe e V~ is
he
uni -cell olume.
Me hod o
calcula ion
We ha e pe o med ou calcula ions wi h monoclinic
pheno hiazine and he condi ions o calcula ing he
co ec ion ac o s o B agg in ensi ies due o TDS
con ibu ion we e he same as hose adop ed o
i s -o de calcula ions (C iado, Conde & M i quez,
1985a), assuming a B agg-peak symme ic scanning
olume o pa allelepipedic shape cen ed on he
ecip ocal-la ice poin s, each edge
7/25
o he co e-
sponding basic ecip ocal ec o . Pola iza ion ec o s
and wa e equencies ha e been ob ained om la ice
dynamical calcula ions.
In o de o s udy he in luence ha second-o de
TDS in ensi y has o e densi y maps we ha e con-
side ed he c ys al con igu a ion om which we ha e
calcula ed la ice dynamics and B agg co ec ion ac-
o s as he ue one. The in ensi ies measu ed in a
eal expe imen would hen be ob ained by adding
o he calcula ed B agg in ensi ies he TDS calcula ed
con ibu ion a 300 K as
I~xp(G) = IB~Gc(G){1 + a2(G)}, (5)
whe e
a2(G) = I2(TDS, G)/IBRAGG(G), (6)
and he in luence on densi y maps would be ob ained
by means o a di e ence Fou ie syn hesis wi h
coe icien s Fexp(G)- Fca,(G).
In his way we ha e calcula ed co ec ion ac o s
and 'expe imen al' in ensi ies o 1026 independen
e lec ions wi h sin 0/A <0.6 A,-'. A di e ence
Fou ie syn hesis (p og am
FOURR
; S ewa ,
Kundell & Baldwin, 1970) has been pe o med, whose
$~" N,"
;C :
1A
(a) (b)
Fig. 1. (a) Second-o de di e ence densi y map. Con ou s a e
d awn a in e als o 0.012 e/1. -2. (b) Fi s -o de di e ence
densi y map. Con ou s a e d awn a in e als o 0.06 e/~-2.
p ojec ion o e a plane pe pendicula o b is shown
in Fig. l(a), whe e only posi i e densi y egions a e
ep esen ed, and he black poin s co espond o he
' ue' a omic posi ions. In o de o make he com-
pa ison easie we ep oduce in Fig. 1 (b) he di e ence
densi y map ob ained wi h he same e lec ions bu
conside ing only he i s -o de con ibu ion (C iado,
Conde & M~i quez, 1985a). Bo h maps p esen a zone
o nega i e densi y su ounding each posi i e peak,
a esul ha is ound o co espond o an unde alu-
a ion o he mal c ys allog aphic pa ame e s
(Bue ge , 1960). As in he i s -o de case, posi i e
densi y peaks in he second-o de map a e si ua ed
a ound he ' ue' a omic posi ions and he e o e i
mus be expec ed ha he second-o de TDS con i-
bu ion will no al e e y much he posi ional pa am-
e e s ob ained in a s uc u al analysis. Ne e heless,
dis o ions o he peaks a e g ea e han in he i s -
o de case, especially nea he hea ie a om (S)
indica ing ha he second-o de TDS e ec is mo e
equally dis ibu ed be ween posi ional and he mal
pa ame e s han in he i s -o de case. Whe eas in
he i s -o de map peaks a ound H a oms a e p ac i-
cally non-exis en , we ha e de ec ed small peaks nea
H-a om posi ions, which may well co espond o an
al e a ion o he H-a om densi y, al hough hey may
be a esidual elec onic densi y as well.
Leas -squa es e inemen
To e i y he conclusions deduced abo e we ha e
ca ded ou a leas -squa es p ocess (p og am
CRYLSQ;
S ewa , Kundell & Baldwin, 1970) wi h
he 'expe imen al' in ensi ies a 300 K om he ' ue'
s uc u e and calcula ed la ice dynamical he mal
pa ame e s, keeping he he mal pa ame e s o H
a oms ixed. Posi ional and he mal pa ame e s we e
e ined oge he wi h K, a scale ac o de ined by
E6{[Fexp(G)l-lFca,(G)l/K} 2,
and h ee di e en
A. CRIADO, A. CONDE AND R. M/~RQUEZ 493
Table 1.
Resul s o leas -squa es e inemen s
.a. ull angle; 1.o. low o de ; h.o. high o de .
A and
A U.
a e he a ia ions in posi ional and he mal pa ame e s.
Fi s o de Second o de
~(G)(% )
A *(X104/~)
IA [(H)(xl0 3 A)
-A Uu( xl04 A 2)
--A U22(x104 A 2)
--A U33(X104 A 2)
R (%)
g~
.a. 1.o. h.o. .a. 1.o.
<80 <37 37-107 <40 <10
5-10 4-8 11-18 5-9 4-7
5-8 3-6 18-38 19-40 8-13
55-57 56-58 48-50 21-24 14-16
51-55 52-54 44-46 7-13 5-7
47-51 48-51 41-45 15-19 10-13
8.4-0.4 6.4-0.3 21.4-0.2 2.3-0.6 1-0-0.2
1.005 1.003 1.047 0.992 0.996
* A e age and maximum de ia ions.
Ini ial and inal ag eemen ac o s.
Final scale ac o .
h.o.
10-77
9-18
60-180
56-58
37-41
47-52
1.2-0.7
0.904
anges ha e been chosen wi h 1026 e lec ions in each
one: a ull-angle e inemen up o sin 0/A = 0.9 A -1,
a low-o de e inemen up o sin 0/) = 0.6/~-1 and
a high-o de one wi h 0.7<sin 0/h<l.0/~ -1. A
simila p ocess has been pe o med wi h i s -o de
con ibu ions and we compa e he main esul s in
Table 1. Va ia ions in posi ional pa ame e s o non-H
a oms a e o he same o de o accu acy in c ys allo-
g aphic wo k and a e alike o i s and second o de
in spi e o he smalle magni ude o second-o de
co ec ion ac o s. On he con a y, a ia ions o
H-a om coo dina es a e g ea e o second-o de
e inemen s, a esul ha ag ees wi h he conclusions
d awn om he di e ence Fou ie maps.
The mal pa ame e s p esen a dec ease o bo h
i s - and second-o de e inemen s. Fo i s o de
he pa ame e s a e smalle a high angles because
co ec ion ac o s a e la ge and 1 + a~(G) canno be
adjus ed o a empe a u e ac o wi h exponen ial
o m as well as in ull angle o low-o de cases.
Maximum de ia ions o he mal pa ame e s a e e y
close o a e age, indica ing ha he e ec is mo e
impo an o he ansla ional igid-body enso T
han he lib a ional L. This seems o con i m he
p oposal om he ecen p ojec epo on he com-
pa ison o s uc u al pa ame e s o oxalic acid dihy-
d a e ob ained in a ious labo a o ies (Coppens
1984), which shows he main disc epancies a e in
he mal pa ame e s, p incipally on T enso s, which
a e p obably due o TDS con ibu ions. The non-
ans e abili y o he mal pa ame e s om high-o de
o low-o de e inemen mus be aken in o accoun
when calcula ing he mal pa ame e s in accu a e elec-
onic densi y s udies (Dam, Ha kema & Feil, 1983)
om e lec ions a high alues o sin 0/A whe e he
in luence o bonding e ec s o e he mal pa ame e s
is minimized when we use a sphe ical-a om model.
In he case o second-o de e inemen s we ob ain
di e en alues o he mal pa ame e s depending on
he chosen ange o sin 0/A because 1 + ce2(G) does
no adjus a all o a empe a u e- ac o unc ional
o m, e en a low angles; and he pa e n is he in e se
o he i s -o de case: he dec ease is la ge in high-
o de e inemen s. In he same way, a ia ions in he
scale ac o a e opposi e in i s - and second-o de
cases.
Concluding ema ks
Posi ional pa ame e s a e mo e sensi i e o second-
han o i s -o de TDS in ensi y, especially hose
conce ning hyd ogen a oms. The mal pa ame e s a e
di e en o each ange when he second-o de TDS
con ibu ion is no sub ac ed om measu emen s
and, al hough i s in luence is small o low-angle
e lec ions, i is compa able o ha o i s -o de o
high-o de e inemen s. So expe imen al in ensi ies
should be co ec ed o second-o de con ibu ions
when calcula ing accu a e he mal pa ame e s om
high-o de e inemen s, al hough he bes emedy is
o wo k a as low a empe a u e as possible.
Final ag eemen ac o s R a e equal o la ge o
second-o de e inemen s, al hough ini ial ac o s a e
much smalle han i s -o de ones, indica ing a
poo e abso p ion o TDS con ibu ions in leas -
squa es p ocesses.
As a inal o e all conclusion we can say ha e en
when he second-o de con ibu ion is smalle han
he i s -o de one, i s e ec s may be compa able o
i s -o de ones and a e mo e equally dis ibu ed
among di e en a iable pa ame e s and a e no p e-
dominan ly concen a ed on he mal pa ame e s,
which is he case o he i s -o de con ibu ion.
This wo k has been suppo ed in pa by he
Spanish Go e nmen h ough he 'Comisi6n Aseso a
de In es igaci6n Cien ica y T6cnica'.
Re e ences
BORN, N. & HUANG, K. (1968).
Dynamical Theo y o C ys al
La ices.
Ox o d: Cla endon.
BUERGER, M. J. (1960).
C ys al-S uc u e Analysis.
New Yo k:
Wiley.
494 FIRST- AND SECOND-ORDER THERMAL DIFFUSE SCATTERING
COCHRAN, W. (1963).
Rep. P og. Phys.
26, 1-45.
COCHRAN, W. & PAWLEY, G. S. (1964).
P oc. IL Soc. London,
280, 1-22.
COPPENS, P. (P ojec Repo e ) (1984).
Ac a C ys .
A40, 184-195.
CRIADO, A., CONDE, A. & MARQUEZ, R. (1985a).
Ac a C ys .
A41, 158-163.
CRIADO, A., CONDE, A. & M,~RQUEZ, R. (1985b).
Ac a C ys .
A41,316-320.
DAM, J., HARKEMA, S. & FELL, D. (1983).
Ac a C ys .
B39,
760-768.
HELMHOLDT, R. B. & VOS, A. (1977).
Ac a C ys .
A33, 38-45.
MARADUDIN, A. A., MONTROLL, E. W., WEISS, G. H. &
IPATOVA, I. P. (1971).
Theo y o La ice Dynamics in he Ha -
monic App oxima ion.
New Yo k: Academic P ess.
RAMACHANDRAN, G. N. & WOOSTER, W. A. (1951).
Ac a C ys .
4, 335-344.
STEWART, J. M., KUNDELL, F. A. & BALDWIN, J. C. (1970). The
XRAY
70 sys em. Compu e Science Cen e , Uni . o Ma y-
land, College Pa k, Ma yland.
Ac a C ys .
(1985). A41, 494-500
Calcula ion o Elas ic Cons an s by he Me hod o C ys al S a ic De o ma ion*
BY MICHELE CATTI
Dipa imen o di Chimica Fisica ed Ele ochimica, Uni e si d di Milano, ia Golgi
19, 20133
Milano, I aly
(Recei ed 7 No embe
1984;
accep ed
22
Ap il
1985)
Abs ac
The con ibu ion o homogeneous la ice de o ma-
ions (neglec ing in e nal s ains) o elas ic p ope ies
o c ys als wi h iclinic o highe symme y is
examined. The de o med la ice cons an s a e
exp essed as unc ions o he componen s o he ini e
Lag angian s ain enso , and hei de i a i es a e
calcula ed. Thus equa ions a e ob ained ha ela e
he second-o de elas ic cons an s o i s and second
pa ial de i a i es o he s a ic c ys al ene gy wi h
espec o uni -cell pa ame e s. Wi h he assump ion
o a wo-body Bo n- ype in e a omic po en ial, he
ene gy de i a i es we e calcula ed analy ically, and
a igid-body app oxima ion was in oduced o
accoun o molecula g oups in he c ys al s uc u e.
Tes compu a ions o elas ic cons an s we e pe -
o med o MgF2 ( u ile- ype), benzene and naph-
halene, using li e a u e po en ial pa ame e s op i-
mized on s uc u al da a; esul s a e discussed wi h
espec o adequacy o he po en ials and o he
app oxima ions o he model used.
In oduc ion
The semi-empi ical modelling o in e a omic and
in e molecula o ces in c ys als has been de eloped
in ensi ely in ecen yea s, in o de o ep oduce and
possibly p edic a ious chemical-physical p ope ies
by compu e simula ions (Ca low & Mack od , 1982).
In he pas , his wo k was mainly pe o med by i ing
* A p elimina y accoun o pa o his wo k was p esen ed a
he XIII h In e na ional Cong ess o C ys allog aphy, Hambu g,
Fede al Republic o Ge many, 9-18 Augus 1984 (Ca i, 1984).
0108-7673/85/050494-07501.50
he po en ial pa ame e s o s uc u al p ope ies only,
so ha he leas -ene gy a omic con igu a ion
app oached he expe imen al one as closely as poss-
ible (Busing, 1970; Ki aigo odskii, 1973; Williams,
1981); such po en ials we e hen p oposed o de e -
mining unknown c ys al s uc u es by minimum-
ene gy sea ch. In a emp s o ex end he modelling
o o he physical p ope ies o c ys als, elas ic
beha iou and ib a ional spec oscopic equencies
a e usually conside ed, as hey a e ela ed o he slope
changes o he ene gy hype su ace (in he space o
a omic posi ion ec o s) a i s minimum poin .
Howe e , ib a ional p ope ies a e accoun ed o by
dynamical me hods only, whe eas he c ys al elas-
ici y can be ela ed bo h o la ice dynamics and o
he s a ics o equilib ium a omic con igu a ion. In he
o me case a mic oscopic c ys al de o ma ion chang-
ing wi h ime is examined, h ough a omic oscilla ions
du ing he p opaga ion o an elas ic wa e (long-
wa eleng h acous ic ib a ion mode); in he la e , a
mac oscopic s a ic de o ma ion o he c ys al is
assumed, implying a omic shi s om equilib ium
posi ions ha a e cons an wi h ime. In bo h cases
he elas ic p ope ies exp ess he co ela ion be ween
c ys al s ain and applied s ess. The i s ull heo y
on he subjec was de eloped by Bo n & Huang
(1954).
A p e ious pa ial app oach (Ca i, 1981) is ex en-
ded and he calcula ion o elas ic cons an s by he
me hod o c ys al s a ic de o ma ion is conside ed
he e. The con ibu ion o ex e nal s ains will be aken
in o accoun by de i ing equa ions ha ela e he
elas ici y enso componen s o i s and second pa -
ial de i a i es o he c ys al s a ic ene gy wi h espec
o la ice cons an s, calcula ed a ze o s ain, o i-
O 1985 In e na ional Union o C ys allog aphy