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Digital image analysis of the tissue surface areas of site-designated and bilaterally pooled prostate biopsies

Koivusalo, Laura,Kaipia, Antti,Kujala, Paula,Isola, Jorma,Tolonen, Teemu T

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Summa y. Ini ial epo s abou he leng h o bila e ally pooled biopsies showed ala ming issue loss compa ed o indi idual biopsies, bu he cu en unde s anding o “noodle biopsies” and be e embedding echniques may ha e imp o ed hei quali y. He e, we implemen ed digi al image analysis o s udy he di e ences in issue su ace a eas be ween indi idual and pooled co es. P os a e biopsy epo s om 1242 consecu i e pa ien s we e e iewed. U ologis -dependen bias on he biopsy quali y was elimina ed by iden i ying ou u ologis s who submi ed equally indi idual and bila e ally pooled biopsies. Digi al image analysis was applied o he issue su ace a eas o 936 i ual slides con aining 1440 biopsy co es (12 co es pe pa ien x 120 pa ien s) aken by he ou u ologis s. The median ( ange) su ace a eas we e 73.8 mm2(40.1-102.5) o he si e-designa ed (n=57) and 77.1 mm2(49.5-119.2) o he bila e ally pooled biopsies (n=63) (p=0.19). Fo h ee u ologis s, he median su ace a eas we e 69.5 mm2(60.4-93.2), 75.5 mm2(48.2-98.7) and 78.2 mm2(47.1-92.7) o he si e-designa ed and 79.2 mm2(49.5-116.4), 69.3 mm2 (49.6-119.2) and 79.2 mm2(55.1-96.7) o he pooled biopsies, espec i ely (p=0.58-0.75). Fo one u ologis , he median su ace a ea was ma ginally highe o he pooled biopsies, 68.1 mm2(40.1-102.5) s. 81.6 mm2 (62.7-108.8) (p=0.03). In conclusion, he his ological yields o indi idual and pooled p os a e biopsies we e p ac ically equal. The esul s should no be conside ed as a ecommenda ion o inc easingly submi unspeci ied bila e al co es bu o encou age pa hology labo a o ies o embed and cu all ecei ed p os a e biopsies wi h special a en ion, ega dless o submission ype. Key wo ds: P os a e needle biopsy, Biopsy quali y, Digi al image analysis, Guidelines In oduc ion Diagnosis o p os a e cance is based on he his ological e alua ion o p os a e biopsies, and he accu acy o he diagnosis depends on he quali y o samples on he mic oscope slide. The commonly accep ed biopsy scheme consis s o 10-12 sys ema ic needle co es wi h addi ional co es om suspec a eas (P es i, 2007; Ukimu a e al., 2013), bu submission and embedding p o ocols a e a iables (Va ma e al., 2013). Indi idually submi ed co es a e ecommended by he in e na ional guidelines (Van de Kwas e al., 2003, 2013; P es i, 2007; Ukimu a e al., 2013), bu some u ologis s p e e submi ing less labo -in ensi e bila e al biopsies, depending on he clinical si ua ion. Acco ding o a ecen su ey, app oxima ely hal o Eu opean pa hology labo a o ies s ill ecei e bila e al biopsies pooled in wo specimen con aine s, whe eas only 40 % ecei ed all p os a e biopsy co es in sepa a e ials (Va ma e al., 2013). Because o high p e alence o p os a e cance and he la ge numbe o co es pe biopsy se , pa hology labo a o ies ha e become inc easingly awa e o he cos s o p os a e biopsy handling. Pooling p os a e biopsy Digi al image analysis o he issue su ace a eas o si e-designa ed and bila e ally pooled p os a e biopsies Lau a Koi usalo1,2, An i Kaipia1, Paula Kujala2, Jo ma Isola3and Teemu T. Tolonen2,3 1Depa men o Su ge y, Sa akun a Hospi al Dis ic , Po i, 2Depa men o Pa hology, Fimlab Labo a o ies, Tampe e Uni e si y Hospi al and 3Depa men o Cance Biology, BioMediTech, Uni e si y o Tampe e, Tampe e, Finland His ol His opa hol (2018) 33: 399-405 h p://www.hh.um.es O p in eques s o: Teemu T. Tolonen, Depa men o Pa hology, Fimlab Labo a o ies, Bioka u 4, 33520 Tampe e, Finland. e-mail: [email p o ec ed] DOI: 10.14670/HH-11-940 His ology and His opa hology F om Cell Biology o Tissue Enginee ing co es may educe he cos s o biopsy p ocessing, bu i is no encou aged by he in e na ional guidelines. One majo conce n is ha he quali y ob ained om pooled p os a e biopsy is no adequa e o p ope diagnosis, because single co es a e easie o align in he pa a in block o maximal su ace a ea ep esen a ion han mul iple co es (Kao e al., 2002; Boccon-Gibod e al., 2004; Gup a e al., 2004). Cu en guidelines by he ERSPC (Eu opean Randomized S udy o Sc eening o P os a e Cance ) commi ee allow he embedding o up o h ee co es in he same pa a in block, p o ided ha p ope p e-embedding me hods a e used o a oid cu ling and loa ing o he biopsies (Roga sch e al., 2000; Be accini e al., 2007; Van de Kwas e al., 2013). F om a na ow quali y poin o iew, he maximum numbe o biopsies in one block may be a ma e o echnique as in ou p e ious s udy, he numbe o co es (one o nine) embedded o a single pa a in block did no a ec he leng h o he biopsies (Tolonen e al., 2015). Digi al image analysis is inc easingly used in pa hology due o ad ancing slide scanne and s o age echnology and i is p esumably he mos accu a e me hod o de e mining biopsy su ace a ea. Because in ou p e ious wo k, he leng hs o bila e ally pooled biopsies we e unexpec edly high (Tolonen e al., 2015), we wan ed o u he e alua e whe he embedding six biopsies o a single pa a in block would ha e an impac on he ac ual his ological yields, and applied digi al image analysis o he co e slice su ace a eas o he whole slide images o he p os a e biopsies. A Tampe e Uni e si y Hospi al (TAUH) dis ic , i is s ill mo e common o sample bila e ally pooled biopsies han indi idual co es, which may po en ially in oduce a bias o he esul s. The e o e, we also elimina ed he ope a o -dependen bias on biopsy quali y (Van de Kwas e al., 2013) by iden i ying u ologis s who ook bo h specimen ypes equally, and by analyzing hei specimens indi idually acco ding o he u ologis . Ma e ials and me hods The s udy was conduc ed unde app o al o he E hical Commi ee o Tampe e Uni e si y Hospi al, e e ence numbe R03203. We e ospec i ely sc eened 1242 consecu i e p os a e needle biopsy cases e alua ed in he Depa men o Pa hology a Fimlab Labo a o ies be ween Ma ch 2013 and Sep embe 2014 om he pa hology da abase o Fimlab Labo a o ies. The biopsies had been aken om pa ien s wi h ele a ed PSA- alues and/o suspec indings in digi al ec al examina ion. All biopsies had been aken unde ans ec al ul asound guidance using an 18-gauge needle biopsy gun wi h an 18-mm sample no ch (Ba d Pe iphe al Vascula , Temple, AZ, U.S.A., e no. MC 1825) and we e placed in o 10% bu e ed o malin ials di ec ly om he biopsy needle. All p os a e biopsies we e p ocessed a Fimlab Labo a o ies. The con en s o each specimen ial we e s aigh ened in he issue casse e be ween wo sponges wi h o ceps and p ocessed be ween wo sponges p e- e ed wi h o malin. The embedding p ocess was “as usual” and essen ially he same o bo h indi idually submi ed and pooled co es: he me allic issue mold was pa ly illed wi h ho pa a in and placed on he hea ed pla e o he embedding s a ion, and hen he s aigh ened biopsy co es we e ans e ed o he bo om o he mold wi h o ceps and cooled down on he cold pla e. No special equipmen o embedding was used. Tissue ink was no u ilized o iden i y biopsy loca ion. The con en s o one casse e we e embedded in o one block, esul ing in 12 blocks o indi idually submi ed co es and wo blocks o pooled co es. The blocks we e sec ioned and s ained ou inely wi h hema oxylin-eosin s ain (H&E). The biopsy cases in he pa hology da abase we e ca ego ized based on he submission and embedding me hod (12 indi idual co es, 6+6 pooled co es, o o he ). The cases we e ca ego ized based on bo h u ologis s’ e e als and pa hologis s’ epo s in he TAUH pa hology da abase. Fou u ologis s who had submi ed app oxima ely equal amoun s o bo h indi idual co es and bila e ally pooled biopsy co es we e iden i ied, and hei samples we e e ie ed om he sample a chi es. The ype o biopsy was e i ied om he o iginal mic oscope slides, and only cases con aining exac ly 12 co es we e included in he s udy. The inclusion scheme and ypical se s o mic oscope slides o indi idually submi ed and unspeci ied bila e al biopsies a e illus a ed in (Fig. 1). The mic oscope slides o indi idual co es con ained usually wo o h ee, bu occasionally up o six slices pe co e, always esul ing in one mic oscope slide. Pooled co es we e consis en ly cu on ou le els, esul ing in wo mic oscope slides. The mic oscope slides we e scanned using an Ape io AT2 whole slide scanne (Leica Biosys ems, Nussloch, Ge many) using 20x magni ica ion wi h a esolu ion o 0.5 μm/pixel. The scanned i ual slides we e con e ed in o JPEG2000- iles using JP2 WSI Con e e so wa e, e sion 1.0.2 (BioMediTech, Uni e si y o Tampe e, Tampe e, Finland). The JPEG2000- iles we e hen opened using JVS iew i ual mic oscope so wa e, e sion 1.2 (Uni e si y o Tampe e, Tampe e, Finland), which allowed expo a ion o he images o he image analysis so wa e ImageJ, e sion 1.48 (Na ional Ins i u e o Heal h, USA). Wi h ImageJ, he snapsho images om i ual slides we e analyzed o de e mine he o al a ea a ailable o his opa hological e alua ion. Image analysis To ans o m he images in o a o m ha could be analyzed, we c ea ed a mac o sc ip o ImageJ. The unc ion o he mac o is illus a ed s ep by s ep in Fig. 2, and he ull mac o is p o ided in Table 1. Fi s , o sepa a e he issue sample om he backg ound, a h eshold was applied o he image. We used expe imen ally de e mined h eshold alues o emo e mos a i ac s and o ecognize he maximum amoun o 400 Digi al image analysis o he issue su ace a eas o p os a e biopsies issue. Second, he pixels emaining ou side o he sample a ea a e h esholding we e emo ed as ou lie s. We de ined he maximum size o ou lie s o be 2 pixels. Thi d, we used he “Fill holes” unc ion o ill he emp y spaces in he sample a ea because he gland s uc u es o p os a e issue a e pa o he co e su ace a ea. The ac ual su ace a ea measu emen s we e pe o med sepa a ely o each pa a in block slice image u ilizing he “Analyze pa icles” unc ion o ImageJ. All o he slice images ob ained om each block we e analyzed. Because he numbe o slices om each block a ied, we used he a e age o he wo bes (i.e., la ges su ace a ea) slices om each o ob ain he leas biased es ima e o compa ing he biopsy quali y o he wo sample ypes. Fo indi idual co es, he a e age a ea measu emen o each co e was summed o gi e he o al su ace a ea o he biopsy. Fo he pooled co es, he a e age combined a ea o he six co es om he le and he igh we e summed. S a is ical analysis The s a is ical signi icance be ween he su ace a ea measu emen s o indi idually submi ed and bila e ally pooled co es was de e mined using he Wilcoxon-Mann- Whi ney U- es a 95 % con idence le el (p=0.05). To accoun o ope a o -dependen a ia ion, he signi icance es ing was pe o med be ween each u ologis ’s 12 indi idual and pooled samples. The s a is ical analysis was pe o med wi h IBM SPSS S a is ics, e sion 22. Resul s Based on he w i en epo s o he pa hology da abase, 202 (16.3 %) o he o al 1242 cases we e iden i ied as indi idually submi ed biopsies, and 613 (49.4 %) we e ca ego ized as pooled bila e al biopsies. A o al o 427 (34.4 %) cases we e ca ego ized as “o he ”, 401 Digi al image analysis o he issue su ace a eas o p os a e biopsies Fig. 1. A. Inclusion scheme o he cases o he s udy. B. An example o a ypical mic oscope slide a ays bila e ally pooled and si e-designa ed p os a e biopsies. including cases whe e he numbe and submission ype o biopsy co es was una ailable (37 cases). O e 20 di e en u ologis s om Tampe e Uni e si y Hospi al dis ic con ibu ed o he 1242 samples submi ed o e alua ion a Fimlab Labo a o ies du ing he pe iod o in es iga ion. The ou u ologis s whose samples we e included in he s udy a e deno ed by he numbe s 1-4. The ou u ologis s con ibu ed 16% o all o he samples du ing his ime. U ologis s 1-4 we e all expe ienced in aking p os a e needle biopsies wi h 10, 22, 16 and 6 yea s o expe ience, espec i ely. The o e all median ( ange) su ace a eas we e simila o bo h submission ypes, 73.8 mm2(40.1- 102.5) o he si e-designa ed (n=57) and 77.1 mm2 (49.5-119.2) o he bila e ally pooled biopsies (n=63) (p=0.19). In addi ion, s a is ical signi icance was calcula ed sepa a ely o each u ologis ’s samples (Fig. 3). The only s a is ically signi ican di e ence was ound in u ologis 4’s biopsies, wi h he pooled co e biopsies ha ing ma ginally la ge issue su ace a eas han he indi idual co es (p=0.03). Discussion Si e-designa ed indi idual p os a ic needle biopsies a e a o ed by all cu en in e na ional guidelines, bu depending on he pa hology labo a o y and egion, i is no uncommon o ecei e pooled biopsies submi ed by he u ologis s (Bied zycki e al., 2003; Va ma e al., 2013; Tolonen e al., 2015). Al hough poo mul i- embedding echnique can lead o se e ely educed biopsy leng h (Y an is e al., 2002), cu en awa eness o he “noodle biopsies” and paying mo e a en ion o he embedding p ocess should ha e imp o ed he quali y o pooled biopsies. Ou aim was o compa e he issue su ace a eas o indi idual s. pooled co es in a pa hology labo a o y wi h expe ience in handling bo h submission ypes. Wi h he eme ging digi al pa hology, he e is an ongoing pa adigm shi om a ule o high- esolu ion image analysis o digi ized slides. In he p esen s udy, we applied digi al image analysis o he issue su ace a eas o 936 i ual slides con aining 684 indi idually embedded and 756 bila e ally pooled biopsy co es sliced in 2-4 planes. In addi ion, we ied o elimina e he ope a o -dependen bias (Van de Kwas e al., 2013) by selec ing u ologis s pe o ming equally bo h submission ypes, and compa ing su ace a eas o sepa a ely embedded and pooled biopsies indi idually acco ding o he u ologis . The o e all median issue su ace a eas we e simila o 12 indi idually submi ed (73.8 mm2) and bila e ally pooled 6+6 co es (77.1 mm2) (p=0.19), and he e we e no signi ican di e ences be ween each u ologis s indi idual and pooled biopsy a eas, excep o one u ologis , who had ma ginally highe su ace a eas on pooled biopsies (p=0.03). Al hough pooled biopsies pe o med unexpec edly well, possibly due o compensa o y slices acco ding o ou labo a o y ins uc ions (2-3 slices om indi idual biopsies, ou om pooled biopsies), he esul s a e conco dan wi h ou p e ious wo k in which we did no ind signi ican di e ences in he biopsy co e leng hs be ween he wo submission ypes (Tolonen e al., 2015). In ou labo a o y, he biopsies a e s aigh ened and p ocessed be ween sponges ha ha e been p e-mois u ed wi h o malin. The con en s o each biopsy con aine a e p ocessed and embedded oge he , indi idual biopsies leading o 12 pa a in blocks, and pooled biopsies leading o wo blocks pe case. I is especially impo an o embed biopsies ca e ully o he bo om o he me al mold, and o no ole a e any o e lapping o he co es. Slicing should a ge o he cen al axis o he biopsy (o biopsies), which can a ec he slice su ace a eas signi ican ly. In addi ion, some ma e ial should be 402 Digi al image analysis o he issue su ace a eas o p os a e biopsies Table 1. ImageJ mac o o analyzing su ace a ea o a sample. //Su ace a ea o p os a e samples // un("Th eshold..."); min=newA ay(3); max=newA ay(3); il e =newA ay(3); a=ge Ti le(); un("HSB S ack"); un("Con e S ack o Images"); selec Window("Hue"); ename("0"); selec Window("Sa u a ion"); ename("1"); selec Window("B igh ness"); ename("2"); min[0]=0; max[0]=255; il e [0]="pass"; min[1]=15; max[1]=255; il e [1]="pass"; min[2]=0; max[2]=238; il e [2]="pass"; o (i=0;i<3;i++){ selec Window(""+i); se Th eshold(min[i], max[i]); un("Con e o Mask"); i ( il e [i]=="s op") un("In e "); } imageCalcula o ("AND c ea e", "0","1"); imageCalcula o ("AND c ea e", "Resul o 0","2"); o (i=0;i<3;i++){ selec Window(""+i); close(); } selec Window("Resul o 0"); close(); selec Window("Resul o Resul o 0"); ename(a); // Colou Th esholding------------- makeLine(0, 0, 0, 0); se Op ion("BlackBackg ound", alse); un("Remo e Ou lie s...", " adius=2 h eshold=50 which=Da k"); un("Fill Holes"); spa ed o possible immunohis ochemical s ainings. All his makes i qui e a di icul ask, and needs an expe ienced echnician wi h good isuospa ial skills. The e a e mul iple easons in a o o si e- designa ed biopsies. The co es submi ed in sepa a e ials a e less p one o agmen a ion and issue en anglemen han pooled co es, which enables epo ing he numbe o posi i e co es o be mo e accu a e (Faja do and Eps ein, 2010). In addi ion, indi idual biopsies a e easie o embed in o a single plane o maximal issue ep esen a ion (Gup a e al., 2004), which can in luence he de ec ion a e o cance and small a ypical lesions (Iczkowski e al., 2002; Öbek e al., 2012). Mos impo an ly, indi idually submi ed biopsies spa e biopsy loca ion in o ma ion, which is pi o al o he planning o he obo ic su ge y and ac as a guide o e-biopsy si es in ac i e su eillance (Kao e al., 2002; Van de Kwas e al., 2003, 2013; Boccon- Gibod e al., 2004). On he o he hand, some au ho i ies ha e poin ed ou ha a widesp ead use o indi idual co e submission would inc ease he wo kload o al eady s e ched pa hology labo a o ies. Fo ins ance, Bos wick and Kahane ha e ecommended submi ing h ee biopsy co es pe casse e o economic easons (Bos wick and Kahane, 2013). Al hough he exac locus in o ma ion will be los using sugges ed h ee-co es- h ee-slices sys em, he au ho s did no ind e idence o lowe ed diagnos ic a e o a ypical small acina p oli e a ion, high g ade p os a ic in aepi helial neoplasia o adenoca cinoma (Bos wick and Kahane, 2013). Acco dingly, he esul s o he p esen s udy sugges ha highe his ological yield alone seems o be a weak a gumen o a o ing indi idual co es. The e o e, i seems easonable ha pooled 6+6 biopsies migh be u ilized o educe he pa hology labo a o y wo kload in selec ed cases in eg. pa ien s ou o adical ea men due o high age o PSA, o wi h ad anced disease. Fimlab Labo a o ies ecei es bo h indi idual and pooled p os a e biopsies om app oxima ely 1000 pa ien s annually. Recei ing all biopsies sepa a ely would yield 12 000 pa a in blocks compa ed o 2000 blocks using bila e al 6+6 biopsies. Al hough he mul i-embedding o he la e may be mo e di icul and ime consuming, i can aid educing he wo kload la e in he p ocess. We es ima e ha cu ing 10 000 ex a blocks would ake abou 100 labo days (o 5 mon hs) om an expe ienced echnician. Al hough ou aim was no o compa e ope a ing u ologis s, he e was some ope a o -dependen a ia ion in he esul s, as p oposed by Van de Kwas e al. (2013). The o al su ace a ea measu emen s span la ge anges, bu he e is no o e all end in he dispe sions o he o al su ace a eas be ween pooled and indi idually submi ed biopsies. The size o he ange o u ologis 1’s pooled biopsies (66.90 mm2) is much la ge han o indi idual biopsies (32.85 mm2). Con e sely, o 403 Digi al image analysis o he issue su ace a eas o p os a e biopsies Fig. 2. The unc ions pe o med by he ImageJ mac o on he image o a pooled p os a e biopsy sample. Howe e , we used he same image esolu ion h oughou he s udy, so he esul an e o is sys ema ic and should no a ec he compa abili y o he esul s. Second, he “Fill holes” unc ion wo ks o enclosed egions, whe eas open glands a e no aken in o accoun . Meanwhile, i a co e has s e ched, lea ing emp y space inside he a ea o a sample, i is illed and in luences he a ea measu emen . This may cause andom e o in he measu emen s. Conclusions Digi al image analysis o he issue su ace a ea o p os a e biopsies is he ul ima e way o measu e hei his ologic yield. Al hough a wide in a-ope a o a ia ion was seen in image analysis o he issue su ace a eas o bo h indi idual and pooled p os a e biopsies, he median issue su ace a eas we e equal ega dless o he submission ype. Ou esul s sugges ha he his ologic yields o ca e ully embedded bila e ally pooled p os a e biopsies can app oach he le el o indi idually embedded biopsies; a leas hey seem o ha e done so a ou ins i u e. To con i m hese esul s, a mul icen e 404 Digi al image analysis o he issue su ace a eas o p os a e biopsies Fig. 3. Boxplo s showing he dis ibu ions o he su ace a eas o he pooled and indi idually submi ed p os a e samples acco ding o he ope a ing u ologis . *signi icance a p=0.05. u ologis 4, he ange o alues is la ge o indi idual biopsies (62.40 mm2) han o pooled biopsies (46.13 mm2). Fo u ologis s 2 and 3, he sizes o he alue anges a e app oxima ely equal o bo h ypes o samples. The la ges o al su ace a ea alue is ound in he pooled biopsies g oup o all u ologis s, which may indica e ha he o al su ace a ea de e mina ion echnique is biased owa ds pooled biopsies. I seems likely ha measu ing he ac ual biopsy a ea in mm2 ins ead o jus measu ing hei leng h highligh s his a ia ion. As men ioned ea lie , si e-designa ed biopsies we e gene ally sliced on wo o h ee le els and pooled biopsies a ou le els, which may in oduce he a o emen ioned bias. Howe e , i seems o be a jus i ied p ac ice as he his ological yields we e simila while a he same ime he o al numbe o slides emain low (Fig. 1). The ImageJ mac o may ha e induced some e o in he su ace a ea measu emen s. Fi s , he alue o he measu ed a ea depends on he esolu ion (i.e., pixel size) because we modi y he image on a pixel le el. The e ec s o he “Remo e ou lie s” and “Fill holes” unc ions especially depend on he image esolu ion. s udy would be necessa y. Finally, he esul s should no be conside ed as a ecommenda ion o inc easingly submi unspeci ied bila e al co es bu o encou age pa hology labo a o ies o embed and slice all ecei ed p os a e biopsies wi h special a en ion, ega dless o submission ype. Acknowledgemen s: We would like o hank Tampe e Uni e si y Hospi al u ologis s M. Aho, J. Koskimäki, A. Ko sa and T. Mu ola (in alphabe ical o de ) o p o iding he samples used in his s udy and Sa akun a and Pi kanmaa Hospi al Dis ic s o unding he esea ch. We would also like o hank Ph.D. Pekka Ruusu uo i o his aluable commen s. Finally, we would like o hank he dedica ed labo a o y echnicians o Fimlab Labo a o ies. Au ho s’ con ibu ion: L Koi usalo: Da a collec ion, image analysis de elopmen , da a analysis, manusc ip w i ing; A Kaipia: P ojec de elopmen , manusc ip edi ing; P Kujala: P ojec de elopmen , manusc ip edi ing; J Isola: Image analysis de elopmen , manusc ip edi ing; TT Tolonen: P ojec de elopmen , manusc ip w i ing This a icle does no con ain any s udies wi h human pa icipan s o animals pe o med by any o he au ho s. Con lic s o in e es : The au ho s decla e ha hey ha e no con lic s o in e es . Re e ences Be accini A., Fandella A., P aye -Gale i T., Sca oni, V., Galosi, A. B., Fica a, V., T ombe a C., Gion M. and Ma o ana G. (2007). 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