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cancers Review Urinary Biomarkers in Bladder Cancer: Where Do We Stand and Potential Role of Extracellular Vesicles Manuel Castanheira de Oliveira 1,2,3,4,* , Hugo R. Caires 1,5 , Maria J. Oliveira 1,2,6 , Avelino Fraga 1,2,3,4 , M. Helena Vasconcelos 1,5,7 and Ricardo Ribeiro 1,2,8,9,* 1i3S—Instituto de Investigação e Inovação em Saúde, University of Porto, 4200-135 Porto, Portugal; [email protected] (H.R.C.); [email protected] (M.J.O.); [email protected] (A.F.); [email protected] (M.H.V.) 2Tumor & Microenvironment Interactions Group, INEB - Institute of Biomedical Engineering, University of Porto, 4200-135 Porto, Portugal 3Department of Urology, Centro Hospitalar e Universitário do Porto, 4099-001 Porto, Portugal 4ICBAS-Institute of Biomedical Sciences Abel Salazar, University of Porto, 4050-313 Porto, Portugal 5Cancer Drug Resistance Group, IPATIMUP - Institute of Molecular Pathology and Immunology of the University of Porto, 4200-135 Porto, Portugal 6Department of Pathology, Faculty of Medicine, University of Porto, 4200-450 Porto, Portugal 7 Department of Biological Sciences, FFUP—Faculty of Pharmacy, University of Porto, 4050-313 Porto, Portugal 8Laboratory of Genetics and Instituto de Saúde Ambiental, Faculdade de Medicina, University of Lisbon, 1649-028 Lisbon, Portugal 9Department of Clinical Pathology, Centro Hospitalar e Universitário de Coimbra, 3004-561 Coimbra, Portugal *Correspondence: [email protected] (M.C.d.O.); ricardo.ribeir[email protected] (R.R.); Tel.: +351-222-077-502 (M.C.d.O.); +351-912-157-736 (R.R.) Received: 21 April 2020; Accepted: 28 May 2020; Published: 29 May 2020 Abstract: Extracellular vesicles (EVs) are small membrane vesicles released by all cells and involved in intercellular communication. Importantly, EVs cargo includes nucleic acids, lipids, and proteins constantly transferred between different cell types, contributing to autocrine and paracrine signaling. In recent years, they have been shown to play vital roles, not only in normal biological functions, but also in pathological conditions, such as cancer. In the multistep process of cancer progression, EVs act at different levels, from stimulation of neoplastic transformation, proliferation, promotion of angiogenesis, migration, invasion, and formation of metastatic niches in distant organs, to immune escape and therapy resistance. Moreover, as products of their parental cells, reflecting their genetic signatures and phenotypes, EVs hold great promise as diagnostic and prognostic biomarkers. Importantly, their potential to overcome the current limitations or the present diagnostic procedures has created interest in bladder cancer (BCa). Indeed, cystoscopy is an invasive and costly technique, whereas cytology has poor sensitivity for early staged and low-grade disease. Several urine-based biomarkers for BCa were found to overcome these limitations. Here, we review their potential advantages and downfalls. In addition, recent literature on the potential of EVs to improve BCa management was reviewed and discussed. Keywords: extracellular vesicles; microvesicles; bladder cancer; urothelial cancer; biomarkers; liquid biopsy 1. Introduction: Bladder Cancer and Disease Management Urological tumors represent approximately 25% of all human cancers [ 1 ]. Bladder cancer (BCa) is the 10th most common, and the 9th cause of death by malignancy worldwide [ 2 ]. Aging, ethnicity, Cancers 2020,12, 1400; doi:10.3390/cancers12061400 www.mdpi.com/journal/cancers
Cancers 2020,12, 1400 2 of 30 and male gender are considered non-modifiable risk factors [ 2 – 4 ], but most tumors are derived from acquired environmental exposure to carcinogenic substances. Cigarette smoking is considered the main risk factor [ 5 , 6 ], with an estimated causal association for half of BCa in both genders [ 7 – 9 ], whereas occupational exposure accounts for 10–20% of all cases [ 10 ]. The worldwide incidence of BCa seems to reflect areas with higher exposure to risk factors [ 10 ], which explains why developed countries have a larger number of diagnosed cases [ 2 , 10 ]. As an example, Schistosoma haematobium infection, another known risk factor, is more prevalent in northern and sub-Saharan African countries, where there is a relatively higher incidence of BCa [ 10 ]. In addition, differences in healthcare systems also account for disparity of incidence rates, being better resources associated to an easier and faster diagnosis. Urothelial cancer originates in the epithelial cells of the urothelium, extending from the renal pelvis to the urethra [ 11 – 13 ]. The majority of these tumors are located in the bladder, accounting for 90–95% of cases, while 5–10% are located in the upper urinary tract (UUT) [ 14 – 18 ]. Tumor extension is classified according to the TNM (Tumor-Node-Metastasis) staging system. At diagnosis, approximately 75–80% of bladder tumors are non-muscle invasive (NMIBC), which includes mucosa (for stages Ta and Cis) and lamina propria (T1 stage) confined disease, while 20–25% are muscle-invasive (MIBC), when invading the muscle layer and beyond (T2–T4 stages) [1,4,14]. Although clinical presentation may be suggestive, the gold standard diagnostic procedures are cystoscopy and urinary cytology [ 19 – 24 ]. Nevertheless, cystoscopy is an invasive, operator-dependent procedure, with low sensitivity for small papillary or Cis tumors, which, if underdiagnosed and untreated, progress to muscle-invasive disease in approximately half of the patients [ 19 – 24 ]. The sensitivity and specificity of white light cystoscopy is 71% (95% CI: 0.49–0.93%) and 72% (95% CI: 47–96%), respectively [ 24 ]. However, due to its invasiveness, it is frequently associated with side effects such as dysuria (50%), hematuria (19%), or urinary tract infection (3%) [25,26]. As for urinary cytology, it has high diagnostic accuracy for high grade lesions and Cis, with a sensitivity of 80–90% and specificity between 98% and 100% [ 27 ]. However, it exhibits low sensitivity for low grade lesions, between 4% and 31% [ 28 – 33 ], and high rate of false positives, due to benign or inflammatory conditions produced by chemo or radiation therapy [ 34 , 35 ]. To overcome these limitations, several urinary biomarkers were developed and are currently commercially available. Compared to cytology, they have higher sensitivity but lower specificity and are, unfortunately, less useful in low risk BCa [ 36 – 38 ]. Therefore, consensus among the different international societies on these biomarkers still do not recommend them as replacements of cytology in the current clinical practice [36–38]. The standard therapy for NMIBC is trans-urethral resection of the bladder (TURB), with both diagnostic and therapeutic purposes, complemented or not by intravesical adjuvant treatment [ 39 , 40 ]. However, even after complete endoscopic resection, there is a high recurrence rate, around 50–70%, and 10–30% will progress to MIBC [ 39 , 40 ]. This feature of BCa natural history elicits the need for a regular follow-up with cystoscopy and cytology at every 3 months interval, generally accompanied by repeated treatments due to recurrence, and which frequently result in high morbidity and economic burden [1,41,42]. Driven by the invasiveness and morbidity of cystoscopy, the lack of acceptable sensitivity of urinary cytology and of specificity of the commercially available urinary diagnostic biomarkers, urge the need for extensive research on the identification of novel and more effective biomarkers, to implement better tools for diagnosis, follow-up, and screening of at risk populations [1,29,34,42–44]. Extracellular vesicles (EVs) are small membrane vesicles which have emerged as a source of biomarkers in bladder cancer [ 45 ]. Their detection in liquid biopsies is feasible, due to their presence and stability in most human fluids, and may serve as biomarkers in bladder cancer early detection as they present similar cargo to their donor cancer cells [ 46 ]. Additionally, they have some advantages as a source of biomarkers since they are more abundant in liquid biopsies compared to circulating tumor cells (CTCs), protect their cargo against degradation and may carry molecular signatures associated with specific phenotypes [ 47 – 49 ]. The present review focus on the status of urinary biomarkers in
Cancers 2020,12, 1400 3 of 30 diagnosis and follow-up of bladder cancer, pinpointing the emerging potential role of urinary EVs on bladder cancer diagnosis and management. 2. Liquid Biopsy as a Source of Biomarkers for Bladder Cancer The ideal biomarker would be cost-effective, objective, fast to process, and easy to interpret, with high sensitivity and specificity [ 43 , 50 – 54 ]. For urothelial cancer biomarkers, four goals have been proposedtobeaccomplished: (i)reducetheneedforfrequentinvasiveprocedures; (ii)excluderecurrence; (iii) detect progression towards invasive disease; (iv) predict effective treatment response [ 43 , 44 ]. The close contact with urothelium makes urine an attractive approach to detect the presence of tumor cells, in a minimally invasive way. Importantly, this liquid biopsy approach would allow multiple longitudinal sampling of the tumor to identify presence of malignancy, grade, and genomic landscape for improved clinical follow-up. [53,54]. Following this line of thought, previous research for BCa biomarkers has been conducted using mostly proteins, nucleic acids, inflammatory and metabolite markers, within the concept of liquid biopsies [ 55 , 56 ]. Taking into consideration that such biopsies concern the detection of any kind of molecular or cellular biomarkers in patient bodily fluids (including urine, blood, saliva, pleural, peritoneal, or cerebrospinal fluids), a novel biomarkers array emerged. These include circulating tumor cells (CTCs), proteins, metabolites, circulating nucleic acids, namely cell-free tumor DNA (ctDNA), messenger RNA (mRNA), micro RNA (miRNA), or long non-coding RNA (lncRNA). Most of these biomarkers may be found free or within extracellular vesicles (EVs) shed by tumor cells or by other elements of the tumor microenvironment [ 56 , 57 ] (Figure 1). There is a growing interest on the liquid biopsy concept, since (i) the biomarkers found have extensive potential for diagnosis and monitoring of disease stage and recurrence; (ii) prediction of therapeutic response/resistance and disease prognosis, with minimally invasive procedures, and (iii) helping therapeutic clinical reasoning based on identified molecular changes [56–58]. 2.1. Commercially Available Urine Biomarkers in Bladder Cancer Several interesting and promising biomarkers have been under clinical scrutiny during the past years, although only those approved by in vitro diagnostics (IVD) regulatory entities (e.g., FDA) became commercially available biomarkers, to be used as adjuncts to cystoscopy in primary diagnosis and follow-up of BCa. Taking into consideration the various reports on the subject, novel urinary biomarkers contributed to higher sensitivity but lower specificity than cytology, leaving them out of international guidelines recommendations [ 1 , 36 , 53 , 54 , 59 – 62 ]. Table 1provides an overview of the biomarkers approved for clinical use and their reported diagnostic accuracy.
Cancers 2020,12, 1400 4 of 30 Cancers 2020, 12, x 4 of 30 Figure 1. Urine biomarkers for bladder cancer (BCa) diagnosis and follow up. Illustration of the distinct available approaches for the detection of urothelial cancer cells in patients’ urine. The close interaction between the bladder tumor and the urine makes this body fluid a reliable source of cancer biomarkers. A plethora of non-invasive assays exploring distinct analytes (exfoliated tumor cells; proteins; genes; metabolites and extracellular vesicles) in patients’ urine allows the longitudinal analysis of tumor progression. Some of the commercially-available tests includes FDA-approved (UroVysion™: aneuploidy of chromosomes 3; 7; 17 and the loss of 9p21 by FISH; ImmunoCyt™/uCyt+™ test: detection of carcinoembrionary antigen (CEA) and mucins by immunohistochemistry (IHC); bladder tumor antigen (BTA) TRAK/BTA Stat and NMP22 BC test kit); non-FDA approved (CxBladder™: IGFBP5, HOXA13, MDK, CDK1 and CXCR2 by RT-qPCR; Assure MDx™: FGFR3, TERT and HRAS (mutations), OTX1, ONECUT2 and TWIST1 (methylation); XPert Bladder Cancer Monitor™: UPK1B, IGF2, CRH, ANXA10 and ABL1 by RT-qPCR; and UBC™: cytokeratins 8 and 18 by ELISA) and the emerging extracellular vesicles (EV)-based biomarkers (not commercialized yet). 2.1. Commercially Available Urine Biomarkers in Bladder Cancer Several interesting and promising biomarkers have been under clinical scrutiny during the past years, although only those approved by in vitro diagnostics (IVD) regulatory entities (e.g., FDA) became Figure 1. Urine biomarkers for bladder cancer (BCa) diagnosis and follow up. Illustration of the distinct available approaches for the detection of urothelial cancer cells in patients’ urine. The close interaction between the bladder tumor and the urine makes this body fluid a reliable source of cancer biomarkers. A plethora of non-invasive assays exploring distinct analytes (exfoliated tumor cells; proteins; genes; metabolites and extracellular vesicles) in patients’ urine allows the longitudinal analysis of tumor progression. Some of the commercially-available tests includes FDA-approved (UroVysion ™ : aneuploidy of chromosomes 3; 7; 17 and the loss of 9p21 by FISH; ImmunoCyt ™ /uCyt+ ™ test: detection of carcinoembrionary antigen (CEA) and mucins by immunohistochemistry (IHC); bladder tumor antigen (BTA) TRAK/BTA Stat and NMP22 BC test kit); non-FDA approved (CxBladder ™ : IGFBP5, HOXA13, MDK, CDK1 and CXCR2 by RT-qPCR; Assure MDx ™ : FGFR3, TERT and HRAS (mutations), OTX1, ONECUT2 and TWIST1 (methylation); XPert Bladder Cancer Monitor ™ : UPK1B, IGF2, CRH, ANXA10 and ABL1 by RT-qPCR; and UBC ™ : cytokeratins 8 and 18 by ELISA) and the emerging extracellular vesicles (EV)-based biomarkers (not commercialized yet).
Cancers 2020,12, 1400 5 of 30 Table 1. Urine-based tests to aid bladder cancer clinical reasoning. Test Sample Biomarker Assay Purpose Sensitivity Specificity References BTA TRAK®Protein Complement factor H-related CIA Follow-Up 0.64 (0.58–0.69) 0.77 (0.73–0.81) [63–65] BTA Stat ®Protein Complement factor H-related SIA Follow-Up 0.65 (0.54–0.75) 0.74 (0.64–0.82) [64–66] NMP22 BC test®Protein NMP-22 SIA Follow-Up 0.69 (0.62–0.75) 0.77 (0.70–0.83) [67,68] NMP22 BladderChek test®Protein NMP-22 SIA Diagnosis 0.47 (0.33–0.61) 0.93 (0.81–0.97) [67–69] Follow-Up 0.70 (0.40–0.89) 0.83 (0.75–0.89) [67–69] ImmunoCyt/uCyt+™Sediment Tumor associated cellular antigens (M344; LDQ10; 19A11) IF cytology Diagnosis 0.85 (0.78–0.90) 0.83 (0.77–0.87) [64,65,70] Follow-Up 0.75 (0.64–0.83) 0.76 (0.70–0.81) [64,65,70] UroVysion™Sediment Aneuploidy for chromosomes 3; 7; 17; and loss of 9p21 locus FISH Diagnosis 0.73 (0.50–0.88) 0.95 (0.87–0.98) [71–73] Follow-Up 0.55 (0.36–0.72) 0.80 (0.66–0.89) [71–73] CxBladder Detect®mRNA IGFBP5; HOXA13; MDK; CDK1; CXCR2 RT-qPCR Diagnosis 0.74 (0.65–0.81) 0.82 (0.79–0.84) [74] CxBladder Monitor®mRNA IGFBP5; HOXA13; MDK; CDK1; CXCR2 RT-qPCR Follow-Up 0.91 (0.88–0.99) 0.96 (NPV) [75] AssureMDx™DNA FGFR3; TERT; HRAS; OTX1; ONECUT2; TWIST1 DNA methylat Diagnosis 0.93 0.86 [76] Xpert®Bladder Cancer mRNA UPK1B; IGF2; CRH; ANXA10; ABL1 RT-qPCR Follow-Up 0.84 (0.69–0.93) 0.91 (0.83–0.96) [77] UBC®Protein Cytokeratin 8 and 18 fragments SIA Diagnosis 0.61–0;65 0.77–0.82 [78] Abbreviations: BTA; bladder tumor antigen; CIA; colorimetric immunoassay; IF; immunofluorescence; NMP; nuclear matrix protein; UBC; urinary bladder cancer antigen; FISH; fluorescence in situ hybridization; RT-qPCR; reverse transcription-quantitative polymerase chain reaction; SIA; sandwich immunoassay.
Cancers 2020,12, 1400 6 of 30 2.1.1. FDA-Approved Urine Biomarkers The bladder tumor antigen (BTA) is a complement factor H related protein secreted by malignant cells, which confers them survival advantage, as it interferes in the complement cascade [ 79 ]. There are two approved versions of this test for BCa follow-up in concurrent use with cystoscopy, the BTA TRAK and the BTA Stat (Polymedco Inc., Cortlandt Manor, New York, USA) [ 63 ]. In different reviews and meta-analysis, the BTA Stat has a sensitivity and specificity of 64% and 77%, respectively, whereas the BTA Trak has 65% and 74%, respectively [ 64 – 66 ]. The sensitivity was higher in the diagnosis of symptomatic patients rather than in follow-up, but with similar specificity. Both tests demonstrated higher sensitivity than urinary cytology, despite the decreased specificity in conditions where the complement factor H related protein is present, such as in other genitourinary malignancies and benign conditions with hematuria, including lithiasis, inflammation, instrumentation, and intra-vesical therapies [31,64–66,80]. The nuclear matrix has an important role on DNA replication and RNA transcription and splicing [ 81 ], with nuclear matrix proteins (NMP) being essential components of mitosis, with a role in tumoral proliferation. Numerous NMPs have been described in solid tumors, although NMP22 was shown to be specific for BCa [ 81 , 82 ]. It is released from apoptotic cells towards urine, with significantly higher release rate in cancer than in normal cells [ 81 , 83 , 84 ]. The NMP22 BC test kit (Matritech Inc.; Newton, MA, USA) is a quantitative test used for patient follow-up, whereas the NMP22 BladderChek test ® (Matritech Inc.; Newton, MA, USA) is qualitative and used for both follow-up and initial diagnosis, in symptomatic patients [ 85 – 87 ]. Concerning sensitivity and specificity, the quantitative test has 69% and 77%, while the qualitative has 58% and 88%, respectively [ 64 , 67 – 69 , 88 , 89 ]. When compared to urinary cytology, the sensitivity of NMP22 was higher (70% versus 40%), albeit specificity was lower (81% versus 97%) [ 28 ]. Taken together, both NMP22 and cytology, resulted in sensitivity of 91% [ 28 , 89 ]. Notably, Grossman et al. studied approximately 2000 patients, to compare NMP22 Bladder Chek test ® with cystoscopy, and observed decreased NMP22 sensitivity (50–56%) in comparison to cystoscopy (89–91%), although diagnostic accuracy was 94–99% if both tests were considered together [ 90 ]. Although NMP22 has higher sensitivity than urinary cytology, specificity is too low to replace it. The fact that it is released from apoptotic cells, which might also be seen in benign conditions, is responsible for the relatively high false positive rate [ 91 ]. However, if combined with cistoscopy, this significantly increases its diagnostic value. The ImmunoCyt ™ /uCyt+ ™ test (Diagnocure Inc, Quebec, Canada) combines cytology with monoclonal antibody immunofluorescence labelling to detect three BCa antigens, M344, LDQ10, and 19A11, specifically found in malignant exfoliated urothelial cells [ 92 ]. To be positive, it requires many exfoliated cells (>500 per field). This test is expensive, with inter-observer variation and time-consuming analysis, but less prone to be influenced by benign inflammatory conditions, comparatively to other tests [ 93 , 94 ]. It is recommended in BCa patients only for follow-up as adjunct test to urinary cytology [ 95 ]. Sensitivity varies between 83% and 85% and specificity between 75% and 87%. These are higher in primary diagnosis than follow-up [ 28 , 64 , 65 , 70 ]. Mowatt et al. [ 28 ] compared uCyt+ ™ with urinary cytology and showed that this test presented higher sensitivity (82% versus 44%) and lower specificity (85% versus 94%), respectively. Interestingly, the simultaneous use of both tests improved sensitivity without impacting on specificity (87% and 68%, respectively). Sensitivity and specificity, in the study of Schmitz-Dräger et al. [ 96 ], was 85% and 88% for immunocytology and 84% and 98% for cystoscopy. When combined, sensitivity increased to 100%, whereas specificity decreased to 87%. Although less prone to interference, immunoCyt ™ has lower specificity than urinary cytology. Likewise, despite combination with cystoscopy increases sensitivity, the false positive rate remains elevated [ 96 ]. Pfister et al. [ 97 ] assert that due to its good sensitivity, the combined use of uCyt+ ™ with cytology might delay the time intervals between cystoscopies, particularly in lower risk patients. Currently, this test was approved only for patient follow-up [95]. UroVysion (Abbott Laboratories, Abbott Park, Illinois, USA) is a fluorescence in situ hybridization (FISH) probe set to detect bladder cancer cells [ 95 , 98 ]. It uses fluorescent labelled DNA probes to assess
Cancers 2020,12, 1400 7 of 30 genetic changes in exfoliated cells, namely chromosomal aberrations suggestive of BCa, aneuploidy of chromosomes 3, 7, and 17, and loss of the 9p21 locus. It has been approved for primary diagnosis and follow-up of BCa patients [ 95 , 98 ]. The reported sensitivity is 63–72% and specificity 85–87% [ 28 , 64 ]. Their diagnostic accuracy was superior in primary diagnosis than in follow-up, showing low sensitivity, similarly to urinary cytology, particularly for low grade tumors [ 71 , 72 ]. Compared to cytology, UroVysion had better sensitivity (72% vs. 42%) and lower specificity (83% vs. 96%) [ 71 ]. When used simultaneously, there was a significant improvement in sensitivity but still a low specificity of 50% [ 72 , 73 ]. UroVysion ™ is more expensive than cytology and requires specialized laboratory techniques. However, it could be useful in situations of atypical cytology and equivocal cystoscopy, identifying patients that may need further investigation [ 62 , 97 ]. Two prospective studies found that UroVysion had high positive predictive value, supporting that patients with a positive test and negative cystoscopy are more likely to have disease recurrence within one year [ 99 – 101 ]. Thus, a FISH test that is positive may be used to anticipate BCa recurrence during follow-up, especially in low risk patients [ 99 , 100 ], and reduce the number of unnecessary bladder biopsies [ 102 ]. Therefore, these studies suggest that chromosomic aberrations precede the detection of malignant lesions by cystoscopy and other standard techniques [101]. Analyses comparing the above-mentioned biomarkers have been reported. No differences were found in terms of sensitivity and specificity between the NMP22 test kit (cut-off > 10 U/mL) and the BTA Stat, in different stages and tumor grades [ 91 , 103 – 108 ]. The ImmunoCyt ™ has higher sensitivity for low stage (Ta, T1) and low-grade tumors, although lower specificity than the UroVysion ™ test [ 107 , 109 , 110 ]. However, although these tests were FDA approved for diagnosis and follow-up of BCa, together with standard techniques, most of these studies are case–control ones in populations with high prevalence of the disease, giving them an unrealistically high positive predictive value. On the other hand, the question remains how to interpret positive findings of these tests, when no significant findings are found on cystoscopy during follow-up. In fact, most positive results have not been submitted to confirmatory biopsy. Moreover, there are few external validation studies to support their use in daily practice. In summary, multicentric prospective studies are required to assess consequences from positive and negative tests in the long term, to increase the likelihood to be supported by international urology organizations. 2.1.2. Non-FDA Approved Urine Biomarkers To overcome the limitations of approved diagnostics biomarkers, extensive research is ongoing to find more effective biomarkers for BCa diagnosis and follow-up. There are several commercially available tests, despite not being approved by regulatory institutions. The CxBladder (Pacific Edge Diagnostics, Dunedin, New Zeland) is a RTqPCR test in voided urine, that quantifies different mRNAs expressed in BCa, as IGFBP5,HOXA13,MDK,CDK1, and CXCR2, associated with non-malignant conditions, to reduce the number of false-positives results due to inflammation [ 75 , 111 ]. The Triage ™ , Detect ™ , and Monitor ™ tests have specific population targets. The first was developed for screening of high-risk populations as a pre-test guiding the need for cystoscopy, the Cxbladder Detect ™ was intended for aiding in diagnosis of symptomatic patients and the Monitor ™ for BCa follow-up [ 75 ]. Studies using Cxbladder Detect ™ found higher sensitivity but lower specificity than cytology (73.6% sensitivity and 81.7% specificity) in one study [ 74 ], while another described 82% sensitivity and similar specificity [ 112 ]. There are reports for Cxbladder Monitor ™ stating a sensitivity of 93% that increases to 95% in high risk patients [ 75 ]. A large study comparing biomarkers performance for BCa detection in urine, found that the Cxbladder Monitor ™ sensitivity (91%) overcomed cytology by 22%, NMP22 BC test kit ® by 26% and NMP22 BladderChek ® by 11%, with an estimated reduction in the number of cystoscopies needed in follow-up by 81.7% [ 38 ]. Although prospective confirmatory trials are needed, some authors suggest its use as an auxiliary test to postpone the need of repeated cystoscopies in low risk patients [ 38 , 54 ]. The Assure MDx ™ (MDx Health, Irvine, CA, USA) is a test performed in urine to identify DNA mutations in three genes (FGFR3,TERT, and HRAS) and
Cancers 2020,12, 1400 8 of 30 methylations in another three genes (OTX1,ONECUT2, and TWIST1) [ 113 ]. A multicentric study demonstrated a sensitivity of 93% and specificity of 86% for BCa diagnosis [ 76 ]. It might be useful for screening low risk patients with symptomatic hematuria, reducing by an estimated 77% the number of unnecessary diagnostic cystoscopies. The XPert ® Bladder Cancer (BC) Monitor (Cepheid, Sunnyvale, CA, USA) is a RT-PCR test that measures the number of urinary transcripts in five genes, UPK1B, IGF2,CRH,ANXA10, and ABL1, and was designed for BCa patient follow-up [ 77 ]. This test was superior to cytology on NMIBC during follow-up, in terms of sensitivity (84% versus 33%), while presenting similar specificity (91% versus 94%) [ 77 ], despite controversial findings from another study, that indicated 46.7% sensitivity and 77% specificity [ 114 ]. The heterogeneity between studies and the lack of external validation makes its present use unreliable. The UBC ® (Urinary bladder cancer) is a test that detects the expression of cytokeratins 8 and 18 in urine, with presentation of quantitative, UBC ® -ELISA, and qualitative UBC ® -rapid procedures [ 78 ]. The reported sensitivity for UBC ® -rapid was 86.9% for detecting Cis, 30.4% for low grade NMIBC, 71.4% for high grade NMBC, and 60% for MIBC [ 78 ]. Other studies reported sensitivities between 30% and 87% for Cis and specificity of 63–91% [ 115 – 118 ]. The UBC ® -rapid is a test that provides results within 10 min, but in comparison with other tests has the lowest specificity [115]. 2.2. Emerging Urine Biomarkers Besides these commercially available diagnostic tools for BCa detection in the urine, extensive research is underway to find more effective biomarkers [ 60 , 86 , 119 ]. The insufficient number of patients in most studies, the lack of external validation in large scale prospective studies, and absence of comparative trials between biomarkers, foster the need for both methodological improvement of existing biomarkers and uncover novel robust biomarkers. Moreover, the existing biomarkers, in general, perform poorly in low risk BCa or have low specificity, and are more accurate in the initial diagnosis of BCa than in follow-up [ 66 ]. Taken together, these limitations preclude actual recommendations by most international clinical societies, and current literature suggests that single biomarkers are insufficient to overcome this problem. Therefore, the current trends of research are focusing on the combination of different biomarker signatures, to develop more accurate diagnostic and surveillance tools in BCa, as well as to predict its behavior in order to provide prognostic information [120]. 3. Extracellular Vesicles from Liquid Biopsies as a Source of Biomarkers Recently, tumor-derived extracellular vesicles (EVs) have received considerable interest by the biomarker research community for BCa diagnosis and follow-up. EVs are non-replicable small lipid bilayer membrane vesicles continuously released by all prokaryotic and eukaryotic cells to the extracellular surroundings. Importantly, this mechanism allows cells to exchange information (encoded in nucleic acids or proteins) between donor and target cells [121]. Depending on their biogenesis mechanism and secretion, EVs are broadly divided in exosomes, microvesicles, and apoptotic bodies (Figure 2). Exosomes are the generally smallest vesicles (30–150 nm) and originate by inward budding of intracellular endosomes, later converted into multivesicular bodies (MVBs) that fuse with the cellular membrane and release their cargo into the extracellular space. Instead, microvesicles are typically larger (100–1000 nm) and shed directly from the bleebing of the outward cellular membrane [ 46 , 121 – 123 ]. Apoptotic bodies (1000–5000 nm) are produced by cells undergoing programmed cell death. The processes of synthesis and release of EVs are regulated by endosomal sorting complexes required for transport (ESCRT), p53/TSAP6 pathway, syndecan-syntenin-ALIX, Rab proteins, phospholipase D, sphingomyelinase, and ceramide [ 124 ]. To date, it is not possible to experimentally support the attribution of certain activities or markers to specific EV subtypes, which prompted the International Society for Extracellular Vesicles (ISEV: www.isev.org/) to publish guidelines on EVs nomenclature and characterization. The current recommendation is to report all EV subtypes generically as “extracellular vesicles”, while describing in detail the mechanisms used
Cancers 2020,12, 1400 9 of 30 for their separation and characterization, their physical characteristics, biochemical composition, or descriptions of the cell of origin, unless their biogenesis pathway is confirmed [124–126]. Cancers 2020, 12, x 8 of 30 uncover novel robust biomarkers. Moreover, the existing biomarkers, in general, perform poorly in low risk BCa or have low specificity, and are more accurate in the initial diagnosis of BCa than in follow-up [66]. Taken together, these limitations preclude actual recommendations by most international clinical societies, and current literature suggests that single biomarkers are insufficient to overcome this problem. Therefore, the current trends of research are focusing on the combination of different biomarker signatures, to develop more accurate diagnostic and surveillance tools in BCa, as well as to predict its behavior in order to provide prognostic information [120]. 3. Extracellular Vesicles from Liquid Biopsies as a Source of Biomarkers Recently, tumor-derived extracellular vesicles (EVs) have received considerable interest by the biomarker research community for BCa diagnosis and follow-up. EVs are non-replicable small lipid bilayer membrane vesicles continuously released by all prokaryotic and eukaryotic cells to the extracellular surroundings. Importantly, this mechanism allows cells to exchange information (encoded in nucleic acids or proteins) between donor and target cells [121]. Depending on their biogenesis mechanism and secretion, EVs are broadly divided in exosomes, microvesicles, and apoptotic bodies (Figure 2). Exosomes are the generally smallest vesicles (30–150 nm) and originate by inward budding of intracellular endosomes, later converted into multivesicular bodies (MVBs) that fuse with the cellular membrane and release their cargo into the extracellular space. Instead, microvesicles are typically larger (100–1000 nm) and shed directly from the bleebing of the outward cellular membrane [46,121–123]. Apoptotic bodies (1000–5000 nm) are produced by cells undergoing programmed cell death. The processes of synthesis and release of EVs are regulated by endosomal sorting complexes required for transport (ESCRT), p53/TSAP6 pathway, syndecan-syntenin-ALIX, Rab proteins, phospholipase D, sphingomyelinase, and ceramide [124]. To date, it is not possible to experimentally support the attribution of certain activities or markers to specific EV subtypes, which prompted the International Society for Extracellular Vesicles (ISEV: www.isev.org/) to publish guidelines on EVs nomenclature and characterization. The current recommendation is to report all EV subtypes generically as “extracellular vesicles”, while describing in detail the mechanisms used for their separation and characterization, their physical characteristics, biochemical composition, or descriptions of the cell of origin, unless their biogenesis pathway is confirmed [124–126]. Figure 2. Schematic representation of extracellular vesicles biogenesis. Extracellular and plasma membrane molecules are engulfed by plasma membrane endocytosis, creating the early endosomes. These are converted into late endosomes called multivesicular bodies (MVB) containing intraluminal vesicles (ILV). The MVBs may either fuse with the plasma membrane and empty their ILVs by exocytosis, termed exosomes, or may Figure 2. Schematic representation of extracellular vesicles biogenesis. Extracellular and plasma membrane molecules are engulfed by plasma membrane endocytosis, creating the early endosomes. These are converted into late endosomes called multivesicular bodies (MVB) containing intraluminal vesicles (ILV). The MVBs may either fuse with the plasma membrane and empty their ILVs by exocytosis, termed exosomes, or may be converted into lysosomes and degrade their components. The process of microvesicle formation is calcium dependent and comes from direct shedding from outward cellular membrane budding; thereby carrying membrane markers of the parent cell. Apoptotic bodies are produced by secreting cells undergoing programmed cell death. Extracellular vesicle uptake by recipient cells may occur via fusion of the vesicle membrane with the cell membrane or by endocytosis. The vesicle may also transduce an intracellular signal by ligand binding to a receptor on the recipient cell. Abbreviations: MHC—major hystocompatibility complex; ER—endoplasmic reticulum; MVB—multivesicular bodies; ILV—intraluminal vesicles. 3.1. Physiological Functions of Extracellular Vesicles EVs behave ubiquitously, and have been identified in most body fluids, including blood, saliva, breast milk, urine, and amniotic fluid [ 125 – 132 ]. It is known that they carry a cargo from their donor cell, primarily composed of proteins, mRNAs, miRNAs, lncRNAs, small DNA fragments, and lipids. Indeed, it was postulated that EVs may reflect the biological functions of the originating cells [ 46 , 123 , 133 ], even though they were thought to be biologically insignificant or a simple vehicle for cellular waste disposal. In recent years, EVs were recognized as having physiological and pathological relevance [134]. Extracellular vesicles are key intervenients in several processes involved in cellular homeostasis [ 134 ]. Besides their physiological role on cell survival and anti-stress protection, they have a main function in intercellular communication, transporting key molecular messengers to recipient cells, thereby influencing the recipient cells function. Packaging this information into vesicles provides additional protection to the messengers (i.e., cargo) and allows simultaneous delivery to remote locations, which might be achieved through distinct mechanisms (Figure 3): (i) transfer of nucleic acids that induce phenotypic changes and affect multiple functions in recipient cells; (ii) transfer of lipids and proteins (such as cytokines, chemokines, and growth factors) to neighboring or distant cells, thus modulating the targeted recipient cells; (iii) trigger cell signaling pathways in recipient cells by exposure of ligands, proteins, and lipids, that bind to and stimulate matched receptors at the cell
Cancers 2020,12, 1400 16 of 30 Although most of the genomic research includes RNA, EVs may also be a source of tumor DNA. Lee et al. compared the genomic profiling of ctDNA and EVs DNA with tumor samples of nine patients submitted to radical cystectomy, and found the amplification of MDM2,ERBB2,CCND1, and CCNE1, and deletion of CDKN2A, PTEN, and RB1 genes, thus suggesting EVs DNA could also be another source for liquid biopsy [222]. Proteomic analysis of urinary EVs content has also started to contribute with the identification of proteins, regarding its diagnostic properties. One of the first studies documented the protein content of urinary EVs from healthy donors, using liquid chromatography-tandem mass spectrometry [ 131 ]. Chen et al. [ 223 ] analyzed the EV protein content in the urine of patients with BCa, compared with inguinal hernia patients used as controls. Liquid chromatography-tandem mass spectrometry identified 107 differently expressed proteins, including tumor associated calcium-signal transducer 2 (TACSTD2), a cell-surface protein absent in blood and with minimal expression in normal cells. Another study analyzed proteomic data from 129 BCa patients and 62 healthy controls and revealed urinary BCa biomarkers for diagnosis (alpha-1 antitrypsin, SERPINA1) and prognosis (Histone H2B type 1-K, H2B1K) [ 224 ]. Smalley et al. [ 225 ] using mass spectrometry found higher urinary levels for eight proteins in EVs from BCa patients. Besides the alpha subunit of GsGTP binding protein, resistin, and retinoic acid-induced protein 3, these authors identified five proteins associated with the epidermal growth factor receptor (EGFR) pathway, namely mucin 4, the epidermal growth factor receptor kinase substrate 8-like protein 1 (EPS8L1), the Eps15 Homology (EH)-domain-containing protein 4, the epidermal growth factor receptor kinase substrate 8-like protein 2 (EPS8L2) and the Guanosine-50-triphosphate hydrolyzing enzyme NRas (GTPase NRas). Another study, by Welton et al. [ 196 ] analyzed the urinary protein content on EVs of HT1376 bladder cancer cells, as well as in patients diagnosed with bladder cancer and healthy controls, and found several proteins elevated in BCa patients, namely basigin, integrin β 1, integrin α 6, MUC1, CD10, CD36, CD44, CD73, and 5T4. As mentioned before, Beckam et al. [ 141 ] found BCa derived EVs had higher levels of EDIL-3, which besides promoting angiogenesis and migration in a neoplastic environment, could also serve as a prognostic biomarker. The same principle could apply to periostin, which promotes tumor aggressiveness and progression, and is also present in higher levels in urothelial cancer patients. Its presence in cancer patients was associated with a poorer clinical outcome [142]. Further research on EVs is warranted, while creating the bases for accumulating evidence from past and present studies. Results should be consistently deposited in public databases, to facilitate the progress of research in this area. There are different compendiums available, namely webdomains such as the ExoCarta (http://www.exocarta.org), EVpedia (http://evpedia.info), and Vesiclepedia (http://www.microvesicles.org) which are updated databases on EVs characterization, content of proteins, mRNA, and lipids [226,227]. 4. Discussion and Future Perspectives Diagnosis and follow-up of bladder cancer currently relies on cystoscopy and cytology, despite known limitations. Cystoscopy is costly, invasive, and has reduced sensitivity for Cis or non-papillary lesions, whereas cytology lacks sensitivity for low grade tumors. Many urine-based tests have been developed to improve efficacy beyond current diagnostic tests. FDA-approved systems for diagnosis and monitoring of BCa have demonstrated higher sensitivity but lower specificity than cytology, particularly in cases of low grade and early stage or recurrent BCa; other tests are costly, limiting their use in the daily health practice (e.g., UroVysion test). Besides FDA-approved tests, the other commercially available tests remain mostly at the research level. Most tests have been assessed in inadequate conventional case-control studies, emphasizing the need for prospective cohort studies, with serial samples at different time points from a person at-risk, as well as large randomized trials, validating the biomarker clinical benefit compared to actual gold standard methods. This is the reason why their use as adjunct or surrogate to conventional cystoscopy and cytology is still not recommended by international societies’ guidelines. Moreover, positivity or equivocal results in these tests, when
Cancers 2020,12, 1400 17 of 30 associated with negative cystoscopic findings, may increase patient’s anxiety and trigger further invasive medical examinations, namely biopsies or ureteroscopic procedures. Consequently, besides the need of adequate studies to validate biomarkers for early detection, the current trends of research should focus on the combination of biomarkers into signatures. Extracellular vesicles released by cancer cells carry potential cancer specific biomarkers, as they shed directly from tumor cells and contain protein and nucleic acid material that reflect their cells of origin. EVs play indeed a fundamental role in intercellular communication, being key effectors in normal and pathophysiological cancer progression. Notably, unlike biopsies of solid tumors that provide a small picture of tumor heterogeneity, EVs might provide a wider perspective of tumor heterogeneity, since they are shed by tumor cells and from the cells of the tumor microenvironment. Moreover, their stability within the biological milieu, seemingly increased concentration in some tumors, and unique molecular signatures in oncological patients, makes EVs attractive biomarkers for cancer diagnosis and follow-up. Although out of the scope of this review, EVs can also be explored as therapeutic adjuvants, as a conveyance means for drug delivery and chemosensitization in BCa. Here, we sought to describe research that has been done using EVs as biomarkers in BCa. Indeed, EVs hold promise as biomarkers, not only in BCa, but overall, in oncology. Nevertheless, further research from bench-to-bedside is still needed, as discussed next, particularly in demonstrating its clinical effectiveness. The first limitations to overcome are technical problems related to EVs separation and characterization. There is a need for consensus in EVs nomenclature, to eventually stratify exosomes, microvesicles, and apoptotic bodies [ 228 ], and the need for fast, reproducible, and effective separation methods, improving standardization and comparison between studies. Currently, the most frequently used methods for separation of EVs rely on ultracentrifugation procedures that separate them based on size and density [ 150 ]. However, this is a time-consuming, laborious, and expensive method, that needs large amounts of sample material and requires expensive equipment, halting its applicability in the clinical laboratory. Other procedures, including double-filtration microfluidic chip-based devices to separate EVs concentration at the point-of-care [ 174 , 229 ] have been proposed, which combine immuno-affinity, sieving, and trapping to concentrate EVs. Indeed, this approach has the advantage of needing lower sample volumes but the disadvantages of EVs structural damage and lower recovery rates, thereby hampering its clinical applicability. Further separation techniques include immune-affinity capture, using antibodies directed against EVs surface markers and bypassing ultracentrifugation [230]. Another overlooked technical issue regards the specificity of these different EVs separation methods. Some of the isolated material identified as of EVs origin by these methods may not in fact be EVs related but derived from other soluble urinary components. On the other hand, urine is enriched in contaminants, such as albumin, Tamm–Horsfall protein and different lipoproteins, and other substances that need to be fully identified and isolated [ 160 ]. Therefore, there is the need of a specific, reliable, standardized, and reproducible method, to reduce the confounding effect these contaminants on the EV separation process. A recent research identified a list of 684 of these potential contaminants and developed a bottom-up density gradient centrifugation method to separate EVs from different kinds of protein material in urine, with high specificity and methodological repeatability [ 160 ]. Before clinical application, standardization of pre-analytical conditions for handling urine specimens is also required. Variables such as urine collection, use of protease inhibitors, storage, and shipping conditions should be accounted for, albeit often disregarded [ 155 ]. Bridging clinical usefulness with EVs research requires reporting guidelines to support readability, interpretation, and replication of experiments. We strongly encourage researchers to follow the International Society for Extracellular Vesicles (ISEV) guidelines [ 124 ] and the recently created EV-TRACK database (http://evtrack.org) stimulates researchers to report their methodologies for developing standardized protocols, place experimental guidelines into practice and increase research reproducibility [157,231].
Cancers 2020,12, 1400 18 of 30 From a clinical analytical perspective, the use of EVs as a source of biomarkers needs to be properly validated in negative controls, since urinary EVs are produced by cells from all urinary tract. Indeed, one of the main impairments of available urinary biomarkers is the low specificity. Positive results with these tests might also occur in benign conditions such as benign prostatic hyperplasia, urinary lithiasis, endourologic stents, or urinary tract infections. Therefore, to overcome these limitations it is necessary to distinguish EVs derived from BCa cells, from other sources of EVs such as the kidney or prostate, imposing the need for including in clinical studies negative controls, such as EVS from patients with prostate and kidney cancer and hematuria, in order to fully determine the specificity for BCa. Another source of criticism that hampers EVs application as a source of biomarkers in BCa relies on the fact that most studies typically have a small and often heterogeneous cohort of BCa patients, limiting validity and comparisons. However, this is also one of the main limitations of other commercially available urine tests, that preclude their recommendation by most international scientific and clinical organizations. After the identification of robust candidate biomarkers in EVs, additional external validation in large independent multi-institutional studies are required to establish their value as useful biomarkers in bladder cancer. 5. Conclusions Cystoscopy and cytology remain the clinically approved diagnostic and follow-up procedures for bladder cancer management. This review provides a critical insight into the available urine-based biomarkers, revealing their low improvement on the precision of diagnosis due to low specificity and limiting clinical utility, and fostering the need for more reliable, sensible, and specific urinary biomarkers for BCa. Extracellular vesicles secreted from their cells of origin are vital players in the physiological and pathological intercellular communication processes and are known to promote cancer progression. In recent years, there has been growing interest in EVs as a source of biomarkers in liquid biopsies for cancer diagnosis, management, prognosis, and even as vehicles for cancer treatment. Published reports yielded encouraging findings, even though the path from bench-to-bedside still needs to be optimized, namely regarding standardizing separation protocols and including powered studies with external validation. These crucial steps are fundamental for clinical implementation of EVs as a source of diagnostic and predictive biomarkers in liquid biopsies from BCa patients. Author Contributions: Conceptualization, R.R.; Writing—Original Draft Preparation, M.C.d.O.; Writing—Review and Editing, M.C.d.O., H.R.C., M.J.O., A.F., M.H.V., R.R.; Supervision, A.F., M.H.V. and R.R.; All authors have read and agree to the published version of the manuscript. Funding: This research received no external funding. Acknowledgments: The work of our laboratory is funded by FEDER - Fundo Europeu de Desenvolvimento Regional funds through the COMPETE 2020—Operational Programme for Competitiveness and Internationalization (POCI), Portugal 2020, and by Portuguese funds through FCT—Fundaç ã o para a Ci ê ncia e a Tecnologia/Minist é rio da Ci ê ncia, Tecnologia e Ensino Superior in the framework of the project "Institute for Research and Innovation in Health Sciences" (POCI-01-0145-FEDER-007274). The authors acknowledge Christophe de Sousa for figure sketching. Conflicts of Interest: MHV and HRC are members of the research team of a project financed by Celgene. MHV is member of the team of a grant co-financed by AMGEN. These companies had no role in the decision to publish nor were they involved in the writing of this manuscript. References 1. Babjuk, M.; Böhle, A.; Burger, M.; Capoun, O.; Cohen, D.; Comp é rat, E.M.; Hern á ndez, V.; Kaasinen, E.; Palou, J.; Roupr ê t, M.; et al. EAU Guidelines on Non-Muscle-Invasive Urothelial Carcinoma of the Bladder. Uptdate 2016. Eur. Urol. 2017,71, 447–461. [CrossRef] [PubMed] 2. Bray, F.; Ferlay, J.; Soerjomataram, I.; Siegelm, R.L.; Torre, L.A.; Jemal, A. Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J. Clin. 2018,68, 394–424. [CrossRef] [PubMed]
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