scieee Open visual document viewer

Loss-of-function lesions impact B-cell development and fitness but are insufficient to drive CLL in mouse models

Hacken, Elisa ten,Yin, Shanye,Redd, Robert,Hernández-Sánchez, María,Clement, Kendell,Brunsting Hoffmann, Gabriela,Regis, Fara F.,Witten, Elizabeth,Li, Shuqiang,Neuberg, Donna,Pinello, Luca,Livak, Kenneth J.,Wu, Catherine J.

Abstract

This study was supported by grants from the National Institutes of Health/National Cancer Institute (P01 CA206978 and R01CA216273). E.t.H. is a scholar of the American Society of Hematology. S.Y. is supported by a research fellowship from the Lauri Strauss Leukemia Foundation and National Cancer Institute (R21 CA267527-01). M.H.S. has been supported by a Sara Borrell postdoctoral contract (CD19/00222) from the Instituto de Salud Carlos III (ISCIII), cofounded by Fondo Social Europeo “El Fondo Social Europeo invierte en tu futuro.” K.C. is supported by National Human Genome Research Institute Career Development Award K99HG011658. S.L. is supported by the National Cancer Institute Research Specialist Award (R50CA251956). L.P. is partially supported by National Human Genome Research Institute Genomic Innovator Award R35HG010717.

Full text

TO THE EDITOR: Loss-o - unc ion lesions impac B-cell de elopmen and fi ness bu a e insu ficien o d i e CLL in mouse models Elisa en Hacken, 1,2, *Shanye Yin, 1,2, *Robe Redd, 3 Ma ía He n´ andez S´ anchez, 4,5 Kendell Clemen , 6 Gab iela B uns ing Ho mann, 1 Fa a F. Regis, 1 Elizabe h Wi en, 1 Shuqiang Li, 7,8 Donna Neube g, 3 Luca Pinello, 6 Kenne h J. Li ak, 7,8 and Ca he ine J. Wu 1,2,8,9, * 1 Depa men o Medical Oncology, Dana-Fa be Cance Ins i u e, Bos on, MA; 2 Ha a d Medical School, Bos on, MA; 3 Depa men o Da a Science, Dana-Fa be Cance Ins i u e, Bos on, MA; 4 The Ins i u e o Cance Molecula and Cellula Biology–Cance Resea ch Cen e , Ins i u o de In es igaci ´ on Biom ´ edica de Salamanca, Uni e si y o Salamanca, Salamanca, Spain; 5 Depa amen o Biochemis y and Molecula Biology, Pha macy School, Uni e sidad Complu ense de Mad id, Mad id, Spain; 6 Cen e o Cance Resea ch, and Cen e o Compu a ional and In eg a i e Biology, Molecula Pa hology Uni , Massachusse s Gene al Hospi al, Bos on, MA; 7 T ansla ional Immunogenomics Lab, Dana-Fa be Cance Ins i u e, Bos on, MA; 8 B oad Ins i u e o Massachuse s Ins i u e o Technology and Ha a d, Camb idge, MA; and 9 Depa men o Medicine, B igham and Women’s Hospi al, Bos on, MA Mouse models a e indispensable ools o s udy he impac o gene ic al e a ions in cance . Only a ew s udies ha e hus a unde aken unc ional cha ac e iza ions o ecu en genomic-disco e ed gene mu a ions o ch onic lymphocy ic leukemia (CLL) 1 despi e ecen ad ances in gene ic enginee ing ha ha e inc easingly acili a ed an imp o ed abili y o assess he in i o e ec s o candida e disease d i e s. In his con ex , condi ional knockin and knockou s a egies ha e been applied o he s udy o indi idual lesions, including del(13q), modeled in he MDR mice, 2 he B-cell de elopmen al ac o Ikz 3, 3 o in he splicing ac o S 3b1 in combina ion wi h A m dele ion, 4 all o which ecapi ula e indolen CLL de el- opmen , consis en wi h he pheno ype o human disease. We hypo hesize ha he mos common loss-o - unc ion (LOF) pu a i e d i e s ypical o CLL (A m,T p53, Chd2, Bi c3, Mga, o Samhd1) 1,5 (supplemen al Figu e 1A-B) may a ec p eleukemic signaling, hus dys egula ing B-cell–in insic p osu i al pa hways. To add ess his ques ion, we de eloped a e sa ile pla o m o he in oduc ion o indi idual LOF lesions in i o in mu ine B cells. We gene a ed a ansplan model ha e ficien ly deli e s single guide RNAs (sgRNAs) o hema opoie ic s em and p ogeni o cells o s ains exp essing B-cell– es ic ed Cas9 (ie, Cd19-Cas9; Figu e 1A [le ]), hus gene a ing gene edi s only in de eloping Cas9-exp essing B cells and allowing he in oduc ion o inse ions-dele ions (indels) a he a ge locus, leading o LOF o he a ge gene. Fi s , we in e c ossed mice ca ying B-cell– es ic ed C e exp ession (Cd19-c e) wi h hose ca ying condi ional Cas9–g een fluo escen p o ein (Cas9-GFP) 6 o gene a e a s ain exp essing B-cell– es ic ed Cas9 (Cd19-Cas9) (Figu e 1A [le ]). Nex , we op imized he in i o enginee ing o ea ly s em and p ogeni o cells (ie, Lin - Sca-1 + c-ki + [LSK]) om Cd19-Cas9 mice using len i i us exp essing sgRNAs (mChe y + ) a ge ing A m,T p53, Chd2, Bi c3, Mga, o Samhd1. We chose LSKs because o hei high ansducibili y and long- e m epopula ing po en ial and designed sgRNAs a ge ing ea ly exonic egions in each o he 6 genes o allow ea ly dis up ion o he p o ein sequence (supplemen al Table 1). Las ly, we ans- plan ed he single sgRNA-exp essing LSKs in o suble hally i adia ed CD45.1 ecipien mice. We confi med he consis en p esence o ~45% o 85% gene-edi ed sequences (>70% ca ying ame- shi mu a ions, he majo i y esul ing om 1 o 2 base pai indels; supplemen al Figu e 2) in edi ed B cells (GFP + mChe y + , isola ed om he pe iphe al blood by cell so ing), bu no in T cells o monocy es, a 4 mon hs a e ansplan by polyme ase chain eac ion-based a ge ed deep sequencing (analyzed by CRISPResso2 so wa e 7 ;Figu e 1A [ igh ]; supplemen al Figu e 1C-D). A mino i y o lesions (<30%) led o in- ame al e a ions (ie, ±3 nucleo ides in leng h). Rep oducible on- a ge edi ing Submi ed 11 Oc obe 2022; accep ed 23 No embe 2022; p epublished online on Blood Ad ances Fi s Edi ion 7 Decembe 2022; inal e sion published online 11 Augus 2023. h ps://doi.o g/10.1182/bloodad ances.2022009135. *E.H., S.Y., and C.J.W. con ibu ed equally o his s udy. Mouse RNA-seq da a epo ed in his a icle ha e been deposi ed in he Gene Exp ession Omnibus da abase (accession numbe GSE197061). Da a a e a ailable on eques om he co esponding au ho , Ca he ine J. Wu (cwu@ pa ne s.o g). The ull- ex e sion o his a icle con ains a da a supplemen . © 2023 by The Ame ican Socie y o Hema ology. Licensed unde C ea i e Commons A ibu ion-NonComme cial-NoDe i a i es 4.0 In e na ional (CC BY-NC-ND 4.0), pe mi ing only noncomme cial, nonde i a i e use wi h a ibu ion. All o he igh s ese ed. RESEARCH LETTER 4514 22 AUGUST 2023 •VOLUME 7, NUMBER 16 Downloaded om h p://ashpublica ions.o g/bloodad ances/a icle-pd /7/16/4514/2072565/blooda_ad -2022-009135-main.pd by gues on 20 Feb ua y 2024 was de ec ed ac oss he 6 coho s (wi h no de ec able gene edi s in 24 pu a i e o - a ge s), pe single-cell DNA-sequencing analysis (DNA-seq) o 1787 single B cells (supplemen al Figu e 1E). All LOF mu a ions we e ound o con e a su i al ad an age o B cells compa ed wi h he non- a ge ing sc amble con ol when exposed o he mi ogenic s imuli lipopolysaccha ide (LPS) and in e leukin-4 (IL-4) o 72 hou s in i o (n = 5 pe g oup; P< .05; Figu e 1B). Likewise, ci cula ing edi ed B cells om animals ollowing ans- plan we e ele a ed ac oss he mu a ed models compa ed wi h he non- a ge ing con ol line (N -1;P< .05; RM-ANOVA; Figu e 1C). Despi e hese ea ly changes, mos ly ma ked a 4 mon hs a e ansplan , a ime poin a which B cells a e conside ed o achie e op imal hos econs i u ion, none o he single-edi ed animals (n = 10 pe g oup) de eloped clonal B220 + CD5 + Igκ + ci cula ing B-cell expansions o e 24-mon hs o obse a ion. Mga- and Chd2- deple ed animals showed ajec o ies ha we e pa icula ly sho - li ed (supplemen al Figu e 1F; P<.0002), in line wi h limi ed in i o pe sis ence obse ed in p e ious cell line s udies. 8 These obse a ions collec i ely sugges he dual possibili y o limi ed cell- in insic dys egula ion o p osu i al pa hways in oduced by hese lesions and/o insu ficien cell-ex insic con ibu ion o leukemia pheno ypes in hese o he wise heal hy animals. We asked whe he any o he modeled lesions (also equen d i e s o o he agg essi e B-cell malignancies, including di use la ge B-cell lymphoma) 9 would a ec B-cell de elopmen al ajec o ies (supplemen al Figu e 3A; supplemen al Table 2). Al hough ansi ional B-cell popula ion abundance was unchanged ac oss geno ype- defined g oups (supplemen al Figu e 3B-C), Mga-deple ed mice showed inc eased ma ginal zone (P= .003) (wi h conco dan ly dec eased ollicula B cells) and ge minal cen e (P= .009) splenic subpopula ions (Figu e 2A-B; supplemen al Figu e 3D). We also iden ified an abundance o pe i oneal B1a and a conco dan dec ease in B1b cells (P<.05;Figu e 2C; supplemen al Figu e 3E), sugges ing a ole o Mga in egula ing ma u e B-cell de elopmen and lineage-specifica ion. In pa icula , he inc eased spon aneous ge minal cen e o ma ion may ela e o he lymphomogenic ac i i y o his lesion, whe eas inc eased CD5 + B1a pe i oneal B cells may ins ead ela e o CLL p edisposi ion, as B1a cells a e conside ed o be he cell o o igin o mu ine CLL. 10 Gi en he known ole o Mga as nega i e egula o o MYC a ge s in o he cellula con ex s, 11 we u he asked whe he he obse ed B-cell de elopmen al pheno ypes could esul om abe an MYC a ge ac i a ion in ma u e B cells. To his end, we analyzed he BN -1 Ga ed on li e 1 5 4 3 0 –3 2345 GFP (log) mChe y (log) 10.9% T p53 indel 1 5 4 3 0 –3 2345 GFP (log) mChe y (log) 88.7% Bi c3indel A mindel Samhd1indel T p53indel Chd2indel Mgaindel N -1 0123 P (all s. N -1) < .05 n = 5/g oup Fold inc ease a day 3 o e day 0 (edi ed s. unedi ed) C %GFP+mChe y+B cells 30 20 10 0 248121824 Mga P = .01 N -1 248121824 Chd2 P = .05 24 8 12 18 24 T p53 P = .04 30 20 10 0 24 8 12 18 24 Samhd1 P = .03 24 8 12 18 24 A m P = .002 24 8 12 18 24 Bi c3 P = .05 Mon hs pos - ansplan Cd19c e/c e Cas9/Cas9 Cd19-Cas9 (8-12 week) X CD45.2 LSKs CD45.2 LSKs CD45.1 N -1 Mga Chd2 A m Bi c3 Samhd1 T p53 LSK isola ion sgRNA (single) T ansplan T ansduc ion LSK enginee ing Es ablishmen o B-cell es ic ed single-edi ed coho s A Bi c3indel A mindel Samhd1indel T p53indel Chd2indel Mgaindel N -1 unedi ed indels 0 % 89.1% 80.6% 90.8% 84.7% 45.7% 63.9% F ameshi In- ame 87.779.189.676.2 72 86.6 Figu e 1. Indi idual CLL LOF lesions al e ma u e B-cell su i al bu a e insu ficien o d i e leukemia in mouse models. (A) T ansplan schema and gene a ion o singly-edi ed mouse lines. LSKs we e len i i ally ans ec ed in i o wi h sgRNAs a ge ing he single LOFs (o a non- a ge ing sc amble con ol, ie, N -1) in addi ion o he mChe y ma ke be o e he eng a men in o suble hally i adia ed CD45.1 ecipien mice. PCR-based a ge ed deep sequencing o DNA om pe iphe al blood edi ed B cells (ie, GFP + mChe y + ) was used o confi m p esence o ~45% o 85% gene edi s (>70% ameshi mu a ions) ac oss he 6 genes. (B) In i o su i al o no mal B cells isola ed om he spleen o 5 animals pe g oup (6 LOF-exp essing s ains and 1 N -1) and cul u ed in i o in p esence o LPS+IL4 o 3 days. Fold inc ease o e day 0 is displayed alongside ep esen a i e flow cy ome ic plo s om 1 N -1 and 1 T p53-deple ed sample. P- alue lowe o equal o 0.05, ANOVA wi h Dunne ’s co ec ion o mul iple compa isons. (C) Pe cen (%) GFP + mChe y + B cells as assessed on longi udinal bleeds o e he cou se o 24 mon hs, in 10 animals pe g oup. *P- alue lowe o equal o 0.05; lowe o equal o 0.05; RM-ANOVA, epea ed measu es analysis o a iance. 22 AUGUST 2023 •VOLUME 7, NUMBER 16 RESEARCH LETTER 4515 Downloaded om h p://ashpublica ions.o g/bloodad ances/a icle-pd /7/16/4514/2072565/blooda_ad -2022-009135-main.pd by gues on 20 Feb ua y 2024 ansc ip omes o gene-edi ed ma u e B cells (GFP + mChe y + ) and compa ed hem wi h hose o unedi ed (GFP + mChe y - )B cells isola ed om he same animals (2 animals pe g oup; Figu e 2D). Analyses we e pe o med 4 mon hs a e ansplan because his was obse ed o be he peak o edi ed B-cell abun- dance ac oss coho s (Figu e 1C). Via En ich analysis, using he Molecula Signa u es Da abase (MSigDB), we iden ified en ichmen in PI3K/AKT/mTOR and No ch signaling and dimin- ished in e e on gamma, p53, and apop o ic gene exp ession in Mga-deple ed cells compa ed wi h hose in he con ol unedi ed ac ion ( alse disco e y a e <0.10; Figu e 2E; supplemen al Tables 3-4). To iden i y di ec MYC a ge s a ec ed by loss o Mga, we pe o med an in eg a ed analysis o Mga-deple ed RNA-seq and exis ing ch oma in immunop ecipi a ion–seq (ChIP- seq) da a o MYC om mouse B cells exposed o LPS s imula ion o 8 hou s 12 using CISTROME-GO, 13 which allows so ing o di ec a ge s o specific ansc ip ion ac o s based on he in e- g a i e anking o ansc ip ion ac o –binding (ChIP-seq) com- bined wi h change in gene exp ession (RNA-seq). Ou esul s showed ha Mga deple ion ac i a ed ansc ip ion o se e al MYC a ge genes wi h ele ance o B-cell de elopmen al biology (supplemen al Table 5), including he B-cell ecep o signaling kinase lymphocy e cell-specific p o ein- y osine kinase (Lck), he cell cycle and Wn egula o s S ag3 and P p s and he ibosomal p o ein Rps29 in esponse o LPS (Figu e 2F; supplemen al Figu e 4). No ably, di ec MYC a ge s we e mo e likely o be N -1 –3 5 4 3 0 –3 03 4 5 CD21 (log) CD23 (log) 9.1% Mgaindel –3 5 4 3 0 –3 03 4 5 CD21 (log) CD23 (log) 18.6% Bi c3indel A mindel Samhd1indel T p53indel Chd2indel Mgaindel N -1 0 5 10 15 20 25 % MZ B cells P = .003 A N -1 –3 5 4 3 0 –3 03 4 5 CD38 (log) CD95 (log) <1% Mgaindel –3 5 4 3 0 –3 03 4 5 CD38 (log) CD95 (log) 3.4% Bi c3indel A mindel Samhd1indel T p53indel Chd2indel Mgaindel N -1 012345 % GC B cells P = .009 B C Bi c3 indel A m indel Samhd1 indel T p53 indel Chd2 indel Mga indel N -1 0 20406080 % B1a B cells P = .0005 N -1 –3 5 4 3 0 –3 03 4 5 CD5 (log) B220 (log) 34.3% Mgaindel –3 5 4 3 0 –3 03 4 5 CD5 (log) B220 (log) 62.3% D –3 5B cells 4 3 0 –3 03 4 5 B220 (log) CD45.2 (log) –3 5Unedi ed Edi ed 4 3 0 –3 0 RNA-seq RNA-seq Pai ed DGE/En ich CISTROME-GO 345 GFP (log) mChe y (log) E In e e on Gamma Response Wn -be a Ca enin Signaling In e e on Alpha Response IL-2/STAT5 Signaling Apop osis p53 Pa hway KRAS Signaling Up PI3K/AKT/mTOR Signaling No ch Signaling Hypoxia Mi o ic Spindle 42024 UPDOWN –Log(P) F MYC ChIP Baseline LPS Mgaw _1 Mgaw _2 Mgaindel_1 Mgaindel_2 Lck G MYC a ge s Log2FC 2 1 –1 0 n = 69 P = .001 n = 24 Figu e 2. Mga mu a ion al e s B-cell de elopmen al pa hways. (A) Pe cen (%) abundance o MZ B cells, (B) GC B cells in spleen and (C) B1a cells in pe i oneum p epa a ions om 5 animals pe g oup, including non- a ge ing con ols. **P- alue, lowe o equal o 0.01, ***P- alue, lowe o equal o 0.001, ANOVA wi h Dunne 's co ec ion o mul iple compa isons. (D) Flow-plo o edi ed s unedi ed ac ions analyzed ia RNA-seq and CISTROME-GO. (E) Pa hway en ichmen analysis o Mga-deple ed s unedi ed cells, pe En ich . (F) IGV sc eensho o MYC ChIP-seq da a o mouse B cells wi h o wi hou LPS ea men and RNA-seq da a o Lck gene exp ession in edi ed (Mga indel ) and unedi ed (Mga WT ) ac ions o 2 independen mice.(G) Change in exp ession (Mga indel s Mga WT ) o genes ha we e di ec Myc a ge s upon LPS s imuli, as assessed by CISTROME-GO analysis. ***P- alue, lowe o equal o 0.001; χ 2 es . GC, ge minal cen e ; IGV, in eg a i e genomics iewe ; MZ, ma ginal zone. 4516 RESEARCH LETTER 22 AUGUST 2023 •VOLUME 7, NUMBER 16 Downloaded om h p://ashpublica ions.o g/bloodad ances/a icle-pd /7/16/4514/2072565/blooda_ad -2022-009135-main.pd by gues on 20 Feb ua y 2024 up egula ed han Mga-deple ed cells, consis en wi h MYC ac i- a ion (P= .001; χ 2 es ; Figu e 2G). Toge he , hese esul s suppo he no ion ha Mga plays a unique ole in egula ing MYC a ge s in ol ed in B-cell p oli e a ion and di e en ia ion, esul ing in a di ec impac on cell a e de e mina ion o ma u e naï e B cells. In conclusion, we demons a e ha ou models ep esen a aluable and e sa ile pla o m o he s udy o indi idual gene ic lesions in a p eleukemic B-cell con ex . We show ha in oduc ion o indi idual CLL LOF mu a ions in ma u ing B cells can al e p osu i al and B-cell de elopmen al pa hways and inc ease cellula fi ness in i o and in i o. We u he obse e ha indi idually hey a e insu ficien o d i e leukemia and mo i a e s udies o e alua ing he e ec s o combina- o ial asso men o lesions in B-cell leukemogenesis. Acknowledgmen s: The au ho s hank membe s o he Wu lab o he aluable discussions. The au ho s a e also g a e ul o excellen echnical assis ance om he Dana-Fa be Cance Ins i- u e Animal Resea ch Facili y and he Dana-Fabe Cance Ins i u e Flow Cy ome y Co e. This s udy was suppo ed by g an s om he Na ional Ins i u es o Heal h/Na ional Cance Ins i u e (P01 CA206978 and R01CA216273). E. .H. is a schola o he Ame - ican Socie y o Hema ology. S.Y. is suppo ed by a esea ch ellowship om he Lau i S auss Leukemia Founda ion and Na ional Cance Ins i u e (R21 CA267527-01). M.H.S. has been suppo ed by a Sa a Bo ell pos doc o al con ac (CD19/00222) om he Ins i u o de Salud Ca los III (ISCIII), co ounded by Fondo Social Eu opeo “El Fondo Social Eu opeo in ie e en u u u o.”K.C. is suppo ed by Na ional Human Genome Resea ch Ins i u e Ca ee De elopmen Awa d K99HG011658. S.L. is suppo ed by he Na ional Cance Ins i u e Resea ch Specialis Awa d (R50CA251956). L.P. is pa ially suppo ed by Na ional Human Genome Resea ch Ins i u e Genomic Inno a o Awa d R35HG010717. Con ibu ion: E. .H., S.Y., and C.J.W. designed he s udy and w o e he manusc ip ; E. .H. gene a ed mouse models, pe o med mos expe imen s, and analyzed da a; S.Y. pe o med RNA-seq and ChIP- seq analyses; S.L. pe o med he single-cell DNA-seq expe imen s; R.R., M.H.S, K.C., L.P., K.J.L., and D.N. assis ed wi h s udy design and da a analysis; G.B.H., F.F.R., and E.W. p o ided echnical suppo ; and C.J.W. p o ided o e all supe ision o he s udy. Conflic -o -in e es disclosu e: C.J.W. is an equi y holde o BioNTech Inc. and ecei es esea ch unding om Pha macyclics. L.P. has financial in e es s in Edily ics Inc. K.C. is an employee, sha eholde , and o fice o Edily ics Inc. The in e es s o L.P. and K.C. we e e iewed and a e managed by Massachuse s Gene al Hospi al and Pa ne s Heal hCa e in acco dance wi h hei conflic - o -in e es policies. The emaining au ho s decla e no compe ing financial in e es s. ORCID p ofiles: E. .H., 0000-0003-1573-8799; S.Y., 0000- 0001-9116-5238; R.R., 0000-0002-1329-5288; M.H.S., 0000- 0001-9968-2782; K.C., 0000-0003-3808-0811; G.B.H., 0000- 0001-7758-898X; K.J.L., 0000-0001-9105-5856; C.J.W., 0000- 0002-3348-5054. Co espondence: Ca he ine J. Wu, Depa men o Medical Oncology, Dana-Fa be Cance Ins i u e, 450 B ookline A e, Dana Building, Room DA-520, Bos on, MA 02115; email: cwu@ pa ne s.o g. Re e ences 1. Knisbache BA, Lin Z, Hahn CK, e al. Molecula map o ch onic lymphocy ic leukemia and i s impac on ou come. Na Gene . 2022; 54(11):1664-1674. 2. Klein U, Lia M, C espo M, e al. The DLEU2/miR-15a/16-1 clus e con ols B cell p oli e a ion and i s dele ion leads o ch onic lymphocy ic leukemia. Cance Cell. 2010;17(1):28-40. 3. Laza ian G, Yin S, Ten Hacken E, e al. A ho spo mu a ion in ansc ip ion ac o IKZF3 d i es B cell neoplasia ia ansc ip ional dys egula ion. Cance Cell. in p ess. 2021;39(3):380-393.e8. 4. Yin S, Gambe RG, Sun J, e al. A mu ine model o ch onic lymphocy ic leukemia based on b cell- es ic ed exp ession o S 3b1 mu a ion and A m dele ion. Cance Cell. 2019;35(2):283-296.e285. 5. Landau DA, Tausch E, Taylo -Weine AN, e al. Mu a ions d i ing CLL and hei e olu ion in p og ession and elapse. Na u e. 2015; 526(7574):525-530. 6. Pla RJ, Chen S, Zhou Y, e al. CRISPR-Cas9 knockin mice o genome edi ing and cance modeling. Cell. 2014;159(2):440-455. 7. Clemen K, Rees H, Can e MC, e al. CRISPResso2 p o ides accu a e and apid genome edi ing sequence analysis. Na Bio echnol. 2019;37(3):224-226. 8. Ten Hacken E, Clemen K, Li S, e al. High h oughpu single-cell de ec ion o mul iplex CRISPR-edi ed gene modifica ions. Genome Biol. 2020;21(1):266. 9. Reddy A, Zhang J, Da is NS, e al. Gene ic and unc ional d i e s o di use la ge B cell lymphoma. Cell. 2017;171(2):481-494.e415. 10. Hayakawa K, Fo mica AM, B ill-Dasho J, e al. Ea ly gene a ed B1 B cells wi h es ic ed BCRs become ch onic lymphocy ic leukemia wi h con inued c-Myc and low Bm exp ession. J Exp Med. 2016;213(13): 3007-3024. 11. Llaba a P, Mi suishi Y, Choi PS, e al. Mul i-omics analysis iden ifies MGA as a nega i e egula o o he MYC pa hway in lung adenoca cinoma. Mol Cance Res. 2020;18(4):574-584. 12. Tesi A, de P e is S, Fu lan M, e al. An ea ly Myc-dependen ansc ip ional p og am o ches a es cell g ow h du ing B-cell ac i a ion. EMBO Rep. 2019;20(9):e47987. 13. Li S, Wan C, Zheng R, e al. Cis ome-GO: a web se e o unc ional en ichmen analysis o ansc ip ion ac o ChIP-seq peaks. Nucleic Acids Res. 2019;47(W1):W206-W211. 22 AUGUST 2023 •VOLUME 7, NUMBER 16 RESEARCH LETTER 4517 Downloaded om h p://ashpublica ions.o g/bloodad ances/a icle-pd /7/16/4514/2072565/blooda_ad -2022-009135-main.pd by gues on 20 Feb ua y 2024