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Study of the PTGS suppressor activity of V2 protein from geminivirus Beet curly top virus

Pérez-Luna, Ana Isabel,Rodríguez-Negrete, Edgar,Castillo, D.,Morilla, Gabriel,Wang, Liping,Lozano-Durán, Rosa,Rodríguez-Bejarano, Eduardo

Abstract

Suppression of gene silencing is a key mechanism for the success of viral infection in plants. DNA viruses from the Geminiviridae family encode several proteins that suppress post- and transcriptional gene silencing (PTGS/TGS). In Begomovirus V2 has been shown to be the strongest PTGS suppressor in transient assays. Beet curly top virus (BCTV), the model species for the Curtovirus genus, is able to infect the widest range of plants among geminiviruses. In this genus, only C2 protein has been described to inhibit PTGS and TGS. Objective: Our main goal is to test the PTGS suppressor activity of BCTV V2 and to study further its gene-silencing suppression mechanism. Material and methods: To determine whether BCTV V2 is also a gene silencing suppressor we carried out transient expression assays in Nicotiana benthamiana wild-type or the 16c GFP-expressing line: plant leaves were agroinfiltrated with binary constructs to express GFP (35S:GFP) and V2. Visual detection of GFP fluorescence was confirmed by western blot. Relative levels of the GFP-specific siRNAs were determined by northern blot. We also expressed the V2 ORF from a Potato virus X-derived vector in N. benthamiana plants. As an approach to identify a genetic target of V2 in the antiviral silencing pathway, we carried out a complementation analysis of BCTV-∆V2 in a series of Arabidopsis thaliana mutants deficient in specific components of this pathway involved in DNA virus siRNA production and amplification (DCL2, DCL3, DCL4, RDR6 and RDR2). Arabidopsis plants were infected by agroinoculation and the amount of viral DNA was measured by real-time qPCR. To gain more insight into the gene silencing suppression mechanism of V2, we generated Arabidopsis plants overexpressing the viral protein. Wild-type (Col-0) plants, as well as, plants containing the SUC-SUL hairpin or the AMPLICON (AMP) constructs were transformed with the same V2 expression cassette used for the gene silencing assays. Results: Like its begomoviral counterpart, BCTV V2 is a potent PTGS suppressor and produces an HR-like response in N. benthamiana plants when expressed from PVX. The molecular and genetic analysis of transgenic plants expressing V2 indicates that, as the begomoviral V2, BCTV V2 inhibits the RDR6/SGS3-dependent silencing pathway. Finally, infection assays in Arabidopsis mutants confirm the importance of the RDR6/SGS3 pathway in defence against curtoviruses, and reveal an additional RDR6/SGS3-independent gene-silencing suppression mechanism of V2. Conclusions: BCTV V2, as begomovirus V2 protein, suppresses PTGS by impairing the RDR6/SGS3 pathway. Keywords: Geminivirus, BCTV V2, RNA-silencing suppressor.

Full text

Study of the PTGS suppressor activity of V2 protein from geminivirus Beet curly top virus 0 ANA P. LUNA*, EDGAR A. RODRÍGUEZ-NEGRETE, GABRIEL MORILLA, LIPING WANG, ROSA LOZANO-DURÁN, ARACELI G. CASTILLO, AND EDUARDO R. BEJARANO *For correspondence (Ana P. Luna. Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora” (IHSM-UMA-CSIC), Área de Genética, Facultad de Ciencias, Universidad de Málaga, Campus de Teatinos s/n, E-29071 Málaga, Spain. Tel: +34 952131677; fax: +34 952132000; e-mail [email protected]. INTRODUCTION RESULTS BCTV V2 phenocopies rdr6 mutation in AMPLICON (AMP) and AMPxGFP lines. Expression of V2 from BCTV in transgenic AMPLICON (AMP) Arabidopsis lines. (c) Representative pictures of nontransformed AMPLICON plants (AMP) and T2 kanamycin-resistant plants from the transgenic lines V2-AMP1, V2-AMP3 and V2AMP5. (d) northern blot analysis to detect GFP siRNAs (siGFP) and sRNA U6 as loading control (e) RT-qPCR to measure V2 and GFP mRNA levels that were normalized to actin. Representative F1 plants resulting from the crosses of AMPLICON and GFP line, V2-AMP5 and GFP line (V2AMP5XGFP) or a homozygous plant AMPxGFP containing the rdr6-15 mutation (AMPxGFP rdr6). Pictures were taken from plants under visible (left column) or UV light using either the GFP2 filter (allows the chlorophyll autofluorescence, middle column), or the GFP3 filter (only shows GFP fluorescence, right column). BCTV V2 does not affect the RDR6 independent silencing of the endogenous SUL gene Expression of V2 from BCTV in transgenic SUC-SUL (SS) Arabidopsis lines. (a) Representative pictures of nontransformed (SS) and T2 kanamycin-resistant plants from the transgenic lines V2-SS1 and V2-SS2 (b) RT-qPCR to measure V2 mRNA levels that were normalized to actin Geminiviruses constitute a group of plant viruses with circular, single-stranded DNA genomes packaged within geminate particles that infect a wide range of plants1. Among the Geminiviridae family, the genus Mastrevirus, Begomovirus and Curtovirus comprise most of the viral species capable to infect dicotyledonous plants. Monopartite begomovirus and curtovirus possess similar genome structures, encoding six and seven multifunctional proteins, respectively2. In both cases, the virion sense strand contains two open reading frames (ORFs) (V2 and coat protein, CP), and a third one (V3) is present only in curtovirus; four ORFs are present in the complementary sense strand (Rep, C2, C3 and C4). In plants, RNA silencing is an important antiviral mechanism. All plant viruses examined to date encode at least one protein that suppresses antiviral silencing (VSR) 3,4. Geminiviruses must confront both transcriptional (TGS) and Post-Transcriptional Gene Silencing (PTGS) to achieve successful infections5,6. V2 from of Old Word begomoviruses has been described as a PTGS and TGS suppressor7,8,9,10,11,12,13,14. Besides begomovirus V2 is also involved in viral movement, it is required for full infection and elicits hypersensitive response (HR)-like cell death when expressed from a Potato virus X (PVX)-derived vector9,10,14,15,16. Less is known about the function of curtovirus V2. Although begomovirus and curtovirus V2 ORFs seem to be orthologous based on genome location and length, their homology at the protein level, which is highly conserved within each genus, is extremely poor. References: 1. Zerbini et al., 2017; 2. Fondong, 2013; 3. Csorba et al., 2015; 4. Pumplin & Voinnet, 2013; 5. Hanley-Bowdoin et al., 2013; 6. Pooggin, 2013; 7. Amin et al., 2011; 8. Chowda-Reddy et al., 2008; 9. Luna et al., 2012; 10. Sharma & Ikegami, 2010; 11. Sharma et al., 2010; 12. Zhang et al., 2012; 13. Zrachya et al., 2007;14. Wang et al., 2014; 15. Hak et al., 2015; 16. Iqbal et al., 2012; 17 Mubin et al., 2010. BCTV V2 is essential for infection and can be complemented by mutation in rdr6 or dcl2/4. Mock BCTV BCTV-ΔV2 Col 0 BCTV BCTV-∆V2 Relative amount of viral DNA * * + + + * + WT dcl2/4 rdr2 rdr6 0 1 2 3 4 Symptoms induced in Arabidopsis Col-0 plants agroinoculated with BCTV wildtype or V2 mutant (BCTV-∆V2) at 28 days after inoculation (dpi). As a negative control, plants were agroinoculated with the empty vector (mock). Analysis of viral DNA accumulation in Arabidopsis wild-type and mutant plants rdr2-1, rdr6-15 and dcl2/4 infected with BCTV or BCTV-∆V2. DNA was extracted from five to six plants in each condition at 28 dpi and quantified by qPCR using actin as reference gene and represented as the relative level compared to Col-0 plants infected with the wild-type BCTV (set to 1). Bars represent the mean +/- the standard error from three technical replicates obtained from DNA extracted from these five to six plants. Asterisks (*) indicate the BCTV-∆V2-infected sample that is statistically different from the BCTV-infected sample on each Arabidopsis background (*P<0.05), as determined by the Student’s t-test. Plus sign (+) indicate the infected samples that are statistically different from Col-0 plants infected with BCTV (+P<0.05). CONCLUSIONS In spite of limited sequence homology, BCTV V2, as its begomovirus counterpart: -is required for a systemic infection. -is a strong suppressor of intracellular PTGS by impairing the RDR6/SGS3 pathway. -does not impact local cell-to-cell silencing movement, but produces a delay in the spread of systemic silencing. BCTV V2 is a local PTGS suppressor (a) N. benthamiana wild-type leaf discs infiltrated with a mixture of two A. tumefaciens cultures expressing GFP and BCTV V2 under UV light at 4 dpi. P19 and the empty vector (C-) were used as controls. (b) Western to detect GFP protein. (c) northern blot analysis to detect GFP siRNAs and sRNA U6 as loading control. (d) Expression of viral protein V2 was confirmed by RT-semiquantitative PCR. BCTV V2 produces a delay in the spread of systemic silencing, but without impacting local cell-to-cell silencing movement (e) Nicotiana benthamiana 16c leaf discs infiltrated with two A. tumefaciens cultures expressing GFP and BCTV V2 under UV light at 4 dpi. P19 and the empty vector (C-) were used as controls. (f) GFP expression in the cells surrounding the agroinfiltrated area at 5 dpi. Bar, 2 mm. (g) Agroinfiltrated 16c plants under UV light at 19 (top panel) and 30 dpi (bottom panel).