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Genetic compatibility determines endophyte-grass combinations

Saikkonen, Kari,Wäli, Piippa R.,Helander, Marjo

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Gene ic Compa ibili y De e mines Endophy e-G ass Combina ions Ka i Saikkonen 1 *, Piippa R. Wa ¨li 2 , Ma jo Helande 3 1Plan P oduc ion Resea ch, MTT Ag i ood Resea ch Finland, Jokioinen, Finland, 2Depa men o Biology, Uni e si y o Oulu, Oulu, Finland, 3Depa men o Biology, Uni e si y o Tu ku, Tu ku, Finland Abs ac E en highly mu ually bene icial mic obial-plan in e ac ions, such as myco hizal- and hizobial-plan exchanges, in ol e sel ishness, chea ing and powe -s uggles be ween he pa ne s, which depending on p e ailing selec i e p essu es, lead o a con inuum o in e ac ions om an agonis ic o mu ualis ic. Using manipula ed g ass-endophy e combina ions in a i e yea common ga den expe imen , we show ha g ass geno ypes and gene ic misma ches cons ain gene ic combina ions be ween he e ically ( ia hos seeds) ansmi ed endophy es and he ou -c ossing hos , he eby educing in ec ions in es ablished g ass popula ions. In ec ions we e los in bo h g ass ille s and seedlings in F 1 and F 2 gene a ions, espec i ely. Expe imen al plan s we e collec ed as seeds om wo di e en en i onmen s, i.e., meadows and nea by i e banks. Endophy e- ela ed bene i s o he hos included an inc eased numbe o in lo escences, bu only in meadow plan s and no un il he las g owing season o he expe imen . Ou esul s illus a e he impo ance o gene ic hos speci ici y and ans- gene a ional ma e nal e ec s on he gene ic s uc u e o a hos popula ion, which ac as des abilizing o ces in endophy e- g ass symbioses. We p opose ha (1) gene ic misma ches may ac as a bu e ing mechanism agains highly compe i i e endophy e-g ass geno ype combina ions h ea ening he biodi e si y o g assland communi ies and (2) hese misma ches should be acknowledged, pa icula ly in b eeding p og ammes aimed a ha nessing sys emic and he i able endophy es o imp o e he ag icul u ally aluable cha ac e is ics o cul i a s. Ci a ion: Saikkonen K, Wa ¨li PR, Helande M (2010) Gene ic Compa ibili y De e mines Endophy e-G ass Combina ions. PLoS ONE 5(6): e11395. doi:10.1371/ jou nal.pone.0011395 Edi o : Dennis Ma inus Hansen, S an o d Uni e si y, Uni ed S a es o Ame ica Recei ed Ma ch 31, 2010; Accep ed June 10, 2010; Published June 30, 2010 Copy igh : ß2010 Saikkonen e al. This is an open-access a icle dis ibu ed unde he e ms o he C ea i e Commons A ibu ion License, which pe mi s un es ic ed use, dis ibu ion, and ep oduc ion in any medium, p o ided he o iginal au ho and sou ce a e c edi ed. Funding: This s udy was unded by he Academy o Finland (P ojec no. 110658, www.aka. i). The unde s had no ole in s udy design, da a collec ion and analysis, decision o publish, o p epa a ion o he manusc ip . Compe ing In e es s: The au ho s ha e decla ed ha no compe ing in e es s exis . * E-mail: ka i.saikkonen@m . i In oduc ion Mu ualis ic in e ac ions be ween mic obes and plan s a e iewed as a ubiqui ous coope a ion con e ing ecip ocal bene i s o he pa ne s. Howe e , e en seemingly highly mu ualis ic in e ac ions (e.g. be ween plan s, myco hizal ungi and/o hizobia) a e inhe en ly uns able, because ecip ocal coope a ion is based on mu ual exploi a ion and hus cos s and bene i s a e a ely symme ic o he pa ne s [1–7]. Consequen ly, mic obial- plan in e ac ions, like any o he biological in e speci ic in e ac ion [1,2,8–12], in ol e sel ishness, chea ing and powe -s uggles be ween he pa ne s, hus o ming a con inuum o in e ac ions om an agonis ic o mu ualis ic [4], wi h an occasional b eakdown in mu ualism [12]. The symbiosis be ween endophy es and g asses is gene ally conside ed o be a classic example o mic obe-plan mu ualism d i ing g assland communi ies [13], as well as hose ood webs subsis ing upon hem [14,15]. The close link be ween endophy e i ness and i s hos g ass is p esumed o align he in e es s o bo h pa ne s owa ds a mu ually bene icial coope a ion [6,7,15,16], a iew which seems o be suppo ed by empi ical e idence. In his highly in eg a ed symbiosis, hyphae g ow in e cellula ly and asymp oma ically h oughou he abo e-g ound issues o he hos g ass. Th ough g owing in o he de eloping in lo escence and seeds, he ungus is e ically ansmi ed om ma e nal plan o o sp ing. E olu iona y e idence o s ic ly asexual Neo yphodium and sexual Epichloe¨ endophy es sugges s ha such e ical ansmission is concomi an wi h a educed abili y o con agious sp eading by asexual o sexual spo es and gene ic hos speci ici y [16]. Because he i ness and dis ibu ion o a ungus la gely depends on hos i ness [6], any mu ualis ic coope a ion p o iding a selec ion ad an age o he hos plan also bene i s he ungus. Con e sely, ecip ocal bene i s om he ungus o he hos plan , such as inc eased g ow h, esis ance o bio ic and abio ic s esses and enhanced compe i i e abili ies [15], u he suppo he idea o endophy e-g ass mu ualism [16]. Ne e heless, in mos endophy e-g ass in e ac ions pa ne bene i s and symbio ic dependence a e asymme ic [6]. Symbiosis is essen ial o an endophy e because du ing i s sys ema ic g ow h he ungus subsis s en i ely on and wi hin he hos g ass and e ical ansmission ia hos seeds is he p ima y mode o ungal dis ibu ion [16]. By con as , he symbio ic ela ionship emains only condi ional o he hos plan , as plan i ness does no necessa ily depend on he ungus [4,6,15]. In ac , in some en i onmen s symbiosis may e en be maladap i e [17,18]. Fo example, in endophy e species capable o sexual ep oduc ion, he p oduc ion o i s ui ing body is cos ly o he hos in e ms o p e en ed lowe ing [19]. Fu he mo e, in comple ely asexual endophy e s ains, he adap i e alue o symbiosis o he hos g ass appea s o a y among ungal s ains, being mo e p onounced in PLoS ONE | www.plosone.o g 1 June 2010 | Volume 5 | Issue 6 | e11395 nu ien - ich en i onmen s [15], as well as being dependen on plan -plan in e ac ions in g assland communi ies [13,20] and ophic in e ac ions in ood webs [16,21,22,23]. Acco dingly, he in ec ion incidence o g ass species and popula ions appea s o be highly a iable spa io empo ally [24–28], e lec ing how ungus and hos alike espond o changing selec ion p essu es, ei he indi idually o as a pheno ypic uni [6]. He e, we use endophy e manipula ion ials and a i e yea common ga den expe imen o es he impo ance o gene ic compa ibili y o endophy e-g ass symbiosis. Gene ic compa ibili y was examined in h ee ansgene a ional phases om he pa en al plan gene a ion o hose o he F 1 and F 2 gene a ions; i s a he ini ial encoun e o he ungus and he g ass, hen in he success o he e ical ansmission o he ungus o he ege a i e p opagules ( ille s) and o sp ing o he hos g ass. The easoning is ha he asymme ic dependence o he endophy e and he hos g ass may lead o (1) hos plan sanc ions agains less bene icial ungal s ains in p e ailing selec i e p essu es and (2) he loss o he e ically ansmi ed ungus, which is con inually con on ed wi h new gene ic combina ions in he ou -c ossing hos popula ion. This is because he endophy e geno ype emains unchanged in he plan lineage whils plan geno ypes a e blended h ough ecombina ion o e ime [6]. This could lead o a gene ic misma ch be ween he ungus and he hos , hus des abilizing he symbiosis and cons aining he di e si y o success ul geno ype-geno ype combi- na ions o he e ically ansmi ed endophy es and he hos g asses. Ma e ials and Me hods S udy sys em To cap u e he b ead h o a iabili y inhe en in g ass- endophy e symbioses, as a sui able model we selec ed wild popula ions o a na i e g ass species, i.e. ed escue (Fes uca ub a L.) [29], in suba c ic Finland. This species belongs o a la ge and ubiqui ous g oup o mo phologically simila ine lea ed Fes uca species. Because o hei high ole ance o a wide ange o bio ic and abio ic condi ions, escues ha e been enacious in ade s o e es ial habi a s, colonising e e y con inen on he Ea h in g ea e abundance and dis ibu ion han any o he g oup o highe plan s [30]. Fu he mo e, hey a e also o g ea ag onomic impo ance in ameni y u . Finnish ed escue popula ions a e in ec ed by he sys emic and e ically ansmi ed Epichloe¨ es ucae Leuch m., Scha dl & Siegel endophy e [27]. Al hough a subs an ial numbe o na i e popula ions a e endophy e- ee [24,27], he p opo ion o in ec ed plan s anges om 4 o 87% in in ec ed popula ions and is highes in suba c ic a eas [24,27]. Fu he mo e, in ec ion equencies appea o be habi a - ela ed, being highe in meadows compa ed o i e banks, wi hou gene ic di e en ia ion in endophy e popula ions among he habi a s [27]. This sugges s ha he selec ion ad an age o he symbiosis a ies be ween en i onmen s. A single ungal geno ype ( ep esen ing 63.5% o all isola es) domina es he suba c ic endophy e popula ions. The gene ic di e si y de ec ed appea s o be un ela ed o ei he he in ec ion equency o habi a [27], sugges ing ha he ungus is p edominan ly asexual a he edge o i s no he n dis ibu ion ange in he suba c ic. This supposi ion is s ongly suppo ed by he ac ha in ou 12 yea s o in ensi e ieldwo k in ol ing Fes uca ub a in no he nmos Finland, no endophy ic sexual ui ing bodies ha e e e been de ec ed. Success o e ical ansmission in na u e We collec ed ed escue (Fes uca ub a) seeds om 110 wild plan s (pa en al gene a ion) g owing in ei he meadow (six popula ions; 11, 10, 14, 11, 12 and 10 plan s pe popula ion) o i e bank ( ou popula ions; 10, 10, 10 and 12 plan s pe popula ion) habi a s in suba c ic i e alleys in no he nmos Finland in all 2000. The in ec ion s a us o he p ogenies was i s de e mined by he mic oscopic examina ion o s ained seeds collec ed in he ield [31], as well as s ained lea shea hs o he es ablished seedlings [32]. Endophy e manipula ions o es gene ic hos speci ici y Ou p ima y in en ion was o gene a e F 1 popula ions consis ing o con olled geno ype-geno ype combina ions o he ungus and he plan (including na u ally endophy e-in ec ed (E+) and endophy e- ee (E-) con ols) o explici ly examine o wha ex en he pheno ypic ai s o hos - ungal uni s a e explained by ungal associa e and gene ic combina ions be ween he ungus and he hos . The endophy e manipula ion ials, in ol ing endophy e emo al om E+seeds by hea ea men , as well as inocula ed E- seedlings, also allowed us o examine whe he pa ne speci ici y o Figu e 1. Success o manipula ion ials. Inocula ion success o ungal endophy e isola es in manipula ion ials wi h 42 na u ally endophy e- ee ma e nal amilies o Fes uca ub a (A) and 49 Epichloe ¨ es ucae endophy e isola es (B) isola ed om he same popula ions. Endophy e-in ec ed (E+) and endophy e- ee (E-) seedlings a e shown as black and whi e ba s. doi:10.1371/jou nal.pone.0011395.g001 Gene ic Misma ch & Endophy es PLoS ONE | www.plosone.o g 2 June 2010 | Volume 5 | Issue 6 | e11395 compa ibili y cons ain he di e si y o es ablished endophy e symbiosis. Seeds o 87 ma e nal plan s o he pa en al gene a ion, p oducing ei he s ic ly E+o E- p ogenies, we e assigned o he endophy e manipula ions. To manipula e in e ac ions be ween ungal endophy es and g asses, we i s elimina ed he ungus om some o he E+seeds by hea ea men s (ME-). Using a modi ica ion o he me hod by Williams e al. [33], in ec ed seeds we e placed in Eppendo ubes in a wa e incuba o a +54.2uC o 20 minu es. All seeds we e ge mina ed and hen some o he na u ally endophy e- ee (E-) seedlings we e in ec ed by inocula - ing hyphae in o he plan issue (ME+) immedia ely a e he eme gence o he i s seed lea [34]. The wo week old seedlings we e po ed in sand and g own in he g eenhouse. The ungal isola es used in he inocula ions we e isola ed om he same popula ion as each a ge seedling. The ge mina ion a e o un ea ed seeds was 51%. Al hough he hea ea men success ully emo ed he ungus in 99% o he seedlings, he ea men also deg eased he ge mina ion a e om 51% o 8%. In o al, 3397 seeds ou o 19831 ge mina ed and 2326 seedlings we e subjec ed o he inocula ion ea men . App oxima ely one hi d (38%) o he es ablished o iginally endophy e- ee seedlings we e success ully inocula ed (132 ou o 350 seedlings). Inocula ion dec eased he su i al o seedlings om 67% o 30%. Finally, gene ic hos speci ici y be ween he ungus and he hos plan was examined wi h 42 ma e nal amilies and 49 ungal isola es. The in ec ion Figu e 2. Loss o in ec ion in ege a i e g ass ille s. P opo ion (%) o Epichloe ¨ es ucae endophy e-in ec ed ille s o na u ally (E+) and manipula i ely (ME+) endophy e-in ec ed Fes uca ub a plan s in F 1 gene a ion. The means a e calcula ed o each mo he plan (n = 10). E o ba s show S.E. doi:10.1371/jou nal.pone.0011395.g002 Figu e 3. Loss o in ec ion in sexually p oduced seedlings. P opo ional (%) loss o endophy e in ec ion in Fes uca ub a seedlings (F 2 gene a ion). O he 47 endophy e-in ec ed (E+) mo he plan s (F 1 gene a ion), 14 p oduced o sp ing o exclusi ely endophy e-in ec ed seedlings ( o al = 20), 13 p oduced o sp ing o exclusi ely endophy e- ee seedlings ( o al = 19), while 20 mo he plan s p oduced p ogenies consis ing o bo h E+and E- seedlings (44 and 37, espec i ely) in he F 2 gene a ion. Simila ly, h ee and ou ou o 12 manipula i ely endophy e-in ec ed (ME+) mo he plan s p oduced o sp ing o exclusi ely endophy e-in ec ed ( o al = 3) o – ee ( o al = 4) seedlings, and i e o he mo he plan s p oduced p ogenies consis ing o bo h E+and E- seedlings (10 and 13, espec i ely) in he F 2 gene a ion. In o al, E+mo he plan s p oduced 63 and 57, and ME+mo he plan s, 21 and 16 es ablished E+and E- seedlings, espec i ely. doi:10.1371/jou nal.pone.0011395.g003 Gene ic Misma ch & Endophy es PLoS ONE | www.plosone.o g 3 June 2010 | Volume 5 | Issue 6 | e11395 s a us o he plan s was e i ied in all di e en phases o he s udy by g owing he ungi ou om su ace s e ilized lea es, and by using a issue p in immunoblo (TPIB) assay [35]. Common ga den expe imen s These expe imen s we e designed o examine (1) he success o e ical ansmission, and (2) he ela i e impo ance o endophy e in ec ion and ma e nal e ec s on hos g ass pe o mance, which can be seen as po en ially adap i e esponses o he ma e nal en i onmen s [36]. He e, na u ally and a i icially in ec ed and endophy e- ee seedlings, i.e. E+,ME+, E- and ME-, espec i ely we e ansplan ed om he g eenhouse o a common ga den a Ruissalo Bo anical Ga den, Tu ku, in 2003. In o al, 679 seedlings comp ising 134 and 72 E+, 39 and 35 ME+, 184 and 139 E- and 35 and 41 ME- o 75 ma e nal plan s o igina ing om meadows (48 plan s) o i e banks (27 plan s), espec i ely, we e andomly assigned wi hin 19 blocks and plan ed in sand. Success o e ical ansmission. To de e mine he success o e ical ansmission in ege a i e ille s (F 1 gene a ion), ou ille s we e gen ly de ached om 10 E+plan s (ma e nal en i onmen : 6 and 4 om meadows and i e banks, espec i ely) and om 10 ME+plan s (ma e nal en i onmen : 4 and 6 om meadows and i e banks, espec i ely) g owing in he common ga den in 2007. The ille s we e hen ansplan ed sepa a ely in o 7.567.5 cm po s con aining sand and g own in he g eenhouse o wo mon hs, a e which hei in ec ion s a us was de e mined om all o a leas 10 o he ille s, depending on hei size. To de e mine any ansgene a ional educ ion in in ec ion in he sexually p oduced F 2 gene a ion, we collec ed all seeds o expe imen al plan s in Augus 2004, ge mina ed and plan ed hem, and de e mined he in ec ion s a us o he es ablished seedlings. Impo ance o endophy e symbiosis and ma e nal e ec s. To examine ela i e impo ance o endophy e symbiosis and ma e nal e ec s, plan pe o mance was examined as biomass in 2004, including he numbe o in lo escences p oduced each yea (2004–2008). S a is ical analyses. We used Chi-squa e analyses (x 2 – es ) o es he e ec s o endophy e manipula ion (na u al o in oduced) on loss o in ec ion du ing ege a i e g ow h and seed p oduc ion, as well as any di e ences in endophy e inocula ion success among o iginally E- seed amilies and endophy e isola es. In o al, 23 o iginally E- seed amilies and 33 endophy e isola es p oducing a leas i e es ablished seedlings we e included in o he s a is ical analyses o mee he equi emen s o he x 2 - es [37]. The e ec s o he o iginal habi a (meadow o i e bank) and endophy e s a us on one yea biomass p oduc ion in he common ga den was analysed wi h he GENMOD p ocedu e, using gamma dis ibu ion and powe (21) as a link unc ion. We examined in lo escence p oduc ion in common ga den g asses in 2004–2008 using wo me hods: i s ly, wi h a epea ed measu es model and hen sepa a ely o each yea wi h GENMOD (nega i e binomial dis ibu ion and log-link unc ion). The a iables o iginal habi a , endophy e s a us and hei in e ac ion we e used as ixed ac o s in he s a is ical models. Analyses we e done wi h he SAS so wa e package e sion 9.1 (SAS Ins i u e, Ca y, NC, USA). Resul s Ve ical ansmission o he ungus is impe ec in na u e. O he 110 plan s collec ed in he ield, 58 hos ed he endophy ic ungus, o which 23 p oduced bo h endophy e-in ec ed and endophy e- ee seedlings in he F 1 p ogeny. This demons a es ha he ungal in ec ion was los in some seedlings o he o sp ing in 40% o he endophy e-in ec ed ma e nal amilies in na u e. Endophy e manipula ion ials sugges ha he gene ic compa - ibili y be ween he ungus and he hos d i es he symbiosis. One i h o he F 1 p ogenies did no accep he endophy e a all, inocula ion success a ying om 0 o 88% among he hos plan p ogenies (x 2 = 42.25, d = 22, p = 0.008) (Fig. 1 a). Simila ly, inocula ion a emp s we e unsuccess ul wi h nine ungal isola es, and inocula ion success among he 49 ungal isola es a ied om 0–100% (Fig. 1 b). Howe e , he di e ence in in ec i i y among endophy e isola es emained s a is ically insigni ican (x 2 = 35.40, d = 32, p = 0.311) when only he cases o a leas i e es ablished seedlings we e included in he analyses o mee he equi emen s o he x 2 - es [37]. Ne e heless, he inocula ion success a ied om 0–60% in hese 33 cases (Fig. 1 b). These esul s sugges ha a ealized asso men o he endophy e-g ass symbioses is p ima ily de e mined by he hos g ass geno ype and can be pa ly con ined o well-ma ched geno ype-geno ype combina ions o he endo- phy es and he hos g asses. In he common ga den and g eenhouse expe imen s, he loss o in ec ion was p onounced and appea s o be pa ly a ibu able o he gene ic misma ch be ween he ungus and he hos . Fi s ly, he in ec ion was los in 33% o ege a i e g ass ille s (Fig. 2) and 46% o sexually p oduced seedlings (Fig. 3), which demons a es ha he loss o in ec ion can be subs an ially mo e equen han has been commonly assumed in p e ious li e a u e [4,6,16,24,27] and highe in seeds p oduced by ou c ossing compa ed o clonally p oduced plan s. Secondly, consis en wi h he hypo hesis o gene ic misma ch, ungal g ow h in ege a i e ille s was 27% lowe in ME+ma e nal amilies compa ed o E+ amilies (Fig. 2; x 2 = 12.27, d =1, P,0.0005). Meanwhile sexually p oduced Figu e 4. In lo escence p oduc ion o plan s. The numbe o in lo escences o in ec ed (E+), manipula i ely in ec ed (ME+), endo- phy e- ee (E-) and manipula i ely endophy e- ee (ME-) Fes uca ub a plan s (F 1 gene a ion) o igina ing om meadow and i e bank habi a s (pa en al gene a ion) g owing in a common ga den be ween 2004– 2008 (yea ly means 6S.E.). doi:10.1371/jou nal.pone.0011395.g004 Gene ic Misma ch & Endophy es PLoS ONE | www.plosone.o g 4 June 2010 | Volume 5 | Issue 6 | e11395 o sp ing o E+and ME+plan s comp ised o only E-, a mix u e o bo h E+and E- and only E+p ogenies in simila p opo ions (Fig. 3; x 2 = 0.1835, d =2, P,0.9123). The g ea e in ec ion ins abili y in ege a i e ille s in ME+plan s can be expec ed because he no el ungal-g ass geno ype combina ions we e no es ed and selec ed o by na u al selec ion. Ins ead, acco ding o he hypo hesis, ansgene a ional ins abili y should be equal in ME+and E+plan s in common ga den whe e c oss-pollina ion eely occu s be ween he expe imen al plan s and nea by wild g asses, he eby inc easing gene ic misma ch be ween he ungus and he hos . This c ea es an un i endophy e-g ass geno ype combina ion and des abilizes he symbiosis. In 2004, he biomass o common ga den g asses was a ec ed by habi a (x 2 =12.23,d =1,P,0.0005), bu no by endophy e in ec ion (x 2 = 1.61, d =3, P,0.6571) o hei in e ac ion (x 2 =0.74, d =3, P,0.8646). Meadow g asses showed a sligh ly highe biomass (mean6SE: 0.46560.012 g) han i e bank g asses (mean6SE: 0.40260.013 g). The emo al o he abo e-g ound biomass o plan s dec eased numbe o in lo escences in he ollowing yea 2005 (Fig. 4). The e was a h ee-way in e ac ion be ween yea , habi a (meadow o i e bank) and endophy e s a us in in lo escence p oduc ion o common ga den ed escues (Table 1). In each s udy yea , meadow g asses p oduced mo e in lo escences han hose om he i e bank (Table 2, Fig. 4). Endophy e-in ec ed g asses om bo h habi a s p oduced mo e in lo escences in 2005 compa ed o unin ec ed plan s. In 2008, endophy e-in ec ed g asses om meadows again p oduced mo e in lo escences han unin ec ed g asses. By compa ison, endophy e- emo ed (ME-) g asses p o- duced a ewe in lo escences compa ed o o he s (Table 2, Fig. 4). Discussion Ou esul s demons a e ha gene ic misma ches, ma e nal e ec s and loss o in ec ions occu commonly in endophy e-g ass in e ac ions and may pa ly explain hose di e ences de ec ed in in ec ion equencies and gene ic s uc u es among na u al g ass popula ions [6,36]. Fo example, seeds p oduced by ou c ossing should ha e a high equency o misma ches be ween he ungus and he g ass and hus pionee g ass popula ions ha ing a la ge po ion o newly es ablished indi iduals should ha e lowe in ec ion equencies han olde popula ions. The highe equen- cies o endophy e-in ec ed g asses de ec ed in meadows compa ed o sandy i e banks suppo his iew [27]. Meadows a e mo e s able and e ile en i onmen s, whose g ass popula ions a e olde and well es ablished by clonal sp ead. By con as , i e bank popula ions su e almos annual dis u bance due o sp ing looding [27,38]. Fu he mo e, ou esul s indica e ha he ma e nal en i onmen may s ongly a ec in lo escence p oduc- ion o he g asses wi h a ime lag and he eby he dispe sal and compe i i e abili y o endophy e-in ec ed plan s. As p edic ed by he geog aphic mosaic heo y o co-e olu ion [11], endophy e– plan in e ac ions appea o p ojec o he ho - and cold-spo s o selec i e p essu es in an ecosys em. Acco dingly, endophy es may p o ide selec i e ad an ages o he hos in some en i onmen s [27,39], which a e occupied by he locally mos i ungus–plan geno ype combina ions wi hin a popula ion. Consequen ly, in na u e he es ablished endophy e-hos combina ions clea ly ep esen only a ac ion o he a ailable gene ic a ia ion in he popula ions. The agili y o endophy e in ec ions de ec ed in his wo k ques ions he s ic mu ualis ic na u e o endophy e-g ass symbiosis and sugges s ha he high equencies o endophy e-in ec ed plan s in suba c ic ed escue popula ions may only pe sis i he selec i e ad an age o endophy e in ec ion o he hos plan is high. Because he endophy e may inc ease i s dis ibu ion and i ness p ima ily by inc easing he plan ’s alloca ion o emale unc ions, we coun ed he numbe o in lo escences in he common ga den expe imen o e a i e yea pe iod. On a e age 44% o plan s p oduced in lo escences each yea . Endophy e in ec ion inc eased in lo escence p oduc ion o g asses in some yea s ega dless o he manipula ion s a us o he in ec ion. This di e ence in in lo escence p oduc ion be ween endophy e-in ec ed and endophy e- ee g asses was mo e p o- nounced and equen in meadow g asses (Fig. 4). This may pa ially explain he highe in ec ion equencies de ec ed in meadows compa ed o i e banks [27]. In e es ingly, he p oduc ion o in lo escences in ME- plan s declined owa ds he end o he expe imen , sugges ing ha he loss o he endophy e a e a long co- e olu iona y ela ionship may be disad an ageous o hos plan i ness when long- e m ep oduc i e success is aken in o accoun . These esul s emphasize he impo ance o bo h long- e m expe imen s and demog aphic eco ds om na u al popula ions in ecological and e olu iona y s udies. Ou indings ha e heo e ical and me hodological implica ions, wi h po en ial economic alue in ag onomy as well. Fi s ly, hese Table 1. Repea ed measu es analysis o in lo escence p oduc ion o Fes uca ub a g asses in a common ga den. Explana o y a iable d x 2 p Habi a (H) 1 26.00 ,.0001 Endophy e s a us (E) 3 12.22 0.0067 H*E 3 0.98 0.8052 Time (T) 4 71.06 ,.0001 E*T 12 22.25 0.0348 H*T 4 11.93 0.0179 H*E*T 12 25.22 0.0138 doi:10.1371/jou nal.pone.0011395. 001 Table 2. E ec s o o iginal habi a and endophy e s a us on in lo escence p oduc ion o Fes uca ub a g asses g own in a common ga den in di e en yea s. 2004 2005 2006 2007 2008 Exp. Va . d x 2 px 2 px 2 px 2 px 2 p Habi a (H) 1 24.1 ,0.001 3.3 0.068 10.6 0.001 21.2 ,0.001 21.4 ,0.001 Endo (E) 3 1.7 0.641 15.4 0.002 5.5 0.138 2.9 0.416 10.8 0.013 H*E 3 2.9 0.401 5.3 0.153 0.7 0.880 1.3 0.719 12.5 0.006 Abb e ia ions: Exp.Va . = explana o y a iable, Endo = Endophy e s a us. doi:10.1371/jou nal.pone.0011395. 002 Gene ic Misma ch & Endophy es PLoS ONE | www.plosone.o g 5 June 2010 | Volume 5 | Issue 6 | e11395 esul s illus a e he impo ance o gene ic incompa ibili y in ou - c ossing g ass popula ions and ma e nal e ec s as des abilizing o ces in endophy e-g ass symbioses. These o ces may ac as bu e ing mechanisms agains compe i i e endophy e-g ass geno- ype combina ions, po en ially domina ing he popula ions and g assland communi ies. 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Oecologia 159: 49–57. Gene ic Misma ch & Endophy es PLoS ONE | www.plosone.o g 6 June 2010 | Volume 5 | Issue 6 | e11395