Outbreak of Xylella fastidiosa subsp. pauca ST53 affecting wild and cultivated olive trees on the island of Mallorca, Spain
Abstract
This research was funded by Projects E-RTA2017-00004-C06-02 from AEI-INIA Spain, and BeXyl (Beyond Xylell a, Integrated Management Strategies for Mitigating Xylell afastidiosa impact in Europe; Grant ID No. 101060593), from the European Union Horizon Action Programme ‘Food, Bioeconomy Natural Resourc-es, Agriculture and Environment’.
Full text
Phy opa hologia Medi e anea 63(3): 475-480, 2024
Fi enze Uni e si y P ess
www. up ess.com/pm
Phy opa hologia Medi e anea
The in e na ional jou nal o he
Medi e anean Phy opa hological Union
ISSN 0031-9465 (p in ) | ISSN 1593-2095 (online) | DOI: 10.36253/phy o-15891
Sho No es
Ci a ion: Mo alejo, E., Que glas, B.,
Mon esinos, M., Ad o e , F., Olmo,
D., Nie o, A., Ped osa, A., López, M.,
Juan, A., Ma co-Noales, E., Na a o-
He e o, I., Ba bé, S., Velasco-Amo,
M.P., Oli a es-Ga cía, C., & Landa,
B.B. (2024). Ou b eak o Xylella as idiosa
subsp. pauca ST53 a ec ing wild and
cul i a ed oli e ees on he island o
Mallo ca, Spain. Phy opa hologia Med-
i e anea 63(3): 475-480. doi: 10.36253/
phy o-15891
Accep ed: Decembe 27, 2024
Published: Decembe 30, 2024
© 2024 Au ho (s). This is an open access,
pee - e iewed a icle published by
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whe e o he wise no ed, unde he
e ms o he CC BY 4.0 License o
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me ada a.
Da a A ailabili y S a emen : All el-
e an da a a e wi hin he pape and i s
Suppo ing In o ma ion iles.
Compe ing In e es s: The Au ho (s)
decla e(s) no con lic o in e es .
Edi o : Anna Ma ia D’Onghia,
CIHEAM/Medi e anean Ag onomic
Ins i u e o Ba i, I aly.
ORCID:
EM: 0000-0003-4927-9367
DO: 0000-0002-8542-9089
AN: 0000-0001-5484-7088
EM-N: 0000-0001-7973-0345
SB: 0000-0002-2929-6410
MPV-A: 0000-0001-7176-0435
CO-G: 0009-0004-6511-2633
BBL: 0000-0002-9511-3731
Ou b eak o Xylella as idiosa subsp. pauca ST53
a ec ing wild and cul i a ed oli e ees on he
island o Mallo ca, Spain
Edua do MORALEJO1,*, Bà ba a QUETGLAS1, Ma ina MONTESINOS1,
F ancisco ADROVER2, Diego OLMO2, Alicia NIETO2, Ana PEDROSA2,
Ma a LÓPEZ3, And eu JUAN3, Es e MARCO-NOALES4, Inmaculada
NAVARRO-HERRERO4, Sil ia BARBÉ4, Ma ía Pila VELASCO-AMO5,
Concepción OLIVARES-GARCÍA5, Blanca B. LANDA5
1 T agsa, Emp esa de T ans o mación Ag a ia, Delegación de Balea es, 07005 Palma de
Mallo ca, Spain
2 Ins i u de Rece ca i Fo mació Ag oalimen à ia i Pesque a de les Illes Balea s, 07009
Palma de Mallo ca, Spain
3 Se icio de Ag icul u a, Conselle ia de Medi Ambien , Ag icul u a i Pesca, 07006 Palma
de Mallo ca, Spain
4 Cen o de P o ección Vege al y Bio ecnología, Ins i u o Valenciano de In es igaciones
Ag a ias (IVIA), CV-315 km 10.7, 46113 Moncada, Spain
5 Ins i u e o Sus ainable Ag icul u e, Consejo Supe io de In es igaciones Cien í icas
(IAS-CSIC), 14004 Có doba, Spain
*Co esponding au ho : E-mail: emo alejo @gmail.com
Summa y. The Balea ic Islands ha e eme ged as a ho spo o he in asi e plan pa h-
ogen Xylella as idiosa (X ). Since 2016, he X subsp. as idiosa and mul iplex ha e
been de ec ed causing almond lea sco ch and Pie ce’s disease on he island o Mal-
lo ca, Spain, and a new sequence ype (ST), ST80, o subsp. pauca is in ec ing wild and
cul i a ed oli e ees on he island o Ibiza. In addi ion, X subsp. mul iplex ST81 is
widesp ead in sc ublands, and causes mild, sub-le hal dieback o wild oli e ees in
Meno ca and Mallo ca. A new ou b eak is he e epo ed o he X subsp. pauca in he
municipali y o Sencelles in he cen e o Mallo ca island. In ea ly 2024, dying pa ches
we e obse ed in wild oli e ees (Olea eu opaea a . eu opaea subsp. syl es is). Sam-
ples om hese ees we e X -posi i e in di e en qPCR es s, and he pa hogen was
subsequen ly iden i ied as belonging o ST53 o subsp. pauca, he same gene ic a ian
esponsible o oli e quick decline synd ome in Apulia, I aly. Mo e han 184 plan s o
eigh hos s ha e es ed posi i e o subsp. pauca wi hin a dema ca ion zone o app ox.
1 km adius. The iden i ied hos species include 124 wild oli e ees, 40 cul i a ed oli e
ees, nine Rhamnus ala e nus, six Ne ium oleande , wo La andula angus i olia, one
Lau us nobilis, one La andula den a a and one Polygala my i olia. O pa icula con-
ce n is de ec ion o co-in ec ions by X subsp. subsp. pauca and mul iplex on plan s
om na u al se ings (wild oli es, L. den a a and R. ala e nus), posing po en ial isk o
gene ic ecombina ions. In ensi e su eys a e being ca ied ou o con ain he sp ead
o ST53, and in ec ed plan s ha e been des oyed in he dema ca ed zone.
Keywo ds. Gene ic di e si y, oli e quick decline synd ome, in asi e pa hogens, Mul i-
Locus Sequence Typing (MLST), disease ou b eak.
476 Edua do Mo alejo e alii
INTRODUCTION
The ec o -bo ne plan pa hogenic bac e ium Xylella
as idiosa (X ) has ecen ly eme ged as a h ea o ag i-
cul u e in sou he n Eu ope. Following i s i s de ec-
ion in Apulia (I aly) in 2013, associa ed wi h he apid
decline synd ome o oli e ees (Sapona i e al., 2013),
he Eu opean Union (EU) ook decisi e ac ion wi h
manda o y su eys o con ain possible sp ead o he
pa hogen wi hin he EU (Reg. EU 2016/2031). The h ee
main subspecies o X ha e since hen been de ec ed, and
hei es ablishmen con i med, in se e al sou he n Eu o-
pean coun ies, including he island o Co sica and he
Balea ic Islands (Sapona i e al., 2013; Denance e al.,
2017; Landa e al., 2020; Olmo e al., 2017; Ca alho-Luis
e al., 2022).
The Balea ic Islands ha e become a ho spo o
es ablishmen o gene ic di e si y o his pa hogen,
which o igina ed om No h, Cen al and Sou h Ame -
ica. Since 2016, he h ee main subspecies o X , as idi-
osa, mul iplex, and pauca, ha e been de ec ed, along
wi h unique geno ypes such as he sequence ype (ST)
81 ( om subsp. mul iplex) on he islands o Mallo ca
and Meno ca, and he ST80 ( om subsp. pauca) on he
island o Ibiza (Olmo e al., 2021). Subspecies as idiosa,
and in pa icula ST1, is only known on Mallo ca island,
whe e i caused se e e ou b eaks o Pie ce’s disease o
g ape ines and lea sco ch o almond (Mo alejo e al.,
2019; Mo alejo e al., 2020). Some e idences sugges ha
he geno ypes esponsible o Pie ce’s disease (ST1) and
almond lea sco ch (ST1 and ST81) in Mallo ca we e
likely a single in oduc ion ia in ec ed plan ma e ial
om Cali o nia, in app ox. 1993 (Mo alejo e al., 2020;
Velasco-Amo e al., 2022).
METHODS
Ea ly in 2024, plan heal h inspec o s in he Balea ic
Islands no iced an unusually se e e decline in a s and o
wild oli e ees (Olea eu opaea subsp. eu opaea a . syl-
es is) (Figu e 1). Samples om di e en ee b anches
we e collec ed, we e pooled, and hen sen o he Balea -
ic Islands O icial Plan Heal h Labo a o y (LOSVIB) o
analyses. Sample ex ac s we e p epa ed by homogeniz-
ing 0.5 g o lea pe ioles in an ex ac ion bag (BIORE-
BA®) and g inding hem in 5 mL (1:10 weigh : olume) o
phosha e bu e ed saline (PBS) using a semi-au oma ed
homogenize (Homex 7; BIOREBA®).
To al DNA ex ac ion was ca ied ou using 200 µL
o each sample ex ac , and he EZNA HP Plan Mini ki
(Omega-Bio ek), which employs a CTAB-based me hod,
as desc ibed in he EPPO p o ocol (EPPO, 2023). The
DNA ex ac s we e subsequen ly es ed o he p esence
o X by quan i a i e eal- ime PCR (qPCR), acco ding
o Ha pe e al. (2010). Aliquo s o DNA om he X
posi i e samples om he wild oli e ee we e sen o he
Ins i u e o Sus ainable Ag icul u e (IAS-CSIC), Có do-
ba, Spain, o ST de e mina ion, which was ca ied ou
by con en ional Mul iLocus Sequence Typing (MLST)
analysis (Yuan e al., 2010). A nes ed-MLST (Cesb on e
al., 2020) analysis was used when no enough ampli ica-
ion p oduc o di ec sequencing was ob ained when
using he con en ional MLST app oach.
RESULTS AND DISCUSSION
MLST analyses iden i ied he p esence o alleles
leuA-7, pe C-6, malF-16, cysG-24, holC-10, nuoL-16 and
gl T-14 associa ed wi h X subsp. pauca ST53 in he
a ec ed wild oli e ee. Addi ionally, he qPCR p o o-
col o Dupas e al. (2019) alida ed he diagnosis as X
subsp. pauca.
A e con i ming he diagnosis and ecognizing he
po en ial de as a ing impac i his subspecies we e o
sp ead, he phy osani a y au ho i y o he Balea ic Go -
e nmen implemen ed a a ge ed ac ion plan. This includ-
ed inc easing su eys and in ensi e sampling in he a ea
o he new ou b eak. Addi ional measu es we e also es ab-
lished o hose al eady in place om he cu en Regula-
ion (EU) 2016/2031. These included analyses o de e -
mine he subspecies p esen in all he X -posi i e samples,
in collabo a ion wi h he Valencian Ins i u e o Ag icul-
u al Resea ch (IVIA), using he qPCR p o ocols de el-
oped by Dupas e al. (2019) and Hodge s e al. (2021).
Since he i s de ec ion in Janua y 2024 and up o
Decembe 2024, a o al o 1,328 samples om wi hin
he disease ou b eak a ea ha e been analyzed. This has
shown ha 184 plan s we e in ec ed by X subsp. pauca,
Figu e 1. A g oup o wild oli e ees wi h se e e symp oms o quick
decline synd ome. This pho og aph was aken a ocus 0 nea he
municipali y o Sencelles, Mallo ca Island, Spain, whe e Xylella as id-
iosa subsp. pauca ST53 was ound o he i s ime in Janua y 2024.
477
Xylella as idiosa subsp. pauca ST53 on oli e ees on he island o Mallo ca, Spain
and eigh di e en hos s es ed posi i e o X subsp.
pauca, om wi hin a dema ca ed zone (app ox. 1 km
adius) a ound he i s disease de ec ion. The in ec ed
hos species include 124 wild oli e ees, 40 cul i a ed
oli e ees, nine Rhamnus ala e nus plan s, six o Ne i-
um oleande , wo o La andula angus i olia, and one
each o Lau us nobilis, La andula den a a and Polygala
my i olia (Table 1).
Despi e he nume ous cases o X subsp. pauca
in ec ions de ec ed (Table 1), all cases analyzed by
MLST, up o p esen , and wi hin he ini ial ocus o he
ou b eak belong o he ST53 (Figu e 2). Howe e , gi en
ha X subsp. as idiosa and X subsp. mul iplex we e
al eady es ablished in he a ea, i was no su p ising o
ind some mixed in ec ions by hese wo subspecies in
some indi idual plan s. Ele en pe cen o X -posi i e
samples we e o mixed in ec ions, wi h 26 cases o sub-
spp. pauca/mul iplex, one o subspp. pauca/ as idiosa
and wo o subspp. mul iplex/ as idiosa (Table 1). The
mul iple in ec ions p obably may inc ease isk o gene ic
ecombina ions in he pa hogen and he o ma ion o
new sequence ypes wi h di e en i ulence and/o hos
anges (Po nis e al., 2019).
Al hough i is p ema u e o d aw de ini i e conclu-
sions, he ST53 s ain iden i ied in Mallo ca exhibi ed
a le el o i ulence compa able o ha associa ed wi h
he oli e quick decline synd ome obse ed in Apulia,
based on he obse ed highe se e i y o symp oms in
bo h wild and cul i a ed oli e ees, compa ed o hose
induced by X subsp. mul iplex ST81. E o s a e cu en -
ly unde way (Decembe 2024) o isola e he bac e ium,
o enable comple e genome sequencing and ca y ou
compa a i e analysis o he pa hogen’s compe e genome
wi h hose o ST53 s ains om Apulia.
A new p ocedu e has been es ablished based on a -
ge ed sequence cap u e en ichmen o X in combina ion
wi h high- h oughpu sequencing using he Illumina
pla o m. This is being implemen ed o p o ide addi ion-
al genomic in o ma ion (Velasco-Amo e al., 2021). Ini-
ial esul s based on app ox. 126 genes ha e shown close
gene ic ela edness o he ST53 s ain in ec ing he wild
oli e in Mallo ca wi h all o he ST53 s ains isola ed
om Cos a Rica and I aly (M.P. Velasco-Amo and B.B.
Landa; unpublished esul s).
A complica ing ac o in con ainmen o ST53
s ains is he la ge popula ion o wild oli e ees
h oughou Mallo ca, which may acili a e ansmission
o he pa hogen o cul i a ed oli e ees. Tigh wild oli e
ee popula ion ne wo ks can be dense ese oi s o X ,
and p o ide e ec i e dispe sal pa hways o comme cial
oli e plan a ions. I is also unclea whe he p e ious
in ec ions o wild oli e ees by ST81 o X . subsp. mul-
iplex will ha e in luence subsequen in ec ions by ST53.
I is es ima ed ha mo e han 50% o wild oli e ees a e
in ec ed wi h ST81 (Olmo e al., 2021), so any in e ac ion
be ween ST53 and ST81 in co-in ec ions, ega dless o i s
in ensi y, could ha e impo an epidemiological implica-
ions (Jege and B aga d, 2019).
Epidemiological models ha e shown ha he mos
e ec i e s a egy o p e en ing sp ead o X is o decel-
Table 1. Hos plan species, numbe s o plan s analysed, and numbe s in ec ed by di e en subspecies Xylella as idiosa (X ), in single o in
mixed in ec ions, in he ou b eak o subspecies pauca a ound he locali y o Sencelles (Mallo ca island, Spain)
Hos s To al
analyzed
X
posi i ea%
Xylella as idiosa subspeciesb
pauca mu liplex as idiosa pauca/
mul iplex
pauca/
as idiosa
mul iplex/
as idiosa
Lau us nobilis 6 2 33 1 1
La andula angus i olia 8 8 100 2 6
La andula den a a 6 5 83 4 1
Ne ium oleande 22 6 27 6
Olea eu opaea a . eu opaea subsp. eu opaea 57 41 72 37 1 3
Olea eu opaea a . eu opaea subsp. syl es is 929 155 17 106 29 2 18
Polygala my i olia 1 1 100 1
P unus dulcis 8 1 13 1
Rhamnus ala e nus 190 26 14 5 8 6 3 1 2
Sal ia osma inus 23 19 83 19
Thi een o he plan species 78 -
To als 1328 264 19.88 157 69 8 26 1 2
a Diagnoses pe o med using he qPCR es o Ha pe e al. (2010).
b Subspecies assigna ion based on he qPCR es s as desc ibed by Dupas e al. (2019) and Hodge s e al. (2021).
478 Edua do Mo alejo e alii
e a e ansmission chains (Whi e e al., 2020; Giménez-
Rome o e al., 2023). Acco dingly, in Mallo ca, he deci-
sion has been aken o e adica e in ec ed plan s whe e e
easible. Al hough his is a di icul and a guably una -
ainable objec i e, he a emp can ha e signi ican long-
e m impac s. I is an icipa ed ha popula ions o he
p incipal insec ec o o X , Philaenus spuma ius, will
p og essi ely decline in Mallo ca in esponse o ising
empe a u es associa ed wi h clima e change (Giménez-
Rome o e al., 2024). Unsui able condi ions o he ec-
o may become signi ican in a pe iod o app ox. 15 o
20 yea s. Clima e change could be bene icial o con ain-
ing he ou b eak, p o ided ha exponen ial in ec ion
a es can be educed. App op ia e implemen a ion o
hese ac ions will alle ia e he economic consequences
o X o he Mallo can oli e p oduc ion sec o in he
medium e m.
FUNDING
This esea ch was unded by P ojec s E-RTA2017-
00004-C06-02 om AEI-INIA Spain, and BeXyl
(Beyond Xylella, In eg a ed Managemen S a egies o
Mi iga ing Xylella as idiosa impac in Eu ope; G an
ID No. 101060593), om he Eu opean Union Ho izon
Ac ion P og amme ‘Food, Bioeconomy Na u al Resou c-
es, Ag icul u e and En i onmen ’.
ACKNOWLEDGEMENTS
The au ho s o his pape hank he owne s o he s ud-
ied o cha ds, and especially Ani a an de We , who has
always been kind and willing o collabo a e wi h he inspec-
o s and echnicians o he Mallo can plan heal h se ices.
Figu e 2. Map o he ou b eak ocus o Xylella as idiosa subsp.paucaST53 in he municipali y o Sencelles, nea he cen e o Mallo ca Island,
Spain. The X pauca-posi i e plan s we e ound wi hin a adius o < 1 km. Bo h squa es wi h ampli ied iews show X -posi i e plan s wi hin
he na u al ege a ion, o med mainly by wild oli e ees nea a ms whe e o he X subsp. pauca ST53 posi i e plan s we e ound wi hin oli e
o cha ds. The posi i e samples o X subsp. pauca ST53 plan s we e mixed wi h o he in ec ed wi h subsp. mul iplex, and o a lesse ex en wi h
subsp. as idiosa. In a ew cases, co-in ec ions by X subsp. pauca ST53 and subsp. mul iplex we e ound in he same plan (Table 1).
479
Xylella as idiosa subsp. pauca ST53 on oli e ees on he island o Mallo ca, Spain
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